zachcp

A treemap recursively subdivides area into rectangles; the area of any node in the tree corresponds to its value. This example uses color to encode different packages of the Flare visualization toolkit. Treemap design invented by Ben Shneiderman. Squarified algorithm by Bruls, Huizing and van Wijk. Data courtesy Jeff Heer.

States will adjust in size relative to the width of the container div, which allows SVG elements to be appropriately sized regardless of device size or screen resolution, making it a good way to integrate D3 and Bootstrap.

Click "Open in a new window", change the size of your browser window, and the states will scale with it. *Will not work in the standard bl.ocks.org view

Please let me know if there is a better/native way to do this!

Last Name	First Name	Institution	Latitude	Longitude	Webpage	Twitter	ORCID
Brady	Sean F.	The Rockefeller University	40.7626	-73.9555	http://lab.rockefeller.edu/brady/
Challis	Gregory	The University of Warwick	52.3821	-1.5624	http://www2.warwick.ac.uk/fac/sci/chemistry/research/challis
Clardy	John	Harvard University	42.3581	-71.0636	http://clardy.med.harvard.edu/
Fishbach	Michael	UCSF	37.7633	122.4585	http://www.fischbachgroup.org/michaelfischbach
Jensen	Paul	The Scripps Institute of Oceanography	32.866353	-117.25218	http://scrippsscholars.ucsd.edu/pjensen
Khosla	Chaitan	Stanford University	37.43	-122.17	http://www.stanford.edu/group/khosla/Home.html
Magarvey	Nathan	McMaster University	43.2633	-79.9189	http://iidr.mcmaster.ca/investigators/nathan-magarvey.html
Marahiel	Mohammed	Philipps-Universität Marburg	50.8108	8.7736	http://www.uni-marburg.de/fb15/ag-marahiel
O'Conner	Sarah	The John Innes Centre	52.6283	1.2967	http://www.jic.ac.uk/staff/sarah-oconnor/	SOC_at_JIC

	#!/usr/bin/env python
	"""Load a genbankfile into BioSQL

	You will need to adjust the database parameters and have a BioSQL database set
	up. See:

	http://biopython.org/wiki/BioSQL

	adapted from bchapmanns github script
	https://github.com/chapmanb/bcbb > gff > Scripts > gff > gff_to_biosql.py

	#!/usr/bin/env python
	"""Load multiple genbankfiles into BioSQL

	You will need to adjust the database parameters and have a BioSQL database set
	up. See: http://biopython.org/wiki/BioSQL

	adapted from bchapmanns github script
	https://github.com/chapmanb/bcbb > gff > Scripts > gff > gff_to_biosql.py

	and from single upload script:

	<!DOCTYPE html>
	<html>
	<head>
	<meta name="viewport" content="initial-scale=1.0, user-scalable=no"/>
	<script type="text/javascript" src="http://maps.google.com/maps/api/js?sensor=true"></script>
	<script src="http://d3js.org/d3.v3.min.js"></script>
	<script src="http://d3js.org/d3.geo.projection.v0.min.js"></script>
	<script src="http://d3js.org/topojson.v0.min.js"></script>
	<style type="text/css">

	<!DOCTYPE html>
	<html lang="en">
	<meta charset="utf-8">

	<head>
	<style>
	.states {
	fill: #ccc;
	stroke: #fff;
	}

	<!DOCTYPE>
	<html>
	<head>
	<script src="http://chmille4.github.com/Scribl/js/Scribl.1.0.min.js"></script>
	<script src="http://chmille4.github.com/Scribl/js/genbankData.js"></script>
	<link rel="stylesheet" id="themeCSS" href="http://chmille4.github.com/Scribl/css/iThing.css">
	<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.js"></script>
	<script src="http://ajax.googleapis.com/ajax/libs/jqueryui/1.9.2/jquery-ui.min.js"></script>
	<script src="http://static.tumblr.com/fcdode8/Giymeu17u/jquery.mousewheel.min.js"></script>
	<script src="http://static.tumblr.com/fcdode8/WVbmeu18t/jqallrangesliders-min.js"></script>

	This example expects to have d3.min.js and d3.layout.min.js in the same directory as pie.js and pie_serv.js.

	Run with node pie_serv.js

	import glob
	from Bio import SeqIO
	import pandas as pd

	files = glob.glob('./*fasta')

	def get_size_frequencies(fasta):
	with open(fasta, 'r') as f:
	lengths = [len(rec.seq) for rec in SeqIO.parse(f,'fasta')]
	lengths = pd.Series(lengths)