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LAYER = 'Cy3'
OUT = 'my_exported_image_' + LAYER

from matplotlib import pyplot as plt
import numpy as np

layer = viewer.layers[LAYER]
img = layer.data

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#!/usr/bin/env python
import os
import shutil

raw_ext = '.RAF'
jpg_ext = '.JPG'
destination = 'jpg_only'


for filename in os.listdir('.'):

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# Video encoding. Arguments to ffmpeg should be passed in quotes
# Example
#  ls *.avi | ff_avi2webm "-filter:v 'crop=in_w-100:in_h/2'"

ff_any2webm(){
  parallel ffmpeg -i {} $1 -c:v vp9 {.}.webm
}

ff_whatsapp(){
  # Convert specified videos to mp4 that are compatible with whatsapp

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ls -1 *.avi | parallel ffmpeg -i {} -c:v vp9 {.}.webm

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ffmpeg -i first.avi -i second.avi -filter_complex "[0:v][1:v]hstack=inputs=2[v]" -map "[v]" side-by-side.webm

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ffmpeg -i <input>.avi -c:v vp9 <output>.webm

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#!/bin/bash

# Adapted from https://stackoverflow.com/a/52543399/6029703

if [ "$#" -gt 2  -o  "$#" -lt 1 ]; then
    echo "********************************************************************"
    echo "*                        Knitter version 1.1                       *"
    echo "********************************************************************"
    echo -e "This script converts Rmd files into HTML (default) or PDFs. \n"
    echo -e "usage: knitter file.Rmd [output_format] \n"

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This Gist confirms the Linked Identity in my OpenPGP key, and links it to this GitHub account.

Token for proof:
[Verifying my OpenPGP key: openpgp4fpr:5eef68f406860ce415623fe9505a5266ffee464d]

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This Gist confirms the Linked Identity in my OpenPGP key, and links it to this GitHub account.

Token for proof:
[Verifying my OpenPGP key: openpgp4fpr:5eef68f406860ce415623fe9505a5266ffee464d]

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#!/usr/bin/env python
# Implementation of algorithm from http://stackoverflow.com/a/22640362/6029703
import numpy as np
import pylab

def thresholding_algo(y, lag, threshold, influence):
    signals = np.zeros(len(y))
    filteredY = np.array(y)
    avgFilter = [0]*len(y)
    stdFilter = [0]*len(y)