Yi Zhou y1zhou

🦙

Protein design

Antibody Design @ BioMap | Bioinformatics PhD @ UGA

y1zhou / read_n_lines.py

Created July 24, 2018 18:24

	from itertools import islice


	def next_n_lines(file_opened, N):
	return [x.strip() for x in islice(file_opened, N)]


	with open("samplefile", 'r') as f:
	x = ""
	while x != []:

y1zhou / bench.sh

Created October 26, 2018 14:48 — forked from TimothyYe/bench.sh

Bench test script

	#!/usr/bin/env bash
	#
	# Description: Auto test download & I/O speed script
	#
	# Copyright (C) 2015 - 2016 Teddysun <[email protected]>
	#
	# Thanks: LookBack <[email protected]>
	#
	# URL: https://teddysun.com/444.html
	#

y1zhou / user.js

Created December 5, 2019 17:58

Edge style smooth scrolling for FireFox

	pref("general.smoothScroll.mouseWheel.durationMinMS", 50);
	pref("general.smoothScroll.mouseWheel.durationMaxMS", 150);
	pref("general.smoothScroll.currentVelocityWeighting", 0);
	pref("general.smoothScroll.stopDecelerationWeighting", 0.82);
	pref("mousewheel.default.delta_multiplier_y", 200);
	pref("mousewheel.min_line_scroll_amount", 25);

y1zhou / index.algolia.json

Created June 26, 2020 18:04

Hugo template for generating json file for Algolia

	{{/* $index is an array of json objects that we'll submit to Algolia */}}
	{{ $index := slice }}

	{{ range site.RegularPages }}
	{{ $page := . }}
	{{/* Split long posts into 1000-word chunks for less noise in results */}}
	{{ $chunked := slice }}
	{{ $post_len := len .PlainWords }}
	{{ range $i := (seq 0 1000 $post_len) }}
	{{ $chunked = $chunked \| append (delimit (first 1000 (after $i $page.PlainWords) ) " " ) }}

y1zhou / yeast2human.py

Created November 9, 2020 21:17

Yeast gene symbols to human homologs

	import numpy as np
	import pandas as pd
	import requests

	# Interested genes
	df = pd.read_excel("yeast_genes.xlsx")
	pom_genes = df["Schizosaccharomyces pombe"][
	df["Schizosaccharomyces pombe"].notnull()
	].tolist()
	cer_genes = df["Saccharomyces cerevisiae"][

y1zhou / markdown.snippets

Last active April 30, 2021 03:05

RStudio Rmarkdown snippets

y1zhou / build_docker.sh

Created June 30, 2022 15:17

EasyConnect Docker build script for M1 Macs

	git clone -b thread_reuse https://github.com/hagb/docker-easyconnect.git
	cd docker-easyconnect
	git submodule update --init --recursive
	docker image build -f Dockerfile.compile -t compile .

	EC_VER=7.6.7 # 替换成需要的版本
	DOCKER_USERNAME="your-name"
	docker image build \
	--build-arg EC_URL=$(cat ec_urls/${EC_VER}.txt) \
	-t "${DOCKER_USERNAME}/docker-easyconnect:${EC_VER}-aarch64" \

y1zhou / .pre-commit-config.yaml

Created January 29, 2023 10:07

Python pre-commit config

	default_language_version:
	python: python3

	repos:
	- repo: https://github.com/pre-commit/pre-commit-hooks
	rev: v4.4.0
	hooks:
	# list of supported hooks: https://pre-commit.com/hooks.html
	- id: trailing-whitespace
	- id: end-of-file-fixer

y1zhou / generate_slideshow.sh

Created February 2, 2023 08:50

Generate an mp4 slideshow from png images