Skip to content

Instantly share code, notes, and snippets.

{
"name": "HAMDJADXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/141021_SN911_0235_BHAMDJADXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n\"",
"sample sheet": [
"HAMDJADXX,1,SV6,,CGATGT,,N,,,lane1",
"HAMDJADXX,1,SV8,,ACAGTG,,N,,,lane1",
"HAMDJADXX,1,SV9,,GCCAAT,,N,,,lane1",
{
"name": "C4YA8ACXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/141017_SN911_0234_AC4YA8ACXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n\"",
"sample sheet": [
"C4YA8ACXX,6,MK170,,ATCACG,,N,,,lane6",
"C4YA8ACXX,6,MK171,,CGATGT,,N,,,lane6",
"C4YA8ACXX,6,MK172,,TTAGGC,,N,,,lane6",
{
"name": "C56P1ACXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/141106_SN911_0237_BC56P1ACXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n\"",
"sample sheet": [
"C56P1ACXX,7,MK207,,TGACCA,,N,,,lane7",
"C56P1ACXX,7,MK208,,GGCTAC,,N,,,lane7",
"C56P1ACXX,7,MK209,,CTTGTA,,N,,,lane7",
{
"name": "HAURNADXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/141203_SN911_0239_AHAURNADXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n\"",
"sample sheet": [
"HAURNADXX,2,QG1420-1,,undetermined,,N,,,lane2",
"HAURNADXX,2,QG896-1,,undetermined,,N,,,lane2",
"HAURNADXX,2,CB4856-ASE-1,,undetermined,,N,,,lane2",
{
"name": "HBGGUADXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/141205_SN911_0240_AHBGGUADXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*\"",
"sample sheet": [
"HBGGUADXX,1,LMN,,Undetermined,,N,,,lane1",
"HBGGUADXX,2,LMN,,Undetermined,,N,,,lane2"
]
{
"name": "HAMMWADXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/141218_SN911_0241_AHAMMWADXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n,Y*\"",
"sample sheet": [
"HAMMWADXX,1,wt,,ATCACG,,N,,,lane1",
"HAMMWADXX,1,rad27d,,CGATGT,,N,,,lane1",
"HAMMWADXX,1,cdc9deg_rad27d,,TGACCA,,N,,,lane1",
{
"name": "C5HHJACXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/150116_SN911_0244_BC5HHJACXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n\"",
"sample sheet": [
"C5HHJACXX,2,bgm1,,CGATGT,,N,,,lane_2",
"C5HHJACXX,2,bgm2,,TGACCA,,N,,,lane_2",
"C5HHJACXX,2,bgm3,,ACAGTG,,N,,,lane_2",
{
"name": "HF7C2ADXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/150112_SN911_0243_AHF7C2ADXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n,Y*\"",
"sample sheet": [
"HF7C2ADXX,1,AH6851-6h,,ATGTCA,,N,,,lane_1",
"HF7C2ADXX,1,AH8049-6h,,ACAGTG,,N,,,lane_1",
"HF7C2ADXX,1,AH8057-6h,,GTCCGC,,N,,,lane_1",
{
"name": "C5HLUACXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/150129_SN911_0245_AC5HLUACXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6n\"",
"sample sheet": [
"C5HLUACXX,1,foxflaz12hpf1,,AAGGGA,,N,,,lane_1",
"C5HLUACXX,1,foxfnk412hpf1,,CCTTCA,,N,,,lane_1",
"C5HLUACXX,1,foxfcamras12hpf1,,GGACCC,,N,,,lane_1",
{
"name": "H2K7VBCXX",
"email": "[email protected]",
"flowcell path": "/export/data1/gencore/hiseq/150209_SN911_0246_BH2K7VBCXX",
"output path": "/export/data1/gencore/demux",
"configure bcl2fastq": "--use-bases-mask \"Y*,I6nn,Y*\"",
"sample sheet": [
"H2K7VBCXX,1,MRP17,,AGTCAA,,N,,,lane_1",
"H2K7VBCXX,1,MRP19,,ATCACG,,N,,,lane_1",
"H2K7VBCXX,1,MRP20,,CGATGT,,N,,,lane_1",