yagays

# Convert tex formula into google chart API format (Jekyll/Octopress plugin)
#
# Usage: {% gctex tex_formula %}
#
# Author: yag_ays (yanagi.ayase [at] gmail.com)
# blog: http://yagays.github.com/
#
# Ref: http://d.hatena.ne.jp/repose/20110506/1304612242

require "cgi"

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#/usr/bin/env ruby

require "optparse"

def v(s)
  if s == "NaN"
    return s
  elsif s.include?("%")
    return s.gsub("%","").to_f
  else

yagays

#/usr/bin/env ruby

# usage:
# ruby rand_fastq.rb hoge.fasta > random.fastq

require 'bio'

genome = ""
read_length = 100
read_count = 10000000

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(map #(if (zero? (rem % 3))  
        (if (zero? (rem % 5))
          "fizzbuzz"
          "fizz")
        (if (zero? (rem % 5))
          "buzz"
          %))
     (range 1 101))

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;;; 文字列の指定
(def sentence "mississippi")
(def sentence "Ask not what your country can do for you but what you can do for your country")

;;; 接尾辞リストを作る
(defn tail [x]
  (loop [s x result []]
    (if (empty? s) (conj result s) (recur (apply str (rest s)) (conj result s) ))))

;;; ソートする

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;; 訓練データ
(def text_classified_p '(["good" "bad" "good" "good"]
                            ["exciting" "exciting"]
                            ["good" "good" "exciting" "boring"]))
(def text_classified_n '(["bad" "boring" "boring" "boring"]
                           ["bad" "good" "bad"]
                           ["bad" "bad" "boring" "exciting"]))

;;多変数ベルヌーイモデル 
(defn train [features]

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#compdef samtools 

################################################
# SAMtools commands and options are based on ver. 0.1.18
# http://samtools.sourceforge.net/samtools.shtml
#
# Edited by yag_ays 2011.10.25
################################################

_samtools() {

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#/usr/bin/env ruby


def open_indel_file(filename)
  h = []
  open(filename) { |f|
    f.each_line do |line|
      a = line.chomp.split("\t")
      h << a
    end

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#!/usr/bin/env ruby
# -*- coding: utf-8 -*-

require "pp"

def input_marshal_data(path)
  a = 0
  a_id_list = []
  open(path,"rb") {|f|
    a = Marshal.load(f)

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#/usr/bin/env ruby

def open_t_delimited_file(filename)
  h = {}
   File.open(filename).readlines.each do |line|
    a =  line.split("\t")
    h[a[0]] = a
  end
  puts filename.to_s + " was loaded."
  return h