Tokhir Dadaev zx8754
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zx8754
/ makeSNPnamesUnique.R
Created
June 10, 2021 21:19
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| # About ------------------------------------------------------------------- | |
| # 10/06/2021 | |
| # | |
| # Reference: https://www.biostars.org/p/9474813/ | |
| # | |
| # input: BIM filname | |
| # Note: This script will overwrite the existing input bim file | |
| # | |
| # example run: | |
| # Rscript makeSNPnamesUnique.R myBimFile.bim |
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| library(ggplot2) | |
| # Countries | |
| #https://worldpopulationreview.com/country-rankings/average-height-by-country | |
| d <- read.table("d.txt", header = TRUE, sep = "\t") | |
| d1 <- d[ d$cca3 %in% c("NLD", "GBR", "USA", "IND", "IDN"), | |
| c("country", "meanHeightMale")] | |
| # Tallest/Shortest person - Wikipedia | |
| # Chandra Bahadur Dangi: 54.6 cm (21.5 in) |
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| #https://stackoverflow.com/q/77868111/680068 | |
| library(kinship2) | |
| d <- read.table(text=" | |
| FAMID,ID,MO,FA,SEX,AGE,BIRTH | |
| F0001,C1,,,2,32, | |
| ,C2,,,1,34, | |
| ,C3,C1,C2,1,12, | |
| F0002,C4,,,2,44, |