Ad Astra per Aspera

Vigneswaran Chandrasekaran vigneswaran-chandrasekaran

Ad Astra per Aspera

I like Computational Neuroscience

vigneswaran-chandrasekaran / dict_neurongroup.py

Last active June 2, 2020 17:19

Collector function to get `NeuronGroup` and return dictionary form of all its entities

	from brian2 import *
	from brian2.utils.stringtools import get_identifiers

	def collect_NeuronGroup(group):

	"""
	Collector function to extract necessary information from NeuronGroup
	and represent them in dictionary format
	"""

vigneswaran-chandrasekaran / getting_started_matnwb.m

Created July 5, 2021 14:01

Getting started with MatNWB and reproducing Extracellular Electrophisiology Tutorial

	% Reproducing code/results of MatNWB Extracellular Electrophisiology
	% Tutorial [https://www.youtube.com/watch?v=W8t4_quIl1k]

	% Create NWB object and add general information
	nwb = NwbFile(...
	'session_description', 'this is my first mouse experiment',...
	'identifier', 'MouseDay1',...
	'session_start_time', datetime(2021, 07, 05, 1, 24, 33),...
	'general_experimenter', 'Vigneswaran',...
	'general_institution', 'IITM',...

vigneswaran-chandrasekaran / toNWB.m

Created July 12, 2021 14:46

	% Replicating PyNWB version of converting Steinmetz et. al dataset to
	% NWB format in MatNWB. Source: https://github.com/SteinmetzLab/dataToNWB

	% add subject information
	subject = types.core.Subject('age', '77', ...
	'genotype', 'tetO-G6s x CaMK-tTA', ...
	'sex', 'F', ...
	'species', 'Mus musculus', ...
	'description', 'strain: C57Bl6/J');