zhangce

CREATE OR REPLACE FUNCTION clear_count_1(sid int) RETURNS int AS 
$$
if '__count_1' in SD:
  SD['__count_1'] = -1
  return 1
return 0
$$ LANGUAGE plpythonu;


CREATE OR REPLACE FUNCTION updateid(startid bigint, sid int, sids int[], base_ids bigint[], base_ids_noagg bigint[]) RETURNS bigint AS 

zhangce

CREATE TABLE relation_extraction_evaluation AS
SELECT 
    t3.text                   AS entity_name, 
    t5.type                   AS entity_type, 
    t0.rel                    AS relation, 
    t4.text                   AS slot_value_name, 
    t7.type                   AS slot_value_type, 
    t3.fid                    AS entity_id, 
    t5.doc_id                 AS doc_id, 
    t6.sentence_index         AS sentence_index, 

zhangce

package org.deepdive.inference

import java.io.{File, PrintWriter}
import org.deepdive.calibration._
import org.deepdive.datastore.JdbcDataStore
import org.deepdive.Logging
import org.deepdive.settings._
import scalikejdbc._
import scala.util.matching._
import scala.io.Source

zhangce

deepdive_kbp_msushkov_large=# select t1.text, t2.text, t0.rel from kb t0, entities t1, entities t2 where t0.eid1=t1.fid and t0.eid2=t2.fid and t0.rel='per:spouse' limit 1;

zhangce

#! /usr/bin/env python
# File: udf/ext_has_spouse_features.py

import sys, json

# For each input tuple
# TODO: Sample Data and the input schema. 
# sample json
for row in sys.stdin:
  obj = json.loads(row)

zhangce

### PharmGKB - MENTION

    def extract(self, doc):

        #log(doc.docid)
        for sent in doc.sents:

            genes = []

zhangce

#ifndef _DW_H
#define _DW_H

#include "common.h"

#include "engine/dstruct.h"

#include "engine/scheduler.h"
#include "engine/scheduler_strawman.h"
#include "engine/scheduler_hogwild.h"

zhangce

#ifndef _DSTRUCT_H
#define _DSTRUCT_H

#include "common.h"


template<class A, SparsityType SPARSITY>
class Array{
};

zhangce

enum SparsityType{
  DW_SPARSE,
  DW_DENSE
};

enum ScheduleType{
  SCHED_STRAWMAN,
  SCHED_HOGWILD,
  SCHED_PERCORE,
  SCHED_PERNODE

zhangce

#include "common.h"

#include "engine/dstruct.h"
#include "engine/scheduler.h"
//#include "engine/scheduler_strawman.h"
//#include "engine/scheduler_hogwild.h"
//#include "engine/scheduler_percore.h"
//
#include "app/glm.h"