zhangce

#! /bin/bash

. "$(dirname $0)/env.sh"

cd $DEEPDIVE_HOME
### Run with deepdive binary:
#deepdive -c $APP_HOME/application.conf
### Compile and run:
./sbt/sbt "run -c $APP_HOME/application.conf"

zhangce

Mention(docid, mid) :- MentionFeature(docid, mid, f)

Mention(docid, mid1) :- Mention(docid, mid2), CRFConstraints(docid, mid1, mid2)

EL(docid, mid, e) :- ELFeature(docid, mid, e, f), Mention(docid, mid)

RelationMention(docid, mid1, mid2) :- RelationMention(docid, mid1, mid2, f), Mention(docid, mid1), Mention(docid, mid2)

Relation(docid, e1, e2) :- RelationMention(docid, mid1, mid2), EL(docid, mid1, e1), EL(docid, mid2, e2)

zhangce

Mention(docid, mid) :- MentionFeature(docid, mid, f)

Mention(docid, mid1) :- Mention(docid, mid2), CRFConstraints(docid, mid1, mid2)

EL(docid, mid, e) :- ELFeature(docid, mid, e, f), Mention(docid, mid)

RelationMention(docid, mid1, mid2) :- RelationMentionFeature(docid, mid1, mid2, f), Mention(docid, mid1), Mention(docid, mid2)

Relation(docid, e1, e2) :- RelationMention(docid, mid1, mid2), EL(docid, mid1, e1), EL(docid, mid2, e2)

zhangce

deepdive {

  db.default: {
    driver  : "org.postgresql.Driver"
    url     : "jdbc:postgresql://"${PGHOST}":"${PGPORT}"/"${DBNAME}
    user    : ${PGUSER}
    password: ${PGPASSWORD}
    dbname  : ${DBNAME}
    host    : ${PGHOST}
    port    : ${PGPORT}

zhangce

psql -p $PGPORT -h $PGHOST $DBNAME -c """

    CREATE TABLE F (
        id bigint,
        myid int,
        label int
    );

    CREATE TABLE A (

zhangce

drop aggregate array_stack_int(integer[]); 

drop aggregate array_stack_text(text[]);

CREATE ORDERED AGGREGATE array_stack_int(integer[]) (
SFUNC = array_cat,
STYPE = integer[]
);

zhangce

void TEST_CAFFENET_LAYERS(){
    
    const int BATCH = 256;
    
    Layer<DataType_SFFloat, Layout_CRDB> * layer1i = Layer<DataType_SFFloat, Layout_CRDB>::make_layer(65, 3, BATCH, 11, 96/2);
    Layer<DataType_SFFloat, Layout_CRDB> * layer1o = Layer<DataType_SFFloat, Layout_CRDB>::make_layer(55, 96/2, BATCH, 0, 0);

    
    Layer<DataType_SFFloat, Layout_CRDB> * layer2i = Layer<DataType_SFFloat, Layout_CRDB>::make_layer(55, 96/2, BATCH, 5, 256/2);
    Layer<DataType_SFFloat, Layout_CRDB> * layer2o = Layer<DataType_SFFloat, Layout_CRDB>::make_layer(51, 256/2, BATCH, 0, 0);

zhangce

clang++ -Wall -std=c++11 -g -O0 -DDEBUG -ferror-limit=10  -I./externals/OpenBLAS/ -L./externals/OpenBLAS/  -I./lib/lmdb/ -L./lib/lmdb/ -llmdb -lopenblas `pkg-config --cflags --libs protobuf` src/main.cpp src/parser/parser.cpp src/parser/cnn.pb.cc src/parser/corpus.cpp src/util.cpp -o deepnet
Package protobuf was not found in the pkg-config search path.
Perhaps you should add the directory containing `protobuf.pc'
to the PKG_CONFIG_PATH environment variable
No package 'protobuf' found
ld: warning: directory not found for option '-L./lib/lmdb/'
Undefined symbols for architecture x86_64:
  "google::protobuf::TextFormat::Parse(google::protobuf::io::ZeroCopyInputStream*, google::protobuf::Message*)", referenced from:
      Parser::ReadProtoFromTextFile(char const*, google::protobuf::Message*) in parser-d56e46.o
  "google::protobuf::MessageLite::ParseFromArray(void const*, int)", referenced from:

zhangce

clang++ -Wall -std=c++11 -g -O0 -DDEBUG -ferror-limit=10  -I./externals/OpenBLAS/ -L./externals/OpenBLAS/  -I./lib/lmdb/ -L./lib/lmdb/ -L/usr/local/lib/ src/main.cpp src/parser/parser.cpp src/parser/cnn.pb.cc src/parser/corpus.cpp src/util.cpp -o deepnet -llmdb -lopenblas -lprotoc -lprotobuf
ld: warning: directory not found for option '-L./lib/lmdb/'
Undefined symbols for architecture x86_64:
  "google::protobuf::MessageFactory::InternalRegisterGeneratedFile(char const*, void (*)(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&))", referenced from:
      cnn::protobuf_AddDesc_cnn_2eproto() in cnn-6210e9.o
  "google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned char*)", referenced from:
      cnn::Datum::SerializeWithCachedSizesToArray(unsigned char*) const in cnn-6210e9.o
      cnn::FillerParameter::SerializeWithCachedSizesToArray(unsigned char*) con

zhangce

#include "../src/Kernel.h"
#include "../src/LogicalCube.h"
#include "../src/Layer.h"
#include "../src/config.h"
#include "../src/Connector.h"
#include "../src/bridges/ParallelizedConvolutionBridge.h"
#include "test_types.h"
#include "gtest/gtest.h"
// #include "glog/logging.h"
#include <iostream>