ebi.jsonld

[{"@context":"http:\/\/schema.org","@type":"Event","name":"Metagenomics bioinformatics","start_date":"2021-11-8 00:00:00","endDate":"2021-11-12 00:00:00","description":"\u003Cp\u003ELearn about the tools, processes and analysis approaches used in the field of metagenomics.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data; including marker gene, whole gene shotgun (WGS) and assembly-based approaches.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe virtually-delivered content will involve participants learning via pre-recorded lectures followed by live Q\u0026amp;As with the trainers. Practical experience will be developed in group activities and in computational exercises run in Docker containers on our virtual training infrastructure.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/metagenomics-bioinformatics-virtual-2021","keywords":["DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_3174","edam:http:\/\/edamontology.org\/topic_3837","edam:http:\/\/edamontology.org\/operation_3182"],"audience":"\u003Cp\u003EThis course is aimed at life scientists who are working in the field of metagenomics and are currently in the early stages of data analysis. Participants should have some prior experience of using bioinformatics in their research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe practical sessions in the course require a basic understanding of the Unix command line and the R statistics package. If you are not already familiar with these then please ensure that you complete these free tutorials before you attend the course:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Structural bioinformatics","start_date":"2021-10-11 00:00:00","endDate":"2021-10-15 00:00:00","description":"\u003Cp\u003EStructural biology, determining the three-dimensional shapes of biomacromolecules and their complexes, can tell us a lot about how these molecules function and the roles they play within a cell. Data derived from structure determination experiments enables life-science researchers to address a wide variety of questions.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThis course explores bioinformatics data resources and tools for the investigation, analysis, and\u0026nbsp;interpretation\u0026nbsp;of biomacromolecular structures. It will focus on how best to analyse and interpret available structural data to gain useful information given specific research contexts. The course content will also cover predicting protein structure and function, and exploring interactions with other macromolecules as well as with low-MW compounds.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThis course will be a virtual event delivered via a mixture of live-streamed sessions, pre-recorded lectures, and tutorials with live support. We will be using\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;to run the live stream sessions (all fully password protected) with support provided by\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E. In order to make the most out of the course, you should make sure to have a stable internet connection throughout the week. There will also be networking and short social activities throughout the course.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nSelected participants will be sent materials prior to the course. These might include pre-recorded talks and required reading or online training that will be essential to fully understand the course.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/structural-bioinformatics2021","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003EThis course is aimed at wet-lab scientists generating structural data or scientists utilising structural data in their analysis and\/or interpretation. No previous\u0026nbsp;experience in the field of structural bioinformatics is required, however a basic knowledge of protein structure would be of benefit.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Mathematics of life: Modelling molecular mechanisms","start_date":"2021-09-27 00:00:00","endDate":"2021-10-1 00:00:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis course will provide participants with an introduction and hands-on training on\u0026nbsp; modelling approaches, tools and resources used in systems biology as well as touch on network analysis.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EComputer models are increasingly used to understand the essential processes of biology. Researchers in academic institutions as well as the pharmaceutical industry use mathematical models to generate hypotheses on how complex biomolecular systems work. Modelling of biochemical pathways deregulated in disease conditions can offer mechanistic insights into the pathology, help to elucidate mechanisms behind drug action, and predict the dose required for treatment thus facilitating fundamental research and drug discovery. \u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis course will provide a helpful introduction to tools and resources used in this scientific field.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course will be a virtual event delivered via a mixture of live-streamed sessions, pre-recorded lectures, and tutorials with live support. We will be using Zoom to run the live stream sessions (all fully password protected) with support provided by Slack. In order to make the most out of the course, you should make sure to have a stable internet connection throughout the week.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESelected participants will be sent materials prior to the course. These might include pre-recorded talks and required reading that will be essential to fully understand the course.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mathematics-life-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Jane Reynolds","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003EThis course is aimed at experimental biologists, bioinformaticians and mathematicians who have just started in systems biology, are familiar with the basic terminology in this field and who are now keen on gaining a better knowledge of systems biology modelling approaches to understand biological and biomedical problems.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EAn experience of using a programming language (e.g Python, R, Matlab) would be a benefit but is not mandatory.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAn undergraduate knowledge of molecular and cellular biology or some background in mathematics is highly beneficial.\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics for Immunologists","start_date":"2021-09-27 00:00:00","endDate":"2021-10-1 00:00:00","description":"\u003Cp\u003EThis joint course\u0026nbsp;with\u0026nbsp;Wellcome Genome Campus, Scientific Conferences and Advanced Courses,\u0026nbsp;aims to provide an introduction to immunology bioinformatics and offer opportunities to explore key methods, tools and resources that can be applied to research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe course will provide participants with an overview of best-practice methods in applying bioinformatics approaches and enable them to become confident users of their own and public domain data. The resources introduced during the course will cover a variety of data types, from genomic and proteomic data; to computational models, biological pathways and reaction information. Participants will gain experience of the analysis pipelines for NGS experiments relevant to immunology, and will be led through an exploration of this data to identify information of interest. Additionally participants will be introduced to how data from a number of sources can be integrated to provide a wider view of their research.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-immunologists2021","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":null,"eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":null,"sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Summer school in bioinformatics","start_date":"2021-06-28 00:00:00","endDate":"2021-07-2 00:00:00","description":"\u003Cp\u003EThis virtual course,\u0026nbsp;organised in association with Wellcome Genome Campus, Scientific Conferences and Advanced Courses, provides an introduction to the use of bioinformatics in biological research, giving participants guidance for using bioinformatics in their work whilst also providing hands-on training in tools and resources appropriate to their research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will initially be introduced to bioinformatics theory and practice, including best practices for undertaking bioinformatics analysis, data management and reproducibility. To enable specific exploration of resources in their particular field of interest, participants will be divided into focused groups to work on a small project set by EMBL-EBI resource and research staff, ending in a presentation from each group on the final day of the course to bring together learnings from all participants.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThe course includes training and mentoring by experts from EMBL-EBI and external institutes.\u003C\/p\u003E\r\n\r\n\u003Ch4\u003EVirtual course\u003C\/h4\u003E\r\n\r\n\u003Cp\u003EParticipants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;with additional support and communication via\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPre-recorded material will be made available to registered participants prior to the start of the course and in the week before the course there will be a brief induction session.\u0026nbsp;Computational practicals will run on EMBL-EBI\u0027s virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will need to be available between the hours of 09:30-17:30 BST each day of the course. Trainers will be available to assist, answer questions and further explain the analysis during these times.\u003C\/p\u003E\r\n\r\n\u003Ch3\u003EGroup projects\u003C\/h3\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EGenome variation across human populations\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003ENatural variation between individuals or between different human populations is a result of genome mutations throughout evolutionary history. Some mutations may become fixed because of their beneficial effect while most drift among individuals. During this project, you will investigate genomic variation between two separate human populations of European and Asian descent. Using sequence data from a number of individuals from each population, you will use a range of bioinformatics tools to discover variants that exist between them. In the second section of the project, you will attempt to analyse the functional consequences of the variants you have identified, linking them to phenotypes.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EModelling cell signalling pathways\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003ECurating models of biological processes is an effective training in computational systems biology, where the curators gain an integrative knowledge of biological systems, modelling and bioinformatics. You will learn to encode and simulate ordinary differential equation models of signalling pathways from a recent publication using user-friendly software such as \u003Ca href=\u0022http:\/\/copasi.org\/\u0022\u003ECOPASI\u003C\/a\u003E\u0026nbsp;even without extensive mathematical background. You will learn to perform in silco experiments, new predictions and develop hypotheses. Furthermore, you will learn how to annotate models and re-use pre-existing models from open repositories such as BioModels.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EInterpreting functional information from large scale protein structure data\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThis project will introduce you to the wealth of publicly available data in the Protein Data Bank (PDB) and give you the opportunity to investigate how large subsets of structure data can be used to analyse protein features and determine function. In the project you will learn how to: identify relevant protein structures, collate and interpret functional information, implement this process programmatically.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003ENetworks and pathways\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis project will cover typical bioinformatics analysis steps needed to put differentially expressed genes into a wider biological context. You will start with gene expression data (RNA-seq) to build an initial interaction network. Next, you will learn to combine public network datasets, identify key regulators of biological pathways and explore biological function through network analysis. You will get first-hand experience in integration and co-visualising with additional data and functional enrichment analysis. All this helps to put the initial results into a previously known context and provide hypotheses for potential follow up experiments. We will use Cytoscape, Expression Atlas, g:Profiler, StringDb, among other tools. We also may give a few R packages a try.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EMultiomics analysis of human disease\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this project, you will explore the benefits of multiomics data integration to investigate the onset and progression of human disease. You will analyse plasma proteomics and metabolomics data from patients and healthy controls to identify immunological and physiological changes that are associated with disease severity. You will exploit differential analysis, dimensionality reduction methods and multiomics integration tools to identify features that distinguish different patient groups, perform functional enrichment analysis, and visualise metabolomics and proteomics correlation networks in Cytoscape. Finally, you will build basic machine learning models to predict the course of disease and to propose therapeutic interventions that are likely to be most effective at different disease stages\u003C\/p\u003E\r\n\r\n\u003Ch3\u003EPosters\u003C\/h3\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EAll participants are expected to provide a poster for the course. We expect the posters to provide other delegates and trainers with information on your research and to act as a talking point. They should give an idea of the work you are engaged in, what you are planning to do next, any challenges you have experienced in your research and anything of interest that might be useful for other delegates. Further information about posters will be provided following application selections.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/summer-school-bioinformatics-2021","keywords":["Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Scientific conferences","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/operation_3927","edam:http:\/\/edamontology.org\/topic_0199","edam:http:\/\/edamontology.org\/topic_2259","edam:http:\/\/edamontology.org\/topic_3071","edam:http:\/\/edamontology.org\/topic_0092"],"audience":"\u003Cp\u003EThis course is aimed at individuals working across life sciences who have little or no experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their knowledge and skills further. No previous knowledge of programming is required for this course; group projects may give you the opportunity to learn basic programming, but participants will be supported in this by their mentors. Depending on your chosen project, an introductory programming tutorial may be given as homework prior to attending the course.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Systems biology: From large datasets to biological insight","start_date":"2021-06-21 00:00:00","endDate":"2021-06-25 00:00:00","description":"\u003Cp\u003EThis course, run with \u003Ca href=\u0022https:\/\/coursesandconferences.wellcomegenomecampus.org\/\u0022\u003EWellcome Genome Campus Advanced Courses\u003C\/a\u003E,\u0026nbsp;covers the use of multi-omics data and methodologies in systems biology. The content will explore a range of approaches -\u0026nbsp;ranging from network inference to machine learning -\u0026nbsp;that can be used to extract biological insights from varied data types. Together these techniques will provide participants with a useful toolkit for designing new strategies to extract relevant information and understanding from large-scale biological data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe motivation for running this course is a result of advances in computer science and high-performance computing that have led to groundbreaking developments in systems biology model inference. With the comparable increase of publicly-available, large-scale biological data, the challenge now lies in interpreting them in a biologically valuable manner. Likewise, machine learning approaches are making a significant impact in our analysis of large omics datasets and the extraction of useful biological knowledge.\u003C\/p\u003E\r\n\r\n\u003Ch4\u003EVirtual course\u003C\/h4\u003E\r\n\r\n\u003Cp\u003EParticipants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;with additional support and communication via\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPre-recorded material will be made available to registered participants prior to the start of the course and the week before the course there will be a brief induction session.\u0026nbsp;Computational practicals will run on EMBL-EBI\u0027s virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines; however, a small app will need to be installed to access the compute infrastructure.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will need to be available between the hours of 09:30-17:30 BST each day of the course. Trainers will be available to assist, answer questions, and further explain the analysis during these times.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/systems-biology-large-datasets-biological-insight","keywords":["Systems (Systems)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Advanced Courses","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_2259","edam:http:\/\/edamontology.org\/topic_3474","edam:http:\/\/edamontology.org\/topic_3366"],"audience":"\u003Cp\u003EThis course is aimed at advanced PhD students and post-doctoral researchers who are currently working with large-scale omics datasets with the aim of discerning biological function and processes. Ideal applicants should already have some experience (ideally 1-2 years) working with systems biology or related large-scale multi-omics data analyses.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EApplicants are expected to have a working knowledge of the Linux operating system and the ability to use the command line. Experience of using a programming language (i.e. Python) is highly desirable, and while the course will make use of simple coding or streamlined approaches such as Python notebooks, higher levels of competency will allow participants to focus on the scientific methodologies rather than the practical aspects of coding and how they can be applied in their own research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EWe recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\t\u003Cli\u003EPython turorial:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.w3schools.com\/python\/\u0022\u003Ehttps:\/\/www.w3schools.com\/python\/\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\t\u003Cli\u003ER tutorial:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.datacamp.com\/courses\/free-introduction-to-r\u0022\u003Ehttps:\/\/www.datacamp.com\/courses\/free-introduction-to-r\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003ERegardless of your current knowledge we encourage successful participants to use these, and other materials, to prepare for attending the course and future work in this area.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics for Principal Investigators","start_date":"2021-06-15 00:00:00","endDate":"2021-06-17 00:00:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis course has been designed to provide Principal Investigators (PI\u0027s) working in the life sciences with an introduction to the challenges of working with biological data as a research leader.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EStarting with a look at where bioinformatics and data science fits into their research teams, the course will enable PI\u2019s to take a strategic look at the requirements for undertaking such work and how bioinformatics capacity can be developed from personnel through to computational needs.\u0026nbsp; It will additionally provide guidance on strategies for managing data and the importance of data sharing; how to work with computational collaborators and what resources are available across the life sciences to support such work.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EDuring this course we will not be teaching hands-on bioinformatics analysis, but we will be signposting appropriate training resources to upskill you and your team.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-principal-investigators-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Jane Reynolds","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis course is aimed at both new and established investigators who lead a research team which currently uses bioinformatics, or where bioinformatics will be a component in future research. No prior knowledge of bioinformatics, or experience of analysis is required for this course. Applications are invited from investigators working in all settings, including academic, clinical and industrial organisations.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":null,"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"BioExcel Summer School on Biomolecular Simulations 2021","start_date":"2021-06-4 00:00:00","endDate":"2021-06-11 00:00:00","description":"\u003Cp\u003EThe summer\u0026nbsp;school will include lectures and hands-on sessions on the following topics:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EMolecular Dynamics simulations\u003C\/li\u003E\r\n\t\u003Cli\u003EBiomolecular Docking\u003C\/li\u003E\r\n\t\u003Cli\u003EFree energy calculations\u003C\/li\u003E\r\n\t\u003Cli\u003EAdvanced sampling methods (Metadynamics)\u003C\/li\u003E\r\n\t\u003Cli\u003EBioExcel Building Blocks (BioBB)\u003C\/li\u003E\r\n\t\u003Cli\u003EQuantum mechanics\/molecular mechanics (QM\/MM)\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EDuring the hands-on computer practicals you will make use of the BioExcel flagship software and tools: e.g. GROMACS, HADDOCK, PMX, BioBB, and CP2K. The trainers, developers and\/or experts in the use of the software, will provide guidance and support.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioexcel-summer-school-biomolecular-simulations-2021","keywords":["Proteins (proteins)","Structures (structures)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Michelle Mendonca","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_2275","edam:http:\/\/edamontology.org\/operation_2476"],"audience":"\u003Cp\u003EThe summer school is intended for researchers (primarily PhD and post-docs) using or planning to use biomolecular modeling and simulation in their everyday research. Familiarity with Linux and basic knowledge of molecular modelling software is a requirement.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Managing a bioinformatics core facility ","start_date":"2021-05-18 00:00:00","endDate":"2021-05-20 00:00:00","description":"\u003Cp\u003EThis virtual knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI\u2019s service teams, from each other, and from potential users of their services. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients \u2013 experimental researchers \u2013 become more exposed to the power of data-driven biology.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EVirtual workshop\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe workshop will involve participants learning via pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. The content will be delivered over\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E, with additional text communication over\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E.\u0026nbsp; Live sessions will include both group and individual activities, alongside optional social and networking opportunities.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will need to be available between the hours of 08:45 - 15:30 BST each day.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EProgramme may be subject\u0026nbsp;to slight changes before registration.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/managing-bioinformatics-core-facility","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003EThis workshop is aimed at new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets.\u0026nbsp; This course will \u003Cstrong\u003Enot\u003C\/strong\u003E\u0026nbsp;provide a platform for teaching hands-on bioinformatics analysis.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"20","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Cancer genomics ","start_date":"2021-05-17 00:00:00","endDate":"2021-05-21 00:00:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis course will focus on the analysis of data from genomic studies of Cancer.\u0026nbsp; Interactive sessions with lectures will give an insight into the bioinformatic concepts required to analyse such data, whilst practical sessions will enable the participants to apply statistical methods to the analysis of cancer genomics data under the guidance of the lecturers and teaching assistants.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EVirtual course\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThe course will involve participants learning via pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. The content will be delivered over \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EZoom\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/a\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E, with additional text communication over \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003ESlack\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/a\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EComputational practicals will be run on EMBL-EBI\u0027s virtual training infrastructure; this means there is no need to have a powerful computer to run exercises or a requirement to install complex software before the course. Trainers will be available to provide support, answer questions, and further explain the analysis during these practicals.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EParticipants will need to be available between the hours of 09:00-17:30 GMT each day of the course.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cancer-genomics-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Jane Reynolds","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_2640","edam:http:\/\/edamontology.org\/topic_0622"],"audience":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies in cancer research and wish to familiarise themselves with bioinformatics tools and data analysis methodologies specific to cancer data.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EFamiliarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R\/Bioconductor (basic understanding of the R syntax and ability to manipulate R objects) and the Unix\/Linux operating system.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Single-cell RNA-seq \u0026 network analysis using Galaxy and Cytoscape","start_date":"2021-04-26 00:00:00","endDate":"2021-04-30 00:00:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis course utilises Galaxy pipelines, an online open-access resource that allows even the most computer-phobic bench scientists to analyse their biological data. Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to cell cluster comparisons. In addition to running a basic pipeline, participants will explore single cell networks using Cytoscape.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EPlease note that although participants \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cstrong\u003E\u003Cspan\u003E\u003Cspan\u003Ewill not be able to use their own data during the course practicals\u003C\/span\u003E\u003C\/span\u003E\u003C\/strong\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E, there will be ample time to discuss their research and ideas with both course participants and trainers.\u0026nbsp; As part of this, participants will present \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cstrong\u003E\u003Cspan\u003E\u003Cspan\u003Elightning talks\u003C\/span\u003E\u003C\/span\u003E\u003C\/strong\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u0026nbsp;on their research topics. Near the end of the course, participants will engage in small group discussion about their research challenges and problems with each other and the trainers at the \u2018\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cstrong\u003E\u003Cspan\u003E\u003Cspan\u003ETalk with Trainers\u003C\/span\u003E\u003C\/span\u003E\u003C\/strong\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u2019.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EVirtual course\u003Cbr \/\u003E\r\nParticipants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;with additional support and communication via\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E.\u0026nbsp;\u003Cbr \/\u003E\r\nPre-recorded material will be made available to registered participants prior to the start of the course and in the week before the course there will be a brief induction session.\u0026nbsp;Computational practicals will run on EMBL-EBI\u2019s virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines.\u003Cbr \/\u003E\r\nParticipants will need to be available between the hours of 08:00-17:30 GMT each day of the course. 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The content will provide a broad overview of the subject area, and introduce participants to basic analysis of transcriptomics data using\u0026nbsp;the command line. It will also highlight key public data repositories\u0026nbsp;and methodologies that can be used to start the biological interpretation of expression\u0026nbsp;data. Topics will be delivered using a mixture of lectures, practical exercises,\u0026nbsp;and open discussions. Computational\u0026nbsp;work during the course will use small, example data-sets; and there will be no opportunity to analyse personal data.\u003C\/p\u003E\r\n\r\n\u003Ch4\u003EVirtual course\u003C\/h4\u003E\r\n\r\n\u003Cp\u003EParticipants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;with additional support and communication via\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPre-recorded material will be made available to registered participants prior to the start of the course and in the week before the course, there will be a brief induction session.\u0026nbsp;Computational practicals will run on EMBL-EBI\u0027s virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will need to be available between the hours of 09:30-17:30 GMT each day of the course. 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It will help those wanting a basic introduction to handling RNA-seq data, guiding them through several common approaches that can be applied to their own datasets. It features taught and practical sessions that cover how to interpret gene expression data and learn more about the\u0026nbsp;biological significance of certain results.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will require a basic knowledge of the Unix command line, the Ubuntu 18 operating system, and the R statistical packages. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials: \u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003ERegardless of your current knowledge, we encourage successful participants to use these, and other materials, to prepare for attending the course and future work in this area.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"NEUcrest: \u0022Big Data\u0022 workshop","start_date":"2021-03-1 00:00:00","endDate":"2021-03-4 00:00:00","description":"\u003Cp\u003EThis course will introduce participants to the concept of \u0022big data\u0022 in relation to biology, bioinformatics, and life science data. 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During the course participants will learn about genotyping experimental design, variant calling, comparative genomics using Ensembl, analyse variation data with Ensembl Variant Effect Predictor and the European Variation Archive and explore concepts of genome wide association studies (GWAS). \u0026nbsp;The content will explain how to make use of existing public data, retrieve, submit and share your data with the community.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nIt will also provide training on using R in genomics applications for crop genotyping. Trainers will cover the basics of diversity analysis using R, before analyzing various genomes to assess diversity. This will include hierarchical clustering, correlating genomic data with geographic and phenotypic information and investigating gene-phenotype relationships and microsatellites. This course will use genomic data of wheat, maize and potato as training datasets throughout the week. The course will be delivered through a combination of hands-on training sessions and lectures.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\n\u003Cstrong\u003EPlease note:\u003C\/strong\u003E\u0026nbsp;The course will use genomic data from crop plant species throughout the week. 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Undergraduate-level knowledge of plant biology would be an advantage.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPlease note this course will be taught in English. 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Working with public domain data can provide added value to data derived through a researcher\u2019s own work and additionally\u0026nbsp; inform experimental design. This course is highly relevant in the current research scenario, where an increased volume of data across the whole spectrum of biology has created both more opportunities and challenges to identifying novel perspectives and answering questions in the life sciences. This course will focus on issues around data integration, but will not include systems biology modelling or machine learning approaches.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EA major element of this course is a group project, where participants will be organised in small groups to work together on a challenge set by trainers from EMBL-EBI data resource and research teams. These will allow participants to explore the bioinformatics tools and resources introduced in the course and to apply these to a set problem, providing hands-on experience of relevance to their own research. The group work will culminate in a presentation session involving all participants on the final day of the course, giving an opportunity for wider discussion on the benefits and challenges of integrating data.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EVirtual course\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThe course will involve participants learning via pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. The content will be delivered over \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EZoom\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/a\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E, with additional text communication over \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003ESlack\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/a\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EComputational practicals will be run on EMBL-EBI\u0027s virtual training infrastructure; this means there is no need to have a powerful computer to run exercises or a requirement to install complex software before the course. 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The main focus will be on\u0026nbsp;assembly, re-sequencing, and variant calling during the analysis of higher-eukaryotes, with a particular emphasis on human genetic research. Throughout the week, more advanced topics will introduce the creation of pipelines, automation, and the scaling-up of analysis experiments.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPractical sessions will enable participants to process training datasets and apply appropriate statistical methods in their analyses. There will be no opportunity to work with personal research\u0026nbsp;data during the course.\u003C\/p\u003E\r\n\r\n\u003Ch4\u003EVirtual course\u003C\/h4\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EParticipants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EZoom\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/a\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E with additional support and communication via \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003ESlack\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/a\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E.\u0026nbsp;\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EPre-recorded material will be made available to registered participants prior to the start of the course and in the week before the course there will be a brief induction session.\u0026nbsp;Computational practicals will run on EMBL-EBI\u0027s virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EParticipants will need to be available between the hours of 09:30-17:30 GMT each day of the course. Trainers will be available to assist, answer questions and further explain the analysis during these times.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/next-generation-sequencing-bioinformatics-virtual-0","keywords":["Ensembl (5504)","European Nucleotide Archive (ENA) (5503)","European Variation Archive (5971)","DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003EThe course is aimed at PhD students and post-doctoral researchers who are starting to use high-throughput sequencing technologies and bioinformatics methods in their research. The content is most applicable for those working with eukaryotic genomes, especially in the area of human genetics and rare-disease research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will require a basic knowledge of the Unix command line and the Ubuntu 18 operating system. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\/\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022http:\/\/training.linuxfoundation.org\/resources\/\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003EPlease note: participants without basic knowledge of these resources will have difficulty in completing the practical sessions.\u003C\/span\u003E\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI workshop: University of Pavia, 2021 (Virtual)","start_date":"2021-02-1 00:00:00","endDate":"2021-02-11 00:00:00","description":"\u003Cp\u003EThis series of workshops will explore EMBL-EBI data resources for genomics,\u0026nbsp;transcriptomics,\u0026nbsp;protein sequences, structures and interactions,\u0026nbsp;and chemical biology. Each half-day workshop will introduce participants to\u0026nbsp;browsing, searching, retrieving, and conducting a basic analysis of a wide range of biological data types.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETwo workshops will cover the Ensembl genome browser, where researchers can explore annotated genomes and features of interest including genes, transcripts, and variants. Participants will also be introduced to the Variant Effect Predictor (VEP) tool and BioMart for bulk data download.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EFunctional genomics resources - Array Express, Expression Atlas - will introduce public data derived from transcriptomics experiments and provide instruction on how to begin investigating biological functions. Participants will also cover the Single-cell Expression Atlas and the expression data from individual cell sequencing.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThree workshops will explore resources dedicated to protein data, covering UniProt, the PDBe, IntAct, the Complex Portal, and Reactome. These topics will provide overviews of protein sequence, structure, and interactions; allowing participants to gain a greater understanding of the role played by proteins in the cell.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe final workshop will cover the EBI\u0027s chemical biology resources ChEBI and MetaboLights. Participants will learn how to access information on chemical entities of biological interest, and the myriad metabolites found in metabolomics experiements.\u003C\/p\u003E\r\n\r\n\u003Ch4\u003EVirtual workshop\u003C\/h4\u003E\r\n\r\n\u003Cp\u003EParticipants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q\u0026amp;A sessions. 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Live sessions will be delivered using\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;with additional support and communication from the host, trainer and, resource specialists in the chat stream.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-university-pavia-2021","keywords":["Ensembl (5504)","Expression Atlas (5511)","ArrayExpress Archive of Functional Genomics Data (5488)","UniProt: The Universal Protein Resource (5544)","Protein Data Bank in Europe (5526)","IntAct Molecular Interaction Database (5516)","Complex Portal (5963)","Reactome pathways database (5538)","Chemical Entities of Biological Interest (5495)","MetaboLights: Metabolomics repository and reference database (5523)","DNA \u0026 RNA (dna-rna)","Gene expression (gene-expression)","Proteins (proteins)","Structures (structures)","Systems (systems)","Chemical biology (chemical-biology)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Claudia Binda","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_0622","edam:http:\/\/edamontology.org\/topic_3308","edam:http:\/\/edamontology.org\/topic_0085","edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/data_1460","edam:http:\/\/edamontology.org\/topic_0602","edam:http:\/\/edamontology.org\/topic_3172"],"audience":"\u003Cp\u003EThis workshop is aimed at PhD students within the PhD programme \u0022Genetics, Molecular and Cellular Biology\u0022 (University of Pavia) and the PhD programmme \u0022Biomolecular Sciences and Biotechnology\u0022 (IUSS, University School for Advanced Studies Pavia.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ENo knowledge of programming is required, but an undergraduate level knowledge of biology or\u0026nbsp;molecular biology would be useful.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"By invitation","maximumAttendeeCapacity":"30","sponsor":[null,null,null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Single-cell RNA-seq analysis using R","start_date":"2021-02-1 00:00:00","endDate":"2021-02-5 00:00:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EThis course covers the analysis of scRNA-seq data using R and command line tools. Participants will be guided through droplet-based\u0026nbsp;scRNA-seq analysis pipelines from raw reads to cell clusters. They will explore and interpret data using R as well as the Single Cell Expression Atlas. Finally participants will put their knowledge into practice through a group challenge on the final two days.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EPlease note that participants\u0026nbsp;\u003Cstrong\u003Ewill not analyse their own data as part of the course\u003C\/strong\u003E. There will, however, be ample opportunity to discuss their research and ideas with other course participants and trainers.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/single-cell-rna-seq-analysis-using-r-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003EThis course is aimed at wet-lab researchers who are generating, planning on generating, or working with single cell RNA sequencing data.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EParticipants will require a basic knowledge of the Unix command line, the Ubuntu 18 operating system and the R statistical packages. 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Trainees will receive training on viral genome assembly, comparative viral genomics and downstream applications of this data in research and applied contexts. Trainers will focus practical sessions on the analysis of Illumina SARS-CoV-2 sequences.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis online workshop will be delivered on Zoom and comprise a blend of live lectures and hands-on practicals delivered by trainers across Latin America. Certificates will be provided to mark successful completion of this workshop. Sessions on Friday 4th December will be livestreamed on YouTube and made freely available on the platform thereafter. There will be an opportunity to deliver a short presentation about your work to other trainees.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-applied-bioinformatics-molecular-epidemiology-and-sars-cov-2-pandemic","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_3305","edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/topic_0781","edam:http:\/\/edamontology.org\/operation_2419"],"audience":"\u003Cp\u003EThis course is suitable for postgraduate (MSc-level and above) scientists within Latin America (excluding Chile and Uruguay) who are working with or generating genomic datasets related to SARS-CoV-2. Ideally, trainees will be working in the field of virology, and performing sequencing and\/or analysing viral sequences, especially those within the\u0026nbsp;\u003Cem\u003Ecoronaviridae\u0026nbsp;\u003C\/em\u003Efamily. We welcome applications from universities, research centres, hospitals, public health, and private laboratories.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EScientists from underrepresented ethnic and gender groups are especially encouraged to apply for this workshop.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease note this course will be taught in English, however the trainers are fluent in either Spanish or Portuguese and can offer language support where feasible. Attendance priority will be given to those who have not attended a CABANA event yet.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EUndergraduate-level knowledge of biology would be advantageous. You will also require access to a computer for the duration of the workshop. While most practicals are browser-based, a few will require a UNIX environment. Trainees will therefore require a basic knowledge of the Unix command line.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EWe recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003ETraining will be delivered via\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E; trainees need to ensure they have working audio and microphones.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA: Bioinformatics for plant biology (Postponed until 2021)","start_date":"2020-11-30 00:00:00","endDate":"2020-12-4 00:00:00","description":"\u003Cp\u003E\u003Cstrong\u003EPlease note\u003C\/strong\u003E\u0026nbsp;\u003Cstrong\u003Ethis course will be postponed to 2021\u003C\/strong\u003E, and as further information about the course becomes available we will update this page. By registering your interest using the button above, we will inform you applications open for the course. For details of previous courses hosted at EMBL-EBI please look at our\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/handson?ebi-year%5B2019%5D=2019\u0022\u003E2019 onsite listing\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-bioinformatics-plant-biology-postponed-until-2021","hostInstitution":{"@type":"Organization","name":"University of Costa Rica (UCR)","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University of Costa Rica (UCR)","address":{"@type":"PostalAddress","streetAddress":"Ciudad universitaria Rodrigo Facio Brenes","addressCountry":"CR","addressRegion":"San Jose","postalCode":""}},"audience":null,"eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":null,"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Structural bioinformatics (Virtual)","start_date":"2020-11-23 00:00:00","endDate":"2020-11-27 00:00:00","description":"\u003Cp\u003EStructural biology, determining the three-dimensional shapes of biomacromolecules and their complexes, can tell us a lot about how these molecules function and the roles they play within a cell. Data derived from structure determination experiments enables life-science researchers to address a wide variety of questions.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThis course explores bioinformatics data resources and tools for the investigation, analysis, and\u0026nbsp;interpretation\u0026nbsp;of biomacromolecular structures. It will focus on how best to analyse and interpret available structural data to gain useful information given specific research contexts. The course content will also cover predicting protein structure and function, and exploring interactions with other macromolecules as well as with low-MW compounds.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThis course will be a virtual event delivered via a mixture of live-streamed sessions, pre-recorded lectures, and tutorials with live support. We will be using\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;to run the live stream sessions (all fully password protected) with support provided by\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E. In order to make the most out of the course, you should make sure to have a stable internet connection throughout the week. There will also be networking and short social activities throughout the course.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nSelected participants will be sent materials prior to the course. These might include pre-recorded talks and required reading or online training that will be essential to fully understand the course.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/structural-bioinformatics-virtual","keywords":["Structures (structures)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_1317"],"audience":"\u003Cp\u003EThis course is aimed at wet-lab scientists generating structural data or scientists utilising structural data in their analysis and\/or interpretation. No previous experience in the field of structural bioinformatics is required, however a basic knowledge of protein structure would be of benefit.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EA working knowledge of the Linux operating system and ability to use the command line would be a benefit but is not mandatory.\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA train the trainer workshop for XMXP20","start_date":"2020-11-11 00:00:00","endDate":"2020-11-11 00:00:00","description":"\u003Cp\u003EThis highly interactive virtual workshop takes place within the\u0026nbsp;\u003Ca href=\u0022https:\/\/x-meeting.com\/events\/xmxp2020\u0022\u003EX-meeting eXperience 2020\u003C\/a\u003E, organized by\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ab3c.org.br\/site\/\u0022\u003EAB3C\u003C\/a\u003E. It will provide new trainers with knowledge, skills, guidance and tips for developing and delivering training. Trainees will explore a range of methods to enable and encourage learning, examine the requirements for a successful course and acquire appropriate feedback. The workshop itself will depend on trainee participation in group activities.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe workshop will:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003Eprovide guidance on general training techniques and appropriate use of methods based on learner needs, including some general \u0027DO\u0027s\u0027 and \u0027DO NOTs\u0027 for successful training\u003C\/li\u003E\r\n\t\u003Cli\u003Eprovide a framework for successful curriculum design and further development, to enable trainers to build a course appropriate to their learners\u0027 needs\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EThe workshop will take place virtually via\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-train-trainer-workshop-xmxp20","keywords":["Training (Training)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Piraveen Gopalasingam, Mindy Stephania Miranda, Nicole Scherer","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003EThis is a highly interactive virtual workshop which will be delivered fully in Portuguese. Applications are open for researchers based in Latin America.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESelection criteria:\u003Cbr \/\u003E\r\nThere are a number of criteria upon which selection of participants for this workshop will be made. Candidates should be able to demonstrate:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EThey are at late-stage PhD level OR have equivalent years of research experience\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are working in a Latin American institution and are likely to remain in the institution for the next year or more\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are actively involved in a research project and actively using bioinformatics tools \/ methods\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have a strong interest in training and have been involved in some training prior to joining the course\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have identified a need \/ gap where training could be provided, and have thought about potential training they would like to deliver\u003C\/li\u003E\r\n\t\u003Cli\u003EThe ideal candidate will have 3+ years of research experience which includes a bioinformatics component, and a strong interest in developing or delivering bioinformatics training. You do NOT have to be a bioinformatician to apply.\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EEarly-stage researchers and researchers from underrepresented gender and ethnic groups are especially encouraged to apply.\u0026nbsp;\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"First come, first served","maximumAttendeeCapacity":"20","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Metagenomics bioinformatics (Virtual)","start_date":"2020-11-2 00:00:00","endDate":"2020-11-6 00:00:00","description":"\u003Cp\u003EGain knowledge of\u0026nbsp;the tools, processes and analysis approaches used in the field of metagenomics.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course will cover the metagenomics data analysis workflow from the point of newly generated sequence data. Participants\u0026nbsp;will explore the use of publicly available resources and tools to manage, share, analyse and interpret metagenomics data. The content will include\u0026nbsp;issues\u0026nbsp;of data quality control and how to submit\u0026nbsp;to public repositories. While sessions will detail\u0026nbsp;marker-gene and whole-genome\u0026nbsp;shotgun (WGS) approaches;\u0026nbsp;the\u0026nbsp;primary focus will be on assembly-based approaches. Discussions will also explore considerations when assembling genome data, the analysis that can be carried out by MGnify on such datasets, and what downstream analysis options and tools are available.\u003C\/p\u003E\r\n\r\n\u003Ch4\u003EVirtual course\u003C\/h4\u003E\r\n\r\n\u003Cp\u003EThe course content will involve\u0026nbsp;participants learning via pre-recorded lectures, live presentations and\u0026nbsp;trainer Q\u0026amp;A sessions. Practical experience will be developed through group activities and computational exercises. Sessions will be delivered over\u0026nbsp;\u003Ca href=\u0022https:\/\/zoom.us\/\u0022\u003EZoom\u003C\/a\u003E\u0026nbsp;with additional text communication over\u0026nbsp;\u003Ca href=\u0022https:\/\/slack.com\/intl\/en-gb\/\u0022\u003ESlack\u003C\/a\u003E. Trainers will be available\u0026nbsp;to assist, answer questions\u0026nbsp;and further explain the analysis during these times. Computational practicals\u0026nbsp;will be run in\u0026nbsp;\u003Ca href=\u0022https:\/\/www.docker.com\/\u0022\u003EDocker containers\u003C\/a\u003E\u0026nbsp;operating on EMBL-EBI\u0027s\u0026nbsp;virtual training infrastructure; this means there is no need to have a\u0026nbsp;powerful computer to run exercises or a requirement to\u0026nbsp;install complex\u0026nbsp;software before the course.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will need to be available between the hours of 09:00-17:00 GMT each day of the course.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/metagenomics-bioinformatics-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_3174"],"audience":"\u003Cp\u003EThis course is aimed at life scientists who are working in the field of metagenomics and are currently in the early stages of data analysis. Participants should have some prior experience of using bioinformatics in their research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe practical sessions in the course require a basic understanding of the Unix command line and the R statistics package. Participants should ensure that they\u0026nbsp;complete these free tutorials before attending the course:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA train the trainer workshop for ISCB-Latin America 2020","start_date":"2020-10-22 00:00:00","endDate":"2020-10-23 00:00:00","description":"\u003Cp\u003EThis virtual workshop takes place within the\u0026nbsp;\u003Ca href=\u0022https:\/\/www.iscb.org\/iscb-latinamerica2020\u0022\u003EISCB-LA SoIBio BioNetMX 2020 symposium\u003C\/a\u003E. It\u0026nbsp;will provide new trainers with knowledge, skills, guidance and tips for developing and delivering training. Participants will explore a range of methods to enable and encourage learning, examine the requirements for a successful course and acquire appropriate feedback.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe workshop will:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003Eprovide guidance on general training techniques and appropriate use of methods based on learner needs, including some general \u0027DO\u0027s\u0027 and \u0027DO NOTs\u0027 for successful training\u003C\/li\u003E\r\n\t\u003Cli\u003Eprovide a framework for successful curriculum design and further development, to enable trainers to build a course appropriate to their learners\u0027 needs\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EThe workshop will take place virtually via\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/zoom.us\u0022\u003EZoom\u003C\/a\u003E.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-train-trainer-workshop-iscb-latin-america-2020","keywords":["Training (Training)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Patricia Carvajal Lopez, Maria Trinidad Bernardi, Mindy Stephania Miranda","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"audience":"\u003Cp\u003EThis\u0026nbsp;is a highly interactive virtual workshop which will be delivered simultaneously in\u0026nbsp;Spanish. Applications are open for researchers based in Latin America.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESelection criteria:\u003Cbr \/\u003E\r\nThere are a number of criteria upon which selection of participants for this workshop will be made. Candidates should be able to demonstrate:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EThey are at late-stage PhD level\u0026nbsp;OR have equivalent years of research experience\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are working in a Latin American institution and are likely to remain in the institution for the next year or more\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are actively involved in a research project and actively using bioinformatics tools \/ methods\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have a strong interest in training and have been involved in some training prior to joining the course\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have identified a need \/ gap where training could be provided, and have thought about potential training they would like to deliver\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EThe ideal candidate will have 3+ years of research experience which includes a bioinformatics component, and a strong interest in developing or delivering bioinformatics training. You do NOT have to be a bioinformatician to apply.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EEarly-stage researchers and researchers from underrepresented ethnic groups are especially encouraged to apply.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":null,"maximumAttendeeCapacity":"20","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Summer school in bioinformatics (Virtual)","start_date":"2020-10-12 00:00:00","endDate":"2020-10-16 00:00:00","description":"\u003Cp\u003EThis course provides an introduction to the use of bioinformatics in biological research, giving participants guidance for using bioinformatics in their work whilst also providing hands-on training in tools and resources appropriate to their research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will initially be introduced to bioinformatics theory and practice, including best practices for undertaking bioinformatics analysis, data management and reproducibility. To enable specific exploration of resources in their particular field of interest, participants will be divided into focused groups to work on a small project set by EMBL-EBI resource and research staff, ending in a presentation from each group on the final day of the course to bring together learnings from all participants.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThe course includes training and mentoring by experts from EMBL-EBI and external institutes.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EGroup projects\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EA major element of this course is a group project, where participants will be placed in small groups to work together on a challenge set by trainers from EMBL-EBI. This allows people to explore the bioinformatics tools and resources available in their area of interest and apply them to a set problem, providing participants with hands-on experience relevant to their own research. The group work will culminate in a presentation session involving all participants on the final day of the course, giving an opportunity for wider discussion on the benefits and challenges of working with biological data.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EGroups are mentored and supported by the trainers who set the initial challenge, but the groups will be responsible for driving their projects forward, with all members expected to take an active role. Groups are pre-organised before the course, and all group members will be sent some short \u201chomework\u201d in preparation for their project work prior to the start of the course.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EBasic outlines of the projects on offer this year are given below. In your application you must indicate your first and second choice of project, based on which you think would benefit your research most. Not all projects may be offered, and final decisions on which projects will be run during the course will be made based on the number of applicants per project.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThis year\u2019s projects are as follows:\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003ENetworks and pathways\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis project will make use of gene expression data (RNA-seq) to build protein-protein interaction networks, which can be used to explore functional relationships between the (potentially) expressed protein products. You will use Cytoscape to visualise protein networks, identify key regulators of biological pathways and explore biological function through network analysis, integration and co-visualisation of additional data, and ontology\/functional enrichment analysis - helping to build a better view of the wider biological context.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EModelling cell signalling pathways\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003ECurating models of biological processes is an effective training in computational systems biology, where the curators gain an integrative knowledge of biological systems, modelling and bioinformatics. You will learn to encode computational models of signalling pathways from a recent publication using COPASI and how to reproduce the simulation results. Furthermore, you will learn how to annotate models and re-use pre-existing models from open repositories such as BioModels.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EGenome variation across human populations\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003ENatural variation between individuals or between different human populations is a result of genome mutations throughout evolutionary history. Some mutations may become fixed because of their beneficial effect while most drift among individuals. During this project, you will investigate genomic variation between two separate human populations of European and Asian descent. Using sequence data from a number of individuals from each population, you will use a range of bioinformatics tools to discover variants that exist between them. In the second section of the project, you will attempt to analyse the functional consequences of the variants you have identified, linking them to phenotypes.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EMetabolic network engineering using a systems model-based approach\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EMetabolic pathway analysis helps to identify the structure and dynamics of a metabolic network and thereby also allow us to have an insight into cell physiology which is the foundation of metabolic engineering. You will work with a curated model related to a metabolism network chosen from BioModels, and learn how to carry out computational analyses to find common patterns in the networks. These might include computing feasible pathways through the network and minimal reactions to knock out specific metabolic functions, along with visualisation and exploration to gain a further insight into the results.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EFinding and interpreting publicly available structural data\u0026nbsp;\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThis project will introduce you to the wealth of publicly available structural data and give you the opportunity to investigate how this data can be used to analyse macromolecular structures. You will firstly explore the search and entry pages at PDBe to identify the type of data available for analysis. Then using this knowledge, you will discover how to access this data programmatically and analyse a subset of your results to interpret biological relevance.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003E\u003Cstrong\u003EFunctional annotation of proteins\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EFunctional annotation refers to discovering the functions of proteins. Participants will\u0026nbsp; annotate a protein of interest which has not been annotated previously, either manually or by any UniProt automatic system. Participants will use different ways to discover the function of their protein of interest from alignment to machine learning. You will learn the different annotation types in UniProtKB and how to use the UniProt resources for their investigation. 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These might include pre-recorded talks and required reading that will be essential to fully understand the course.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mathematics-life-modelling-molecular-mechanisms-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Rebecca Nicholl","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_3315","edam:http:\/\/edamontology.org\/data_0950"],"audience":"\u003Cp\u003EThis course is aimed at experimental biologists, bioinformaticians and mathematicians who have just started in systems biology, are familiar with the basic terminology in this field and who are now keen on gaining a better knowledge of systems biology modelling approaches to understand biological and biomedical problems.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EA working knowledge of the Linux operating system and ability to use the command line or experience of using a programming language (e.g Python) would be a benefit but is not mandatory.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAn undergraduate knowledge of molecular and cellular biology or some background in mathematics is highly beneficial.\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Ensembl API workshop, University of Cambridge (Virtual)","start_date":"2020-09-2 00:00:00","endDate":"2020-09-2 00:00:00","description":"\u003Cp\u003EThe Ensembl project provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website. The workshop covers how to use the Ensembl REST APIs, including understanding the major endpoints and how to write Python\/Perl\/R scripts to call them.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nFeedback from previous courses:\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u0022Wish I had taken the course long time ago. Didn\u0027t know before how good and powerful APIs are!\u0022 API workshop, EMBL-EBI, January 2016\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u0022I really enjoyed the course, and the ENSEMBL API will become a very relevant part of my toolset.\u0022 API workshop, Cambridge, December 2013\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIf you think you\u0027d like to host a similar course at your institute, you can find out more on the\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ensembl.info\/workshops\/\u0022\u003EEnsembl workshops page\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ensembl-api-workshop-university-cambridge-virtual","keywords":["Ensembl (5504)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Michal Szpak","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/operation_3209"],"audience":"\u003Cp\u003EBioinformaticians and wet-lab biologists who can program in Perl, Python or R.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"First come, first served","maximumAttendeeCapacity":null,"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Managing a bioinformatics core facility (Virtual)","start_date":"2020-08-18 00:00:00","endDate":"2020-08-20 00:00:00","description":"\u003Cp\u003EThis knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI\u2019s service teams, from each other, and from potential users of their services. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients \u2013 experimental researchers \u2013 become more exposed to the power of data-driven biology.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/managing-bioinformatics-core-facility-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/operation_3760","edam:http:\/\/edamontology.org\/topic_0091"],"audience":"\u003Cp\u003EThis workshop is aimed at new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets.\u0026nbsp; This course will \u003Cstrong\u003Enot\u003C\/strong\u003E\u0026nbsp;provide a platform for teaching hands-on bioinformatics analysis.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"15","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Cancer genomics (Virtual)","start_date":"2020-07-6 00:00:00","endDate":"2020-07-10 00:00:00","description":"\u003Cp\u003EThis course will focus on the analysis of data from genomic studies of Cancer.\u0026nbsp; Lectures will give an insight into the bioinformatic concepts required to analyse such data, whilst practical sessions will enable the participants to apply statistical methods to the analysis of cancer genomics data under the guidance of the lecturers and teaching assistants.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cancer-genomics-virtual-0","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Rebecca Nicholl","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_2640","edam:http:\/\/edamontology.org\/topic_0622"],"audience":"\u003Cp\u003EThis course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies in cancer research and wish to familiarise themselves with bioinformatics tools and data analysis methodologies specific to cancer data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EFamiliarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R\/Bioconductor (basic understanding of the R syntax and ability to manipulate R objects) and the Unix\/Linux operating system.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"20","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Data collection, analysis and interpretation for genomic medicine","start_date":"2020-06-23 00:00:00","endDate":"2020-06-25 00:00:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EThis workshop will introduce cloud technologies for creating bioinformatics pipelines relevant to clinical decision making. The content will guide participants through the process of building data flows, using GA4GH standards and infrastructure available from ELIXIR nodes and the EMBL-EBI. Expertise and support will be available during the workshop from the trainers, allowing participants to tailor pipelines to suit their own needs, data types and analysis methods.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThe workshop content will cover aspects of data storage and collection with regards to standards and file formats; sharing data and metadata within the cloud community; visualisation and analysis of data with regards to end-point clinical decision making. \u0026nbsp;\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/data-collection-analysis-and-interpretation-genomic-medicine","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_0199"],"audience":"\u003Cp dir=\u0022ltr\u0022\u003EThis workshop is aimed at bioinformaticians, software engineers and data analysts working in genomic medicine. Participants are likely to be working to set up and operate compute infrastructure and analysis pipeline to support clinical decision making in genomic medicine.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EParticipants will require a basic knowledge of computational script writing and command line tools. Knowledge of next generation sequencing technologies and familiarity with genomic data will be useful for comprehending the content.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30 places","sponsor":[null,null,null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"BioExcel summer school on biomolecular simulations 2020","start_date":"2020-06-22 00:00:00","endDate":"2020-06-26 00:00:00","description":"\u003Cp\u003E\u0026nbsp;The summer school will include lectures and hands-on sessions on the following topics:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EMolecular Dynamics simulations\u003C\/li\u003E\r\n\t\u003Cli\u003EBiomolecular Docking\u003C\/li\u003E\r\n\t\u003Cli\u003EQM\/MM\u003C\/li\u003E\r\n\t\u003Cli\u003EFree energy calculations\u003C\/li\u003E\r\n\t\u003Cli\u003EAdvanced sampling methods (Metadynamics)\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EDuring the hands-on computer practicals you will work on a use case integrating the various topics above making use, among others, of the BioExcel flagship software (GROMACS, HADDOCK, PMX).\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioexcel-summer-school-biomolecular-simulations-2020","keywords":["BioExcel (11474)"],"hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Michelle Mendonca","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/operation_2476","edam:http:\/\/edamontology.org\/topic_2275"],"audience":"\u003Cp\u003EThe summer school is intended for researchers (primarily PhD and post-docs) using or planning to use biomolecular modeling and simulation in their everyday research.\u0026nbsp;Familiarity with Linux and some basic knowledge of molecular modelling software is a requirement.\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":null,"maximumAttendeeCapacity":"30 Places","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Starting single cell RNA-seq analysis","start_date":"2020-06-1 00:00:00","endDate":"2020-06-5 00:00:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EThis course utilises Galaxy pipelines, an online open-access resource that allows even the most computer-phobic bench scientists to analyse their biological data. Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to cell cluster comparisons using data extracted from the Single Cell Expression Atlas. In addition to running a basic pipeline, participants will explore the variety of options within the Galaxy resource and individually analyse a given dataset. The results will be compared across the cohort to assess reproducibility and demonstrate the effect of analytical choice on research output. Finally, participants will learn about data submission, resources, and standards within the single cell field.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease note that participants will not be able to use their own data during the course practicals. However, there will be plenty of time to discuss their research and exchange ideas with other participants and the trainers. Opportunities will include poster sessions, evening discussions and small group chats\u0026nbsp;with the trainers.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/starting-single-cell-rna-seq-analysis-virtual","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_3170"],"audience":"\u003Cp\u003EThis course is aimed at researchers who are generating, planning on generating, or working with single cell RNA sequencing data.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will be using a Galaxy resource in-depth. Participants may also be asked to do brief coding in R.\u0026nbsp;Please ensure that you complete the free tutorials\u0026nbsp;before you attend the course:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EIntroduction to Galaxy:\u0026nbsp;\u003Ca href=\u0022https:\/\/galaxyproject.org\/tutorials\/g101\/\u0022\u003Ehttps:\/\/galaxyproject.org\/tutorials\/g101\/\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\r\n\t\u003Cp\u003EBasic R concept tutorials: \u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/p\u003E\r\n\t\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EThere are other tutorials here, although they are not required:\u0026nbsp;\u003Ca href=\u0022https:\/\/galaxyproject.org\/learn\/\u0022\u003Ehttps:\/\/galaxyproject.org\/learn\/\u003C\/a\u003E\u003C\/p\u003E\r\n","eventType":"Virtual course","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA workshop: Exploring biological networks and its application in health and disease","start_date":"2020-05-4 00:00:00","endDate":"2020-05-8 00:00:00","description":"\u003Cp\u003EThis workshop will introduce open-source tools for creating, visualizing and analysing biological networks oriented towards the study of pathogens. Training will be provided on computational tools and databases such as Reactome, Cytoscape, Gephi for graph visualization and analyses, MetaFlux, Pathway Tools, BioCyc for reconstruction of pathway\/genome databases using omics data, and Target Pathogen for the discovery of targets using integrative approaches. The main principles of network analysis will be covered as well as its applications to health and disease.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-exploring-biological-networks-and-its-application-health-and-disease","keywords":["CABANA (11472)"],"hostInstitution":{"@type":"Organization","name":"Center of Data and Knowledge Integration for Health - CIDACS, Instituto Gon\u00e7alo Moniz (IGM) - FIOCRUZ","url":"","email":""},"contact":{"@type":"Person","name":"Maria Bernardi; Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Center of Data and Knowledge Integration for Health - CIDACS, Instituto Gon\u00e7alo Moniz (IGM) - FIOCRUZ","address":{"@type":"PostalAddress","streetAddress":"R. Mundo 121","addressCountry":"BR","addressRegion":"Salvador","postalCode":"40296-710"}},"topic":["edam:http:\/\/edamontology.org\/topic_0602","edam:http:\/\/edamontology.org\/operation_3463","edam:http:\/\/edamontology.org\/operation_3660"],"audience":"\u003Cp\u003EThe workshop is aimed at biologists and computer scientists wanting to learn the basics of network analysis and biological data curation for clinically relevant pathogens. Trainees should be undertaking research at postgraduate-level upwards focusing on infectious diseases. No previous experience using interaction data resources is needed.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease note this course will be taught in English, however the trainers are fluent in either Spanish\/Portuguese, and can offer language support where feasible. Priority will also be given to those who have not attended a CABANA event yet.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003ETravel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form. Up to 30% of workshop delegates can be awarded fellowships and these\u0026nbsp;are normally awarded by reimbursement after the event.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003Cbr \/\u003E\r\nParticipants will require a basic knowledge of the Unix command line, and the R statistical packages. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"25 places","sponsor":[null,null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Workshop: Managing a bioinformatics core facility","start_date":"2020-03-31 00:00:00","endDate":"2020-04-2 00:00:00","description":"\u003Cp\u003EThis knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI\u2019s service teams, from each other, and from potential users of their services. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients \u2013 experimental researchers \u2013 become more exposed to the power of data-driven biology.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThe workshops will allow participants to share experiences, discuss challenges and solutions that they face, and plan ways to cope with the ever changing demands raised by the molecular life science field. It will include sessions to learn from data providers at EMBL-EBI, hear how others have tackled common problems, and work together to design core services.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease note this course will NOT provide bioinformatics training.\u003Cbr \/\u003E\r\n\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EDuring this course you will learn about:\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003ECore service design\u003C\/li\u003E\r\n\t\u003Cli\u003ETechnical aspects of bioinformatics core facility management\u003C\/li\u003E\r\n\t\u003Cli\u003EFunding and financing your core facility\u003C\/li\u003E\r\n\t\u003Cli\u003EBuilding your group\u003C\/li\u003E\r\n\t\u003Cli\u003EHPC clusters, (secure) data needs\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-managing-bioinformatics-core-facility","keywords":["CABANA (11472)"],"hostInstitution":{"@type":"Organization","name":"Fiocruz - Pal\u00e1cio Itabora\u00ed","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte, Nicole Scherer, Thiago Parente","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Fiocruz - Pal\u00e1cio Itabora\u00ed","address":{"@type":"PostalAddress","streetAddress":"R. Visc. of Itabora\u00ed188 ","addressCountry":"BR","addressRegion":"Petr\u00f3polis","postalCode":"25655-031"}},"topic":["edam:http:\/\/edamontology.org\/operation_3760"],"audience":"\u003Cp\u003EThis course is intended for new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets. This course will not provide a platform for teaching hands-on bioinformatics analysis.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003Cbr \/\u003E\r\nPlease note this course will be taught in English, however some trainers are fluent in either Spanish\/Portuguese, and can offer language support where feasible. Priority will also be given to those who have not attended a CABANA event yet.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u0026nbsp;Due to funding restrictions we are unable to award fellowships to those employed in Chile and Uruguay.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"15 places","sponsor":[null,null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics resources for protein biology","start_date":"2020-03-10 00:00:00","endDate":"2020-03-12 00:00:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EAre you aware of the wide range of protein data resources that can easily be accessed and explored to enhance your research? Do you want to know more about the sequence of your protein and its functions? Wondered whether a structure of your protein exists and how to explore it? Want to know more about the potential complexes and reaction pathways your protein of interest is involved in, giving you a better overview of its biological context?\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThis three day workshop will introduce you to data resources and tools developed by EMBL-EBI that can help you in your protein studies. Each day will focus on a particular protein topic, with the aim of helping you get more from your data and also to explore publically-available data that can further support your research.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-resources-protein-biology","keywords":["Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Charlotte Pearton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003EThis workshop is aimed at anyone interested in finding out more about protein biology. No prior experience of bioinformatics is required, but an undergraduate level understanding of biology would be of benefit.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introduction to multiomics data integration and visualisation","start_date":"2020-03-2 00:00:00","endDate":"2020-03-6 00:00:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EWith the increase in the volume of data across the whole spectrum of biology, more opportunities as well as challenges have been created to identify novel perspectives and answer questions in life sciences. This may also include public domain data, which can provide added value to data derived through researcher\u2019s own work and inform experimental design. This introductory course will highlight the challenges that researchers face in integrating multiomics data sets using biological examples. The course will focus on the use of public data resources and open access tools for enabling integrated working, with an emphasis on data visualisation. This course will not include systems biology modelling or machine learning.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EA major element of this course is a group project, where participants will be placed in small groups to work together on a challenge set by trainers from EMBL-EBI data resource and research teams.\u0026nbsp;This allows people to explore the bioinformatics tools and resources introduced in the course and to apply these to a set problem, providing hands-on experience of relevance to their own research. The group work will culminate in a presentation session involving all participants on the final day of the course, giving an opportunity for wider discussion on the benefits and challenges of integrating data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-multiomics-data-integration-and-visualisation","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3391"],"audience":"\u003Cp dir=\u0022ltr\u0022\u003EThis introductory course is aimed at biologists who are embarking on multiomics projects and computational biologists \/ bioinformaticians who wish to gain knowledge of the biological challenges when working with integrated datasets.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003ESome practical sessions in the course require a basic understanding of the Unix command line and the R statistics package. If you are not already familiar with these then please ensure that you complete these free tutorials before you attend the course:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EFor advanced-level training in using large-scale multiomics data and machine learning to infer biological models you may wish to consider our course on\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/events\/2019\/systems-biology-large-datasets-biological-insight\u0022\u003ESystems Biology: From large datasets to biological insight\u003C\/a\u003E.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Workshop: NGS analysis applied to virome sequencing in agricultural systems","start_date":"2020-02-24 00:00:00","endDate":"2020-03-4 00:00:00","description":"\u003Cp\u003EVirome sequencing is a high throughput method to identify and classify communities of viruses, not only in plants but also animals and humans. We will focus on the sequencing of small-interfering RNAs (siRNAs) to discover the virus population in plant samples. The resulting information analysis relies on viral databases that are constantly evolving, and software tools constantly being updated. Therefore, we will explore all of these aspects in this workshop.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThe workshop will consist of two modules: i) a wet bench workshop for training around the experimental design and DNA library preparation, and ii) a bioinformatics module overviewing multiple applications of Virome Sequencing, and its application in agricultural systems. People interested in this workshop may apply for both modules (limited to 10 participants) or only for the bioinformatics module (limited to 25 participants). Selection of participants will be based on\u0026nbsp;\u003Ca href=\u0022https:\/\/forms.gle\/WhSEFTwh82tvK4TQ9\u0022\u003Eapplication form\u003C\/a\u003E.\u0026nbsp;\u003Cbr \/\u003E\r\nThe bioinformatics module includes a pipeline for detailed computational analysis of virome data; including genomic analysis tools such as Virus-DetectW, phylogenetic and recombination analysis with MegaX and RDP and network \u0026nbsp;analysis using the statistical package R. Also, publicly available resources for virus analysis and their application will be implemented during the workshop.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThe detection of pathogens is an essential task for people working on agricultural systems. In recent years the use of sequencing technologies has enabled the discovery and description of new viruses, even communities of pathogenic entities within crops, for example potato and sweet potato. This is relevant for surveillance and to develop strategies to control these pathogens across borders.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-ngs-analysis-applied-virome-sequencing-agricultural-systems","keywords":["CABANA (11472)"],"hostInstitution":{"@type":"Organization","name":"University of Costa Rica (UCR)","url":"","email":""},"contact":{"@type":"Person","name":"CABANA UCR Costa Rica, Rebeca Campos-Sanchez, Jan Kreuze, Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University of Costa Rica (UCR)","address":{"@type":"PostalAddress","streetAddress":"Ciudad universitaria Rodrigo Facio Brenes","addressCountry":"CR","addressRegion":"San Jos\u00e9","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3168","edam:http:\/\/edamontology.org\/topic_0781","edam:http:\/\/edamontology.org\/topic_3678","edam:http:\/\/edamontology.org\/topic_0622"],"audience":"\u003Cp\u003EThis course is aimed\u0026nbsp;at wet-lab researchers at any career stage within Latin America undertaking pathogen population genetics and surveillance, interested in applying next generation sequencing to virus identification. Those working in plant protection organizations and\/or academia are welcome to apply, and priority will be given to those who have not yet attended a CABANA workshop.\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\n\u003Cstrong\u003EPlease note this course will be taught in English, however the trainers are fluent in Spanish, and can offer language support where feasible.\u0026nbsp;\u003Cbr \/\u003E\r\nA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form. Priority will be given to those who have not previously been awarded a CABANA fellowship.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EKnowledge in R\u0026nbsp;and NGS technologies is required. Therefore, these free resources should be studied beforehand:\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\u0026nbsp;\u003Ca href=\u0022https:\/\/r4ds.had.co.nz\/tidy-data.html\u0022\u003Ehttps:\/\/r4ds.had.co.nz\/tidy-data.html\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Ch3\u003ELearning outcomes\u003C\/h3\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"10 places wet-lab, 25 places computational","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Mining PDBe and PDBe-KB using a graph database","start_date":"2020-02-18 00:00:00","endDate":"2020-02-20 00:00:00","description":"\u003Cp\u003EThis workshop covers the use of the PDBe\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/pdbe-kb\/schema\u0022\u003Egraph database\u003C\/a\u003E\u0026nbsp;to extract data for solving complex structural biology queries. It will introduce the PDBe graph database and how to write Cypher queries to retrieve data of interest. Workshop participants will be able to use the graph database to explore data relevant to their own research with support and guidance from the development team at PDBe.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe graph database integrates annotations provided by PDBe-KB partners and is implemented in Neo4J. In this graph each PDB entry is represented as a tree, with the root being the PDB entry, connected to chains and entities, which are then connected to residues. Each of the PDB residues (\u0026gt;150 million) are linked to available annotations (e.g. is the residue part of a catalytic site?, or is it on a macromolecular interaction interface?) and are also directly connected to their corresponding UniProt residues. Storing PDBe-KB data as a graph offers great benefits in particular by allowing straightforward transfer of annotations between PDB entries which map to the same UniProt accession, as well as to highly identical UniProt accession.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ERead the database schema\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/pdbe-kb\/schema\u0022\u003Ehere\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mining-pdbe-and-pdbe-kb-using-graph-database","keywords":["Proteins (proteins)","Structures (structures)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_1317"],"audience":"\u003Cp\u003EThis workshop is aimed at bioinformaticians with experience of analysing data from the PDB, either by processing archive files or via API access. We encourage applications from individuals with specific questions relating to PDB data that are difficult to solve using existing data queries. Programming experience is required, with a preference for those familiar with Python, although \u0026nbsp;this is not an absolute requirement.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAn example use case might involve research into a specific drug molecule, where protein structure is relevant to drug specificity. The graph database would allow the analysis of all common interaction sites in PDB at the residue level, with the potential to expand this search across ligands containing similar fragments. Additional searches could analyse the protein-protein interaction sites between different isoforms of the same protein, and cross-reference them to sequence conservation data and predicted functional annotations.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EResearchers should submit a 200-word abstract when they apply that describes their work and potential queries related to PDB data. This should include details on how PDB data has been accessed previously and the types of questions trying to be answered.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"10","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Exploring human genetic variation","start_date":"2020-02-11 00:00:00","endDate":"2020-02-12 00:00:00","description":"\u003Cp\u003EDo you want to understand more about genetic variation? Are you aware of the resources available for finding, viewing and exploring variant data? Are you trying to link variant data to phenotypes?\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis two-day workshop will demonstrate resources and bioinformatics tools available at EMBL-EBI and the Sanger Institute that will aid understanding of human genetic variation.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/exploring-human-genetic-variation","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Rebecca Nicholl","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/operation_3197","edam:http:\/\/edamontology.org\/operation_0331"],"audience":"\u003Cp\u003ENo prior experience of bioinformatics is required, but an interest in finding out more about genetic variation resources and an undergraduate level understanding of biology would be of benefit. Experience with command line usage would be very beneficial.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis workshop will focus specifically on human genetic variation.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisite\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EWe encourage the audience\u0026nbsp;to go through our\u0026nbsp;online course on human genetic variation prior to attending the workshop -\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/online\/course\/human-genetic-variation-i-introduction-2019\u0022\u003Ewww.ebi.ac.uk\/training\/online\/course\/human-genetic-variation-i-introduction-2019\u003C\/a\u003E\u0026nbsp;.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI workshop in UC Davis: Transcriptomics data and resources","start_date":"2020-01-24 00:00:00","endDate":"2020-01-24 00:00:00","description":"\u003Cp\u003EThis is a one-day workshop to provide an overview of data management and ontology principles in addition to hands-on experience with functional genomics resources at the EBI which cover data submission, archive and visualisation. These resources are: Annotare, ArrayExpress and the transcriptomics knowledgebases Expression Atlases (bulk and single-cell).\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/offsite\/module\/arrayexpress-public-database-functional-genomics\u0022\u003EArrayExpress: public database for functional genomics\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/offsite\/module\/expression-atlas-gene-expression-across-species-and-biological-conditions\u0022\u003EExpression Atlas: Gene expression across species and biological conditions\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-uc-davis-transcriptomics-data-and-resources","keywords":["ArrayExpress Archive of Functional Genomics Data (5488)","Expression Atlas (5511)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"University of California, Davis","url":"","email":""},"contact":{"@type":"Person","name":"Nancy George, Monica Britton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University of California, Davis","address":{"@type":"PostalAddress","streetAddress":"Shields Library","addressCountry":"US","addressRegion":"Davis","postalCode":"95616"}},"topic":["edam:http:\/\/edamontology.org\/topic_0203","edam:http:\/\/edamontology.org\/topic_0085"],"audience":"\u003Cp\u003EThis workshop is aimed at wet-lab scientists and bioinformaticians. Participants should have degree-level understanding of molecular biology\/genetics and be proficient at using web browsers.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"By invitation","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop in Stanford University: Transcriptomics data and resources","start_date":"2020-01-21 00:00:00","endDate":"2020-01-21 00:00:00","description":"\u003Cp\u003EThis is a one-day workshop to provide an overview of data management and ontology principles in addition to hands-on experience with functional genomics resources at the EBI which cover data submission, archive and visualisation. These resources are: Annotare, ArrayExpress and the transcriptomics knowledgebases Expression Atlases (bulk and single-cell).\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/offsite\/module\/arrayexpress-public-database-functional-genomics\u0022\u003EArrayExpress: public database for functional genomics\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/offsite\/module\/expression-atlas-gene-expression-across-species-and-biological-conditions\u0022\u003EExpression Atlas: Gene expression across species and biological conditions\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-stanford-university-transcriptomics-data-and-resources","keywords":["ArrayExpress Archive of Functional Genomics Data (5488)","Expression Atlas (5511)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"Stanford University","url":"","email":""},"contact":{"@type":"Person","name":"Michael Newman, Nancy George","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Stanford University","address":{"@type":"PostalAddress","streetAddress":"Li and Ma Science Library, 376 Lomita Drive","addressCountry":"US","addressRegion":"Stanford","postalCode":"94305"}},"topic":["edam:http:\/\/edamontology.org\/topic_0203","edam:http:\/\/edamontology.org\/topic_0085"],"audience":"\u003Cp\u003EThis workshop is aimed at wet-lab scientists and bioinformaticians. Participants should have degree-level understanding of molecular biology\/genetics and be proficient at using web browsers.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"By invitation","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introduction to RNA-seq and functional interpretation","start_date":"2020-01-21 00:00:00","endDate":"2020-01-24 00:00:00","description":"\u003Cp\u003EThis course will provide an introduction to the technology, data analysis, tools and resources used in RNA sequencing and transcriptomics. The content is intended to provide a broad overview of the subject area, and to introduce participants to simple data analysis using \u0026nbsp;the command line and APIs. It will also highlight key resources, approaches and methodologies to begin the biological interpretation and analysis of transcriptomics data. Topics will be delivered using a mixture of lectures, practical sessions and open discussions. Practical work during the course will use small, example data-sets - there will be no opportunity to \u0026nbsp;analyse personal data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-rna-seq-and-functional-interpretation-0","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3170"],"audience":"\u003Cp\u003EThis course is aimed at life science researchers wanting to learn more about processing RNA-Seq data and later downstream analysis. It will help those wanting a basic introduction to handling RNA-Seq data, guiding them through several common approaches that can be applied to their own datasets. It features taught and practical sessions that cover how to interpret gene expression data and learn more about the\u0026nbsp;biological significance of certain results.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will require a basic knowledge of the Unix command line, the Ubuntu 18 operating system and the R statistical packages. We recommend these free tutorials:\u2028\u2028\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u2028\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u2028\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u2028\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials: \u2028\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003ERegardless of your current knowledge we encourage successful participants to use these, and other materials, to prepare for attending the course and future work in this area.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop in UC San Diego: Transcriptomics data and resources","start_date":"2020-01-17 00:00:00","endDate":"2020-01-17 00:00:00","description":"\u003Cp\u003EThis is a one-day workshop to provide an overview of data management and ontology principles in addition to hands-on experience with functional genomics resources at the EBI which cover data submission, archive and visualisation. These resources are: Annotare, ArrayExpress and the transcriptomics knowledgebases Expression Atlases (bulk and single-cell).\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/offsite\/module\/arrayexpress-public-database-functional-genomics\u0022\u003EArrayExpress: public database for functional genomics\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/offsite\/module\/expression-atlas-gene-expression-across-species-and-biological-conditions\u0022\u003EExpression Atlas: Gene expression across species and biological conditions\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-uc-san-diego-transcriptomics-data-and-resources","keywords":["ArrayExpress Archive of Functional Genomics Data (5488)","Expression Atlas (5511)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"University of California, San Diego","url":"","email":""},"contact":{"@type":"Person","name":"Jason Kreisberg, Nancy George","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University of California, San Diego","address":{"@type":"PostalAddress","streetAddress":"Medical Education and Telemedicine Building, San Diego","addressCountry":"US","addressRegion":"San Diego","postalCode":"92161"}},"topic":["edam:http:\/\/edamontology.org\/topic_0203","edam:http:\/\/edamontology.org\/topic_0085"],"audience":"\u003Cp\u003EThis workshop is aimed at wet-lab scientists and bioinformaticians. Participants should have degree-level understanding of molecular biology\/genetics and be proficient at using web browsers.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"By invitation","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Workshop: Introduction to Metagenomics","start_date":"2019-12-2 00:00:00","endDate":"2019-12-6 00:00:00","description":"\u003Cp\u003EIn this course participants will learn the basics of metagenomics, covering experimental design and workflows, moving through to microbiome analysis via metabarcoding and shotgun metagenomics. The course theme will be the use of metagenomics oriented to biodiversity.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe course will be delivered by experienced and dedicated world-renowned experts, including EMBL-EBI trainers, and will involve presentations, demonstrations and practical exercises to give participants hands-on experience.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-introduction-metagenomics","hostInstitution":{"@type":"Organization","name":"Faculty of Natural Sciences - University of Buenos Aires (FCEN-UBA)","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte, Maria Bernardi","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Faculty of Natural Sciences - University of Buenos Aires (FCEN-UBA)","address":{"@type":"PostalAddress","streetAddress":"Ciudad Universitaria. Nu\u00f1ez - Ciudad Aut\u00f3noma de Buenos Aires - Pabell\u00f3n II","addressCountry":"AR","addressRegion":"Buenos Aires","postalCode":"1428"}},"topic":["edam:http:\/\/edamontology.org\/topic_3174"],"audience":"\u003Cp\u003EThis course is suitable for postgraduate wet-lab researchers and also bioinformaticians at graduate-level upwards within Latin America who are working with and\/or generating their own metagenomics datasets.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites:\u0026nbsp;\u003C\/strong\u003E\u003Cbr \/\u003E\r\nUndergraduate-level knowledge of biology would be advantageous. Participants will also require a basic knowledge of the Unix command line, and the R statistical packages. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u0026nbsp;\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u0026nbsp;\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EPlease note this course will be taught in English, however the trainers are fluent in either Spanish, and can offer language support where feasible.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"25","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"IITM-EBI modelling workshop","start_date":"2019-12-2 00:00:00","endDate":"2019-12-5 00:00:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EComputer models are increasingly used by researchers as well as the pharmaceutical industry to investigate disease initiation, progression and therapy. Modelling of biochemical pathways deregulated in disease condition offers mechanistic insights into the pathology; helps to elucidate mechanisms behind dug action and predict dose required for treatment and thereby greatly facilitates fundamental research and drug discovery. Such modelling requires a background in both molecular biology and mathematics.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThe four days workshop will train researchers from life science and mathematics to communicate and work together to learn to build and analyse computer models using user-friendly open-source software. The workshop will be jointly organised by EBI and Indian Institute of Technology Madras (IITM;\u0026nbsp;\u003Ca href=\u0022https:\/\/www.iitm.ac.in\/\u0022\u003Ehttps:\/\/www.iitm.ac.in\/\u003C\/a\u003E), more specifically, BioModels team from EBI along with\u0026nbsp; Initiative for Biological Systems Engineering (IBSE;\u0026nbsp;\u003Ca href=\u0022https:\/\/ibse.iitm.ac.in\/\u0022\u003Ehttps:\/\/ibse.iitm.ac.in\/\u003C\/a\u003E) and Robert Bosch Centre for Data Sciences and Artificial Intelligence (RBC-DSAI;\u0026nbsp;\u003Ca href=\u0022https:\/\/rbcdsai.iitm.ac.in\/\u0022\u003Ehttps:\/\/rbcdsai.iitm.ac.in\/\u003C\/a\u003E) from IITM. This national-level workshop will be organised locally at IITM. Various modelling approaches and tools will be introduced to the participants. They will explore a few of the disease-specific computer models from a recent publication, freely available in BioModels repository (\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/biomodels\/\u0022\u003E\/\/www.ebi.ac.uk\/biomodels\/\u003C\/a\u003E).\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EOther EBI resources including Reactome, IntAct, OmicsDI, PRIDE, ExpressionAtlas will be introduced to the participants\u0026nbsp; BioModels team will lead the training on kinetic modelling of signalling pathways, curation and annotation of mathematical models as well as standards in modelling (SBML, SED-ML, etc). IITM\/IBSE team will partner in the training on kinetic modelling approaches, and also introduce other paradigms such as constraint-based modelling (e.g. Flux Balance Analysis (FBA)) for the analysis of metabolic pathways.\u0026nbsp;\u0026nbsp;\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EAn essential agenda in the meeting will be group projects where participants from both experimental and theoretical background would work to getter to curate mathematical models and submit them to the BioModels repository. This workshop will allow EBI to partner with IITM to share expertise on kinetic modelling and gain expertise on the curation of non-kinetic models in BioModels repository. Furthermore, this join workshop would be used as an opportunity for long term partnership with IITM to establish training for EBI resources in India, explore the possibility of joint data curation engagement and scientific collaboration.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/iitm-ebi-modelling-workshop","hostInstitution":{"@type":"Organization","name":"Indian Institute of Technology, Madras","url":"","email":""},"contact":{"@type":"Person","name":"IBSE Workshop Team","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Indian Institute of Technology, Madras","address":{"@type":"PostalAddress","streetAddress":"IIT P.O.Chennai","addressCountry":"IN","addressRegion":"Chennai","postalCode":"600036"}},"topic":["edam:http:\/\/edamontology.org\/data_0950","edam:http:\/\/edamontology.org\/operation_2426"],"audience":"\u003Cp\u003EParticipants from both experimental and theoretical backgrounds would benefit from this workshop.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"40","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Single cell RNA-seq analysis: From questions to clusters","start_date":"2019-11-27 00:00:00","endDate":"2019-11-29 00:00:00","description":"\u003Cp\u003EThis course utilises Galaxy pipelines, an online open-access resource that allows even the most computer-phobic bench scientists to analyse their biological data. Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to cell cluster comparisons using data extracted from the Single Cell Expression Atlas. In addition to running a basic pipeline, participants will explore the variety of options within the Galaxy resource and individually analyse a given dataset. The results will be compared across the cohort to assess reproducibility and demonstrate the effect of analytical choice on research output. Finally, participants will learn about data submission, resources, and standards within the single cell field. Please note that although participants will not be able to use their own data during the course practicals, there will be ample time to discuss their research and ideas with both\u0026nbsp;course participants and\u0026nbsp;trainers.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/single-cell-rna-seq-analysis-questions-clusters","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3170"],"audience":"\u003Cp\u003EThis course is aimed at researchers who are generating, planning on generating, or working with single cell RNA sequencing data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will be using a Galaxy resource in-depth. Participants may also be asked to do brief coding in R.\u0026nbsp;Please ensure that you complete the free tutorials\u0026nbsp;before you attend the course:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EIntroduction to Galaxy:\u0026nbsp;\u003Ca href=\u0022https:\/\/galaxyproject.org\/tutorials\/g101\/\u0022\u003Ehttps:\/\/galaxyproject.org\/tutorials\/g101\/\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\r\n\t\u003Cp\u003EBasic R concept tutorials: \u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/p\u003E\r\n\t\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EThere are other tutorials here, although they are not required:\u0026nbsp;\u003Ca href=\u0022https:\/\/galaxyproject.org\/learn\/\u0022\u003Ehttps:\/\/galaxyproject.org\/learn\/\u003C\/a\u003E\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"3D-BioInfo community annual meeting","start_date":"2019-11-21 00:00:00","endDate":"2019-11-22 00:00:00","description":"\u003Cp\u003EELIXIR Communities enable the participation of communities of practice in different areas of the life sciences in the activities of ELIXIR, which underpin the evolution of a data, tools, interoperability, compute and training infrastructure for European life science informatics (\u003Ca href=\u0022https:\/\/www.elixir-europe.org\/use-cases\u0022\u003Ehttps:\/\/www.elixir-europe.org\/use-cases\u003C\/a\u003E).\u003C\/p\u003E\r\n\r\n\u003Cp\u003EStructural bioinformatics has a broad impact across the life sciences and provides tools to archive, visualise, analyse, annotate, and predict the structure of biological macromolecules. Structural bioinformatics is traditionally very strong in Europe offering many software tools, methodologies, and databases, as well as community-wide prediction challenges.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIts applications cover research activities from structural biology to drug discovery and personalised medicine that are all well represented within the national ELIXIR nodes.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe 3D-BioInfo Community was approved by ELIXIR in May 2019. This meeting will be the first official meeting of the community to plan major activities and to identify research groups wishing to contribute to these activities.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/3d-bioinfo-community-annual-meeting","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Charlotte Pearton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_1317"],"audience":"\u003Cp\u003EThis workshop is aimed at members and collaborators of the 3D-BioInfo Community.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics \u0026 functional genomics in zebrafish","start_date":"2019-11-11 00:00:00","endDate":"2019-11-14 00:00:00","description":"\u003Cp\u003EZebrafish are widely used to study development, toxicity and disease, and functional genomics is used throughout the field to identify new pathways and mechanisms and for comparison to other model systems and humans. In this hands-on course, participants will learn how to design functional genomics experiments, manage and analyse RNA-seq datasets from zebrafish, and compare results\u0026nbsp;to other species. The aim of the course is to equip researchers with\u0026nbsp;tools to carry out functional analysis and data visualisation of RNA-seq data that has already been mapped to the genome and been analysed for differential gene expression. The course will be relevant to researchers working on a wide range of topics and will use real datasets from our lab for hands-on analysis.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-functional-genomics-zebrafish","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0085"],"audience":"\u003Cp\u003EThis course is aimed at researchers currently working with zebrafish and generating genomic and functional data.\u0026nbsp;Graduate students, postdoctoral fellows, research scientists and faculty are encouraged to apply. \u0026nbsp;Little to no experience with RNA-seq analysis is required, however, applicants who have already generated an RNA-seq dataset from zebrafish samples relevant to their project will gain the most benefit from this course. \u0026nbsp;Some experience with R is beneficial.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA workshop: Advanced RNAseq and network analysis in genomics","start_date":"2019-11-6 00:00:00","endDate":"2019-11-9 00:00:00","description":"\u003Cp\u003EThis course will provide training on RNAseq data production and interpretation. The course starts with a brief introduction to RNA-seq and discusses quality control issues. Next, we will present the alignment step, quantification of expression and differential expression analysis. We will dedicate some time to analysing and constructing networks from expression data and using the Gene Ontology for gene set enrichment test. Finally, we will cover some aspects of Meta-metrics in networks (high-dimensional data).\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-advanced-rnaseq-and-network-analysis-genomics","hostInstitution":{"@type":"Organization","name":"Instituto de Biolog\u00eda Agr\u00edcola de Mendoza \/ Institute of Agricultural biology (IBAM)","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Instituto de Biolog\u00eda Agr\u00edcola de Mendoza \/ Institute of Agricultural biology (IBAM)","address":{"@type":"PostalAddress","streetAddress":"Almirante Brown 500, Chacras de Coria","addressCountry":"AR","addressRegion":"Mendoza","postalCode":"M5528AHB"}},"topic":["edam:http:\/\/edamontology.org\/topic_3170","edam:http:\/\/edamontology.org\/topic_0602","edam:http:\/\/edamontology.org\/topic_2259"],"audience":"\u003Cp\u003EThis course is aimed at researchers from Masters-level upwards within Latin America who are working with and\/or generating their own plant genomic and transcriptomic datasets.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites:\u003C\/strong\u003E\u003Cbr \/\u003E\r\nSome basic computational or previous bioinformatics experience is required for this workshop, particularly using the UNIX operating system (basic command line skills) and R.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EYou may find the resources below useful:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u0026nbsp;\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u0026nbsp;\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EImportant:\u0026nbsp;\u003C\/strong\u003EAll participants must bring a laptop for the course. We will use a virtual machine (VM) provided by instructors for the course practical sessions. All laptops must be of 64-bit architecture with any Operating System and have at least 60 GB free space.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPlease also note\u003C\/strong\u003E: this course will be taught in Spanish, however the trainers are fluent in English and can offer language support where feasible.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Workshop: Resources and tools for target identification and drug discovery","start_date":"2019-11-6 00:00:00","endDate":"2019-11-8 00:00:00","description":"\u003Cp\u003EIn this course, participants will learn the necessary theoretical background and basic tools of molecular target identification in pathogens and building of compound libraries for virtual screening. We also will introduce general concepts of molecular docking simulations.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-resources-and-tools-target-identification-and-drug-discovery","keywords":["Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"IHEM - Instituto de Histolog\u00eda y Embriolog\u00eda - CCT CONICET Mendoza","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte, Maria Bernardi","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"IHEM - Instituto de Histolog\u00eda y Embriolog\u00eda - CCT CONICET Mendoza","address":{"@type":"PostalAddress","streetAddress":"Universidad Nacional de Cuyo, Faculty of Medical Sciences CONICET","addressCountry":"AR","addressRegion":"Mendoza","postalCode":"5500"}},"topic":["edam:http:\/\/edamontology.org\/topic_3336","edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/operation_0477"],"audience":"\u003Cp\u003EThis course is for biological researchers who want to learn more about the application of structural information in their work and how to use some of the key bioinformatics resources that are available.\u003Cbr \/\u003E\r\n\u0026nbsp;\u003Cbr \/\u003E\r\n\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003Cbr \/\u003E\r\nNo previous experience in the field of structural bioinformatics is required, however a basic knowledge of protein structure would be of benefit.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants should be familiar with basic Linux operations -\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\/\u0022\u003Ehttp:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\/\u003C\/a\u003E\u0026nbsp;- and have some experience of bioinformatics tools and databases.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EImportant: We strongly recommend participants bring their own laptop with Linux OS for the course.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease also note: this course will be taught in Spanish, however the trainers are fluent in English and can offer language support where feasible.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\n\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"26","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Ensembl REST API workshop","start_date":"2019-10-16 00:00:00","endDate":"2019-10-16 00:00:00","description":"\u003Cp\u003EThe Ensembl project provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. Our sister project Ensembl Genomes covers bacteria, plants, fungi, protists and (invertebrate) metazoa.\u0026nbsp;This workshop is aimed at researchers and developers interested in exploring the data beyond the websites. The workshop covers how to use the Ensembl REST APIs, including understanding the major endpoints and how to write Python\/R\/Perl scripts to call them.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ensembl-rest-api-workshop","keywords":["Ensembl (5504)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Astrid Gall","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/operation_0362","edam:http:\/\/edamontology.org\/operation_3209"],"audience":"\u003Cp\u003EBioinformaticians and wet-lab biologists who can program in Perl, Python or R. The\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/events\/2019\/ensembl-browser-workshop-ebi-october-2019\u0022\u003EEnsembl browser workshop\u003C\/a\u003E\u0026nbsp;is a pre-requisite for this course.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"15","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Ensembl browser workshop","start_date":"2019-10-15 00:00:00","endDate":"2019-10-15 00:00:00","description":"\u003Cp\u003EThe Ensembl project at\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ensembl.org\/\u0022\u003Ewww.ensembl.org\u003C\/a\u003E\u0026nbsp;provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This 1-day workshop offers participants the possibility of gaining hands-on experience in the use of the Ensembl genome browser but also provides them with the necessary background information. Our sister project at\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ensemblgenomes.org\/\u0022\u003Ewww.ensemblgenomes.org\u003C\/a\u003E\u0026nbsp;can also be covered if participants are working with bacteria, plants, fungi, protists or (invertebrate) metazoa.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThe workshop is primarily targeted at wetlab researchers, and we customise the course for species of interest and to include total beginners to our browser up through frequent users.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ensembl-browser-workshop","keywords":["Ensembl (5504)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Astrid Gall","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/operation_3208"],"audience":"\u003Cp\u003Ewet-lab researchers and bioinformaticians\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Workshop: Chemoinformatics in Drug Discovery","start_date":"2019-10-15 00:00:00","endDate":"2019-10-18 00:00:00","description":"\u003Cp\u003EThe aim of this workshop is to introduce researchers to the field of Chemoinformatics, especially in the areas of Structure-Based Drug Design (SBDD) and Ligand-Based Drug Design (LBDD). Trainees will cover the use of protein, ligand and drug databases, protein modelling, molecular docking and virtual screening for drug discovery applications. Managing and analysing virtual chemical libraries will also be covered, including the application of machine learning algorithms in drug discovery.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThe workshop will be instructed by trainers from the University of Antioquia in Colombia, from CINVESTAV Unit for Advanced Genomics (LANGEBIO) in Mexico, as well as local expert researchers from the School of Chemistry at the National Autonomous University of Mexico (UNAM).\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-chemoinformatics-drug-discovery","hostInstitution":{"@type":"Organization","name":"LANGEBIO, Cinvestav","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"LANGEBIO, Cinvestav","address":{"@type":"PostalAddress","streetAddress":"Libramiento Norte Carretera Leon Km 9.6","addressCountry":"MX","addressRegion":"Irapuato","postalCode":"36821"}},"topic":["edam:http:\/\/edamontology.org\/topic_3336","edam:http:\/\/edamontology.org\/topic_2258"],"audience":"\u003Cp\u003EThis workshop is suitable for researchers working in Latin American countries. Early career researchers, including graduate students, postdocs and professors working, or planning to start working in Chemoinformatics, are warmly encouraged to apply.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThis workshop will be located in a room with computers however we recommend participants bring their own laptops.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites:\u0026nbsp;\u003C\/strong\u003E\u003Cbr \/\u003E\r\nUndergraduate-level knowledge of chemical and protein structures are required. Familiarity with basic chemoinformatics concepts and notions of programming (R, Python and\/or UNIX) are recommended.\u0026nbsp;\u003Cstrong\u003EPlease note this course will be taught in English, however, the trainers are fluent in Spanish and can offer language support where needed.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"20","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop: Bioinformatics Resources for Chemical and Molecular Biology","start_date":"2019-10-14 00:00:00","endDate":"2019-10-15 00:00:00","description":"\u003Cp\u003EThis workshop will explore bioinformatics data resources related to the fields of biological and chemical physiology. Participants will be introduced to several databases and tool sets available through the EMBL-European Bioinformatics Institute website that can be used to identify useful scientific information and understanding of physiological processes. During the two days participants will learn about these resources through short lectures, work through practical examples and use cases of relevant databases and have time to discuss how best to make use of various tools in their own research.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-bioinformatics-resources-chemical-and-molecular-biology","hostInstitution":{"@type":"Organization","name":"Max Planck Institute of Molecular Physiology","url":"","email":""},"contact":{"@type":"Person","name":"Lucia Sironi","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Max Planck Institute of Molecular Physiology","address":{"@type":"PostalAddress","streetAddress":"Otto-Hahn-Stra\u00dfe 11","addressCountry":"DE","addressRegion":"Dortmund","postalCode":"44227"}},"topic":["edam:http:\/\/edamontology.org\/topic_3369","edam:http:\/\/edamontology.org\/topic_3047","edam:http:\/\/edamontology.org\/topic_0091"],"audience":"\u003Cp\u003EThis workshop is aimed at researchers working in molecular physiology with intertests in biology, chemistry and physics. It will be useful for scientists wanting to learn more about biomolecular data resources and how bioinformatics tools can be used to learn more about the function and interactions of proteins of interest.\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"By invitation","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Train the Trainer Workshop in Lima, Peru","start_date":"2019-10-14 00:00:00","endDate":"2019-10-15 00:00:00","description":"\u003Cp\u003EThis course will provide new trainers with knowledge, skills, guidance and tips for developing and delivering training. Participants will explore a range of methods to enable and encourage learning, examine the requirements for a successful course and acquire appropriate feedback.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe workshop will:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003Eprovide guidance on general training techniques and appropriate use of methods based on learner needs, including some general \u0027DO\u0027s\u0027 and \u0027DO NOTs\u0027 for successful training\u003C\/li\u003E\r\n\t\u003Cli\u003Eprovide a framework for successful curriculum design and further development, to enable trainers to build a course appropriate to their learners\u0027 needs\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-train-trainer-workshop-lima-peru","keywords":["Training (Training)"],"hostInstitution":{"@type":"Organization","name":"Universidad de San Mart\u00edn de Porres (USMP)","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Universidad de San Mart\u00edn de Porres (USMP)","address":{"@type":"PostalAddress","streetAddress":"LIM","addressCountry":"PE","addressRegion":"Santa Anita","postalCode":"15011"}},"audience":"\u003Cp\u003EThis is a two-day interactive workshop which will be delivered in English. Applications are open for researchers based in Peru only.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESelection criteria:\u003Cbr \/\u003E\r\nThere are a number of criteria upon which selection of participants for this workshop will be made. Candidates should be able to demonstrate:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EThey are at postdoctoral level OR have several years of research experience\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are working in a Latin American institution and are likely to remain in the institution for the next\u0026nbsp;year or more\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are actively involved in a research project and actively using bioinformatics tools \/ methods\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have a strong interest in training and have been involved in some training prior to joining the course\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have identified a need \/ gap where training could be provided, and have thought about potential training they would like to deliver.\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EThe ideal candidate will have 3+ years of research experience which includes a bioinformatics component, and a strong interest in developing or delivering bioinformatics training. You do NOT have to be a bioinformatician to apply.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"12","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Exploring biological sequences","start_date":"2019-10-8 00:00:00","endDate":"2019-10-10 00:00:00","description":"\u003Cp\u003EThis workshop will introduce basic bioinformatics approaches that are used to find, analyse and understand nucleotide or protein sequences. It will explore how to conduct searches across biological databases using both metadata and sequence data approaches. The course will explain how sequence searching techniques work, and how to use them effectively to find relevant results. Practical exercises will develop skills in searching for, accessing and aligning sequences; through the use of sample datasets participants will learn how to discover more about the biological context of nucleotide and protein sequences.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe key areas covered by the workshop will include:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003ESequence data resources at EMBL-EBI\u003C\/li\u003E\r\n\t\u003Cli\u003ETools for sequence searching and alignments\u003C\/li\u003E\r\n\t\u003Cli\u003EUsing sequences to investigate families, function and structure\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EIf you would like to see details of similar course from previous years, please take a look at our\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/handson\u0022\u003Ecourse listings\u003C\/a\u003E, using the filter boxes to refine your search by year and subject.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/exploring-biological-sequences","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/data_0867","edam:http:\/\/edamontology.org\/topic_0080","edam:http:\/\/edamontology.org\/data_0857"],"audience":"\u003Cp\u003EThe course is aimed at researchers interested in core bioinformatics techniques, sequence searching and alignment. No prior experience of bioinformatics is required, but familiarity with biological databases and web tools would help. An undergraduate level understanding of molecular biology would be of benefit to those attending the workshop.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop: Mathematics of life workshop: \u201cModelling molecular mechanisms: from basic science to drug discovery\u201d","start_date":"2019-10-2 00:00:00","endDate":"2019-10-2 00:00:00","description":"\u003Cp\u003EThis workshop is open to postdocs in Cambridge, including candidates from University and affiliated institutions\u003C\/p\u003E\r\n\r\n\u003Cp\u003EComputer models are increasingly used by researchers as well as pharmaceutical industry to investigate molecular mechanisms disease initiation, progression and therapy. Systems modelling of biochemical pathways deregulated in disease condition offers mechanistic insights into the pathology; helps to elucidate\u0026nbsp;mechanisms behind dug action and predict dose required for treatment and thereby greatly facilitates fundamental research and drug discovery. Such modelling requires background in both molecular biology and mathematics. This workshop will train postdocs from life science and mathematics to communicate and work together to learn to build and analyse computational models using user-friendly open source software. Participant will explore selected computational models from a recent publication, freely available in BioModels repository (\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/www.ebi.ac.uk\/biomodels\/\u0022\u003Ewww.ebi.ac.uk\/biomodels\/\u003C\/a\u003E).\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe one-day workshop includes scientific talks from 3 distinguished speakers who will showcase how modelling is useful in fundamental research as well as pharmaceutical industry, a tutorial session on modelling of normal and disease pathways using simulation software, COPASI, and an extended afternoon hands-on training workshop \/ group project. Prior knowledge on systems biology modelling not essential.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course is free to attend and funded by the Office of Postdoctoral Affairs, University of Cambridge.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-mathematics-life-workshop-modelling-molecular-mechanisms-basic-science-drug","hostInstitution":{"@type":"Organization","name":"","url":"","email":""},"contact":{"@type":"Person","name":"Rahuman Sheriff","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"","address":{"@type":"PostalAddress","streetAddress":"Sanders Hall, Postdoc Centre @ Eddington - 105 Eddington Place","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB3 1AS"}},"topic":["edam:http:\/\/edamontology.org\/data_0950"],"audience":"\u003Cp\u003EThe workshop is open to postdocs in Cambridge, including candidates from University and affiliated institutions\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"20","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"UNU-BIOLAC and CABANA: Latin American Workshop in Structural Bioinformatics of Proteins","start_date":"2019-09-23 00:00:00","endDate":"2019-09-27 00:00:00","description":"\u003Cp\u003EThis workshop will provide training on well-established resources to analyze protein structures using computational tools. The topics will involve the use of bioinformatics tools and databases, as well as background information on simulations using protein structures. The workshop will be instructed by trainers from the Protein Data Bank in Europe (PDBe), from CINVESTAV Unit for Advanced Genomics (LANGEBIO) in Mexico, as well as local expert researchers from the Max Planck Tandem Group of Biophysics of Tropical Diseases in Colombia working on protein simulations.\u0026nbsp;\u003Ca href=\u0022https:\/\/www.who.int\/topics\/sustainable-development-goals\/targets\/en\/\u0022\u003ESome of the examples used during the sessions will fall under the UN\u0027s sustainable development goal of communicable diseases prevention and treatment\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/unu-biolac-and-cabana-latin-american-workshop-structural-bioinformatics-proteins","keywords":["Structures (structures)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"University EAFIT","url":"","email":""},"contact":{"@type":"Person","name":"Rodrigo Ochoa, Piraveen Gopalasingam","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University EAFIT","address":{"@type":"PostalAddress","streetAddress":"Carrera 49, n\u00famero 7 sur 50","addressCountry":"CO","addressRegion":"Medellin","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_1317"],"audience":"\u003Cp\u003EThis workshop is suitable for academics of Latin American and Caribbean countries. Early career researchers, including graduate students, postdocs and professors working, or planning to start working in Structural Bioinformatics, are warmly encouraged to apply. Knowledge about molecular biology is required, as well as familiarity with basic bioinformatics concepts and undergraduate-level knowledge of protein structures. We expect to have around 20-25 participants from Colombia and other Latin American and Caribbean countries.\u0026nbsp;\u003Cbr \/\u003E\r\n\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPlease note this workshop will be delivered in English, however some of our trainers are fluent Spanish speakers and can offer support where needed.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"25","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Next generation sequencing bioinformatics","start_date":"2019-09-23 00:00:00","endDate":"2019-09-26 00:00:00","description":"\u003Cp\u003EThis course will provide an introduction to the technology, analysis workflows, tools and resources for next generation sequencing data analysis. The content will provide insights into how biological knowledge can be derived from genomics experiments and explain different approaches to analysing such data. The main focus of the course will look at the assembly, re-sequencing, and variant calling undertaken during the analysis of higher-eukaryotes, with a particular emphasis on human genetic research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPractical sessions will allow participants to process training datasets and apply appropriate statistical methods in their analyses. There will be no opportunity to work with your own data during the course.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/next-generation-sequencing-bioinformatics","keywords":["DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Rebecca Nicholl","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3168","edam:http:\/\/edamontology.org\/topic_0622"],"audience":"\u003Cp\u003EThis course is aimed at PhD students and post-doctoral researchers who are using high-throughput sequencing technologies and bioinformatics methods in their research. The content is most applicable for those working with eukaryotic genomes, human genetics and in rare disease research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will require a basic knowledge of the Unix command line, the Ubuntu 16 operating system and the R statistical packages. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\r\n\t\u003Cul\u003E\r\n\t\t\u003Cli\u003E\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003C\/ul\u003E\r\n\t\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPlease note:\u003C\/strong\u003E\u0026nbsp;participants without basic knowledge of these resources will have difficulty in completing the practical sessions.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Structural bioinformatics","start_date":"2019-09-16 00:00:00","endDate":"2019-09-20 00:00:00","description":"\u003Cp\u003EStructural biology, determining the three-dimensional shapes of biomacromolecules and their complexes, can tell us a lot about how these molecules function and the roles they play within a cell. Bioinformatics data derived from structure determination experiments enables life-science researchers to address a wide variety of questions. For example, it aids the understanding of how mutations in a gene might alter a protein\u2019s shape, disrupt a catalytic site, or alter the binding affinity of a pharmaceutical compound.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course explores bioinformatics data resources and tools for the interpretation and exploitation of biomacromolecular structures. It will focus on how best to analyse available structural data to gain useful information given specific research contexts. The course content will investigate the impact of genetic variation on structure, predicting protein structure and function, and exploring interactions with other macromolecules as well as with low-MW compounds. Participants will also have an opportunity to explore protein docking using HADDOCK.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/structural-bioinformatics","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_1317"],"audience":"\u003Cp\u003EThis course is for biological researchers who want to learn more about the application of structural information in their work and how to use some of the key bioinformatics resources that are available. No previous experience in the field of structural bioinformatics is required, however a basic knowledge of protein structure would be of benefit. Participants should be familiar with basic Linux operations -\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\/\u0022\u003Ehttp:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\/\u003C\/a\u003E\u0026nbsp;- and have some experience of bioinformatics tools and databases.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Analysing non-coding RNA with RNAcentral and Rfam","start_date":"2019-09-11 00:00:00","endDate":"2019-09-12 00:00:00","description":"\u003Cp\u003EThis workshop, organised in conjunction with the\u0026nbsp;\u003Ca href=\u0022https:\/\/coursesandconferences.wellcomegenomecampus.org\/our-events\/rna-informatics-2019\/\u0022\u003ERNA Informatics conference\u003C\/a\u003E, provides an overview of RNAcentral and Rfam, two databases for non-coding RNA analysis.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ENon-coding RNAs (ncRNAs) are RNA molecules that are not translated into proteins and are found in every living organism. Many ncRNAs are responsible for important biological functions. For example, rRNA is a key component of the ribosome, and microRNAs regulate gene expression. Researchers from different fields of biology may need to find what is known about specific ncRNA or identify ncRNA in their data, but may not have the required expertise.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/analysing-non-coding-rna-rnacentral-and-rfam","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Rebecca Nicholl","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0659"],"audience":"\u003Cp\u003EThe workshop is aimed at a general audience of biologists and bioinformaticians working with non-coding RNA who are interested in using RNAcentral and Rfam, or for users who would like to bring their projects and discuss them with the RNAcentral and Rfam teams. A basic familiarity with web browsing and an undergraduate level knowledge of molecular biology is recommended for this course. Familiarity with Unix\/Linux command line is desirable for part of the course. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/resources\/free-courses\/introduction-to-linux\/\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/resources\/free-courses\/introduction...\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Finding evidence in research publications","start_date":"2019-09-10 00:00:00","endDate":"2019-09-11 00:00:00","description":"\u003Cp\u003EThis workshop introduces tools and approaches used to discover biologically relevant data in the research literature.\u0026nbsp;Participants will be introduced to the basics of programmatic analysis of scientific literature and explore the principles of dictionary-based text-mining, explained using relevant case studies. The workshop has a strong focus on practical exercises and group project work to give participants hands-on experience, tackling biologically relevant problems based on what they have learnt in this workshop.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EDo you want to identify publicly available datasets cited in research literature to use them in your future analyses? Do you want to develop basic skills to programmatically access and analyse scientific literature? Do you want to learn about the basics of text analytics to make the most of literature review?\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPublished research contains a wealth of new data and evidence. Automating literature review and text analysis can help extract valuable knowledge from millions of research publications. Modern tools for literature analysis can help you identify potential drug targets, predict host-pathogen interactions, or infer growth regulators for crops, based on published findings.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/finding-evidence-research-publications","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3068"],"audience":"\u003Cp\u003EThis\u0026nbsp;workshop is aimed at life science researchers, who are interested in extracting data and evidence from research literature. It will help those\u0026nbsp;who want to identify cited datasets for reuse, further analyses, background research, or as supporting data for own hypotheses. The workshop would also be of interest to those\u0026nbsp;who are applying or planning to apply literature analysis\/text-mining in their own research projects.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will benefit from an undergraduate level knowledge of biology. Participants should ideally have some bioinformatics experience and\/or basic understanding of programmatic access. Please note that this workshop requires no prior knowledge of text analytics or computer programming skills.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ERegardless of your current knowledge, we encourage participants to explore this short series of recorded webinars on an\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/online\/course\/embl-ebi-programmatically-take-rest-manual-searches\/introduction-programmatic-access\u0022\u003Eintroduction to programmatic access\u003C\/a\u003E.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Symposium: Bioinformatics and Biodiversity - Unlocking new tools for biodiversity research","start_date":"2019-09-2 00:00:00","endDate":"2019-09-4 00:00:00","description":"\u003Cp\u003EThis symposium will cover a broad range of topics in DNA barcoding and metabarcoding bioinformatics for biodiversity studies. Biodiversity experts from across Latin America and beyond will provide an introduction to the field, including general approaches and technologies for studying biodiversity in different contexts. Sample collection and processing, selecting appropriate markers and various analysis methods will be covered, as will regulatory issues in Latin America.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003E2 day symposium in Bragan\u00e7a, Par\u00e1 State\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThere will be a second symposium titled, \u201c\u003Cstrong\u003EIV North Northeast Symposium on Bioinformatics\u003C\/strong\u003E\u201d in Bragan\u00e7a - PA between 4-5th September. The topic will also be biodiversity. It will be a good opportunity to connect with a wider bioinformatics community and to also see a beautiful spot near the coast. For further information please follow this\u0026nbsp;\u003Ca href=\u0022https:\/\/doity.com.br\/ivsnnb\u0022\u003Elink\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-symposium-bioinformatics-and-biodiversity-unlocking-new-tools-biodiversity-research","hostInstitution":{"@type":"Organization","name":"Vale Institute of Technology (ITV)","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Vale Institute of Technology (ITV)","address":{"@type":"PostalAddress","streetAddress":"R. Boaventura da Silva, , 955 - Nazar\u00e9","addressCountry":"BR","addressRegion":"Bel\u00e9m","postalCode":"66055-090"}},"topic":["edam:http:\/\/edamontology.org\/topic_3050"],"audience":"\u003Cp\u003EThis symposium is aimed at a broad audience. We will welcome researchers from postgraduate level upwards who conduct biodiversity studies and are interested in initiating or boosting molecular and computational approaches to their work. We also welcome participation from those in industry, government, funding agencies or other stakeholders interested in establishing projects or programs on the use of molecular tools for biodiversity assessment, monitoring or species identification.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThe symposium will present a higher level view of the topic. Specific molecular or computational skills are not necessary. However, a general understanding of molecular approaches will be very useful, as will an understanding of current practices for biodiversity assessment.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease note this symposium will be in English, however, the speakers may be fluent in either Spanish\/Portuguese, and can offer language support where feasible.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003Cbr \/\u003E\r\n\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"100","sponsor":[null,null,null,null,null,null,null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Train the Trainer in Bel\u00e9m, Brazil","start_date":"2019-08-29 00:00:00","endDate":"2019-08-30 00:00:00","description":"\u003Cp\u003EThis course is currently under development and full details about the course are not yet available.\u0026nbsp; Once the programme is confirmed we will post it here along with details on how to apply and registration costs.\u0026nbsp; If you would like to be informed when applications open for this course then please click on the \u201cRegister your interest\u201d button above.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;If you would like to see details of similar course from previous years, please take a look at our\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/handson\u0022\u003Ecourse listings\u003C\/a\u003E, using the filter boxes to refine your search by year and subject.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-train-trainer-belem-brazil","keywords":["Training (Training)"],"hostInstitution":{"@type":"Organization","name":"Vale Institute of Technology (ITV)","url":"","email":""},"contact":{"@type":"Person","name":"Piraveen Gopalasingam","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Vale Institute of Technology (ITV)","address":{"@type":"PostalAddress","streetAddress":"R. Boaventura da Silva, , 955 - Nazar\u00e9","addressCountry":"BR","addressRegion":"Bel\u00e9m","postalCode":"66055-090"}},"audience":"\u003Cp\u003EThis is a two-day interactive workshop which will be delivered in English. Applications are open for researchers based in ITV only.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESelection criteria:\u003Cbr \/\u003E\r\nThere are a number of criteria upon which selection of participants for this workshop will be made. Candidates should be able to demonstrate:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EThey are at postdoctoral level OR have several years of research experience\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are working in a Latin American institution and are likely to remain in the institution for the next year or more\u003C\/li\u003E\r\n\t\u003Cli\u003EThey are actively involved in a research project and actively using bioinformatics tools \/ methods\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have a strong interest in training and have been involved in some training prior to joining the course\u003C\/li\u003E\r\n\t\u003Cli\u003EThey have identified a need \/ gap where training could be provided, and have thought about potential training they would like to deliver.\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EThe ideal candidate will have 3+ years of research experience which includes a bioinformatics component, and a strong interest in developing or delivering bioinformatics training. You do NOT have to be a bioinformatician to apply.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"By invitation","maximumAttendeeCapacity":"12","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Workshop: Genotyping by Sequencing Applied to Plant Breeding","start_date":"2019-08-6 00:00:00","endDate":"2019-08-9 00:00:00","description":"\u003Cp\u003EThis workshop will provide training around the experimental design and multiple applications of Genotyping by Sequencing (GBS) in plants. In addition, detailed computational analysis of GBS data and resources will be explored. Genomic analysis tools for GBS, such as Tassel, iPyrad, STACKS, as well as publicly available resources for plant data process and application will we implemented during the workshop.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nThe analysis of genomic variation is an essential part of plant genetics and crop improvement programs. DNA polymorphisms can be directly related to phenotype differences, be genetically linked to its causative factor, or indicate relationships between individuals in populations. Over the last years, the use of genotyping has enabled the characterization and mapping of genes and metabolic pathways in plants as well as the study of species diversity and evolution, marker-assisted selection (MAS), germplasm characterization and seed purity. Genotyping by sequencing (GBS) is a high throughput method to identify and genotype, at the same time, molecular markers as part of breeding activities, genetic mapping, and population genomics. Another advantage is that this method can be applied to organisms without reference genome and imputation of SNPs can be done as part of haplotype blocks. It was first published in 2011 and since then multiple crops have been improved including maize, potato, and rice.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-genotyping-sequencing-applied-plant-breeding","hostInstitution":{"@type":"Organization","name":"University of Costa Rica (UCR)","url":"","email":""},"contact":{"@type":"Person","name":"Laura Brenes Guill\u00e9n, Andr\u00e9s Gatica-Arias","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University of Costa Rica (UCR)","address":{"@type":"PostalAddress","streetAddress":"Ciudad universitaria Rodrigo Facio Brenes","addressCountry":"CR","addressRegion":"San Jose","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3810","edam:http:\/\/edamontology.org\/operation_3196"],"audience":"\u003Cp\u003EThis course is aimed at wet-lab researchers at\u0026nbsp;within Latin America undertaking plant breeding and population genetics interested in applying next-generation sequencing to screen individuals.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease note this course will be taught in English, however the trainers are fluent in either Spanish or Portuguese, and can offer language support where feasible.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EKnowledge in UNIX and NGS technologies is required. Therefore, these free resources should be studied beforehand:\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EYou may also find this\u0026nbsp;\u003Ca href=\u0022https:\/\/www.youtube.com\/watch?v=NGqKJ0TnL9o\u0026amp;index=2\u0026amp;list=PLCLuDSotcmhL2zP1_mUIhfw8vAWX-v1yT\u0026amp;t=0s\u0022\u003Evideo overview of GBS\u003C\/a\u003E\u0026nbsp;useful.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Proteomics bioinformatics","start_date":"2019-07-21 00:00:00","endDate":"2019-07-26 00:00:00","description":"\u003Cp\u003EThis course, run jointly with\u0026nbsp;\u003Ca href=\u0022https:\/\/coursesandconferences.wellcomegenomecampus.org\/home.wt\u0022\u003EWellcome Genome Campus Advanced Courses and Scientific Conferences\u003C\/a\u003E,\u0026nbsp;provides hands-on training in the basics of mass spectrometry and proteomics bioinformatics, search engines and post-processing software, quantitative approaches, MS data repositories, the use of public databases for protein analysis, annotation of subsequent protein lists and incorporation of information from molecular interaction and pathway databases.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/proteomics-bioinformatics","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Advanced courses","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0121"],"audience":"\u003Cp\u003EThe course is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields. The practical elements of the course will take raw data from a proteomics experiment and analyse it. Participants will be able to go from MS spectra, to identifying peptides and finally to lists of protein identifiers that can be analysed further using a wide range of resources. The final aim is to provide attendees with the practical bioinformatics knowledge they need to go back to the lab and process their own data once it has been generated.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics for immunologists","start_date":"2019-07-15 00:00:00","endDate":"2019-07-19 00:00:00","description":"\u003Cp\u003EThe course will provide participants with an overview of best-practice methods in applying bioinformatics approaches and enable them to become confident users of their own and public domain data. The resources introduced during the course will cover a variety of data types, from genomic and proteomic data; to computational models, biological pathways and reaction information. Participants will gain experience of the analysis pipelines for NGS experiments relevant to immunology, and will be led through an exploration of this data to identify information of interest. Additionally participants will be introduced to how data from a number of sources can be integrated to provide a wider view of their research.\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-immunologists","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Scientific conferences","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0804","edam:http:\/\/edamontology.org\/topic_3948"],"audience":"\u003Cp\u003EThe course is aimed at individuals working in immunology research who have minimal experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their skills and knowledge further. Participants will require a basic knowledge of the Unix command line, and the R statistical package. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EIntroduction to the Unix environment \u2013\u0026nbsp;\u003Ca href=\u0022https:\/\/urldefense.proofpoint.com\/v2\/url?u=http-3A__www.ee.surrey.ac.uk_Teaching_Unix_\u0026amp;d=DwMD-g\u0026amp;c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo\u0026amp;r=lZ8TilWsz7wZYhD_7QEJ_zy-chCJ7j3dw2nORYkMj8q4BYQqooqgm95RjdJF-edo\u0026amp;m=z7vKEHIJR1OnzRfifZTqvrC9oUkVbHH7q2XiBqUjeQ0\u0026amp;s=PjyeXFvDGkGNl-KySnEbfB6swREJI9LsguLN5G-I9gk\u0026amp;e=\u0022\u003Ehttp:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\/\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concepts \u2013\u0026nbsp;\u003Ca href=\u0022https:\/\/urldefense.proofpoint.com\/v2\/url?u=http-3A__www.r-2Dtutor.com_r-2Dintroduction\u0026amp;d=DwMD-g\u0026amp;c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo\u0026amp;r=lZ8TilWsz7wZYhD_7QEJ_zy-chCJ7j3dw2nORYkMj8q4BYQqooqgm95RjdJF-edo\u0026amp;m=z7vKEHIJR1OnzRfifZTqvrC9oUkVbHH7q2XiBqUjeQ0\u0026amp;s=hYkR-4ZAYR_83WsAMbGFxdvJH0hyHB_WUleOlrOErNo\u0026amp;e=\u0022\u003Ehttp:\/\/www.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Systems biology: From large datasets to biological insight","start_date":"2019-07-8 00:00:00","endDate":"2019-07-10 00:00:00","description":"\u003Cp\u003EFor some time, advances in computer science and high performance computing have led to ground-breaking developments in systems biology model inference. However, only now has there been sufficient large-scale data available to parameterise these models and use them usefully. Similarly, machine learning approaches have recently started having a significant impact in our analysis of large omics datasets and extraction of useful biological knowledge.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETherefore this course, run in collaboration with the Wellcome Genome Campus Advanced Courses and Scientific Conferences Team, will provide timely advanced-level training in using large-scale multi-omics data and machine learning to infer biological models.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/systems-biology-large-datasets-biological-insight-0","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Yvonne Thornton ","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_2259"],"audience":"\u003Cp\u003EApplicants should be researchers who are using large multi-omics datasets to infer systems biology models. This is an advanced-level course, and so we will select applicants who already have some experience (ideally 1-2 years) of working with systems biology modelling or related large-scale multi-omics data analysis. Additionally, applicants will be expected to have a working knowledge of using Linux commands, and experience of using a programming language (e.g. Python or Perl).\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Managing single cell transcriptomics data","start_date":"2019-07-3 00:00:00","endDate":"2019-07-5 00:00:00","description":"\u003Cp\u003EThis course aims to provide researchers generating and working with single-cell RNA sequencing or image-based transcriptomics data with the tools and knowledge for generating high-quality metadata alongside their data and analyses. Participants will learn what it means to make their data FAIR (Findable, Accessible, Interoperable, and Reusable) and what tools and standards are available to help them with good data management and FAIRification. Finally, participants will learn about the Human Cell Atlas project and how to ensure their data reaches the wider research community.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/managing-single-cell-transcriptomics-data","keywords":["DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3170"],"audience":"\u003Cp\u003EThis course is aimed at researchers who are generating, planning on generating, or working with single cell RNA sequencing or image-based transcriptomics data.\u0026nbsp;\u003Cem\u003E\u003Cstrong\u003EThis course will not cover any aspects of data analysis\u003C\/strong\u003E\u003C\/em\u003E, therefore no prior computational knowledge is required.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"BioExcel Summer School on Biomolecular Simulations 2019","start_date":"2019-06-30 00:00:00","endDate":"2019-07-5 00:00:00","description":"\u003Cp\u003EThe summer school will include lectures and hands-on sessions on the following topics:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EMolecular Dynamics simulations\u003C\/li\u003E\r\n\t\u003Cli\u003EBiomolecular Docking\u003C\/li\u003E\r\n\t\u003Cli\u003EQM\/MM\u003C\/li\u003E\r\n\t\u003Cli\u003EFree energy calculations\u003C\/li\u003E\r\n\t\u003Cli\u003EAdvanced sampling methods (metadynamics)\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EDuring the hands-on computer practicals you will work on a use case integrating the various topics above making use, among others, of the BioExcel flagship software (GROMACS, HADDOCK, PMX, CP2K).\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioexcel-summer-school-biomolecular-simulations-2019","hostInstitution":{"@type":"Organization","name":null,"url":"","email":""},"contact":{"@type":"Person","name":"Michelle Mendonca","url":"","email":"[email protected]"},"location":{"@type":"Place","name":null,"address":{"@type":"PostalAddress","streetAddress":null,"addressCountry":null,"addressRegion":null,"postalCode":null}},"topic":["edam:http:\/\/edamontology.org\/topic_3892"],"audience":"\u003Cp\u003EThe summer school is intended for researchers (primarily PhD and post-docs) using or planning to use biomolecular modeling and simulation in their everyday research.\u0026nbsp;Familiarity with Linux and some basic knowledge of molecular modelling software is a requirement.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA Workshop: Genomic Analysis of Crop Biodiversity using R","start_date":"2019-06-25 00:00:00","endDate":"2019-06-28 00:00:00","description":"\u003Cp\u003EThis course will provide training on using R in genomics applications for crop biodiversity. The first day will cover the basics of biodiversity and R, before analyzing various genomes to assess biodiversity. This will include hierarchical clustering, correlating genomic data with geographic and phenotypic information and investigating gene-phenotype relationships and microsatellites. This course will use genomic data of wheat, maize and chilli pepper as training datasets throughout the week.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course will be jointly taught by Octavio Martinez de la Vega (LANGEBIO, Cinvestav) and Manuel Humberto Reyes-Valdes (UAAAN).\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-genomic-analysis-crop-biodiversity-using-r","hostInstitution":{"@type":"Organization","name":"LANGEBIO, Cinvestav","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"LANGEBIO, Cinvestav","address":{"@type":"PostalAddress","streetAddress":"Libramiento Norte Carretera Leon Km 9.6","addressCountry":"MX","addressRegion":"Irapuato","postalCode":"36821"}},"topic":["edam:http:\/\/edamontology.org\/topic_3050","edam:http:\/\/edamontology.org\/format_3999","edam:http:\/\/edamontology.org\/topic_0622"],"audience":"\u003Cp\u003EThis course is aimed at researchers from postgraduate level upwards interested in using R to analyse genomics data for crop biodiversity studies.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\n\u003Cstrong\u003EPlease note this course will be taught in English, however the trainers are fluent in Spanish, and can offer language support where feasible.\u003Cbr \/\u003E\r\nA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003Cbr \/\u003E\r\nAn undergraduate level degree in plant biology or a related discipline would be an advantage.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nYou will need to know basic commands in R in order to get the most from this course, though a review of basic concepts and commands in R will be covered on the first day.\u0026nbsp;You can find a good introduction to R here:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ehttp:\/\/www.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EYou will also need to bring a laptop with R installed and working knowledge of how to navigate your working directory effectively using R commands.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETo download R please visit:\u0026nbsp;\u003Ca href=\u0022https:\/\/www.r-project.org\/\u0022\u003Ehttps:\/\/www.r-project.org\/\u003C\/a\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETo download RStudio please visit:\u0026nbsp;\u003Ca href=\u0022https:\/\/www.rstudio.com\/products\/rstudio\/download\/\u0022\u003Ehttps:\/\/www.rstudio.com\/products\/rstudio\/download\/\u003C\/a\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"25","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Summer school in bioinformatics","start_date":"2019-06-24 00:00:00","endDate":"2019-06-28 00:00:00","description":"\u003Cp\u003EThis course provides an introduction to the use of bioinformatics in biological research, giving participants guidance for using bioinformatics in their work whilst also providing hands-on training in tools and resources appropriate to their research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will initially be introduced to bioinformatics theory and practice, including best practices for undertaking bioinformatics analysis, data management and reproducibility. To enable specific exploration of resources in their particular field of interest, participants will be divided into focused groups to work on a small project set by EMBL-EBI resource and research staff, ending in a presentation from each group on the final day of the course.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe course includes training and mentoring provided by experts from EMBL-EBI and external institutes.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EGroup projects\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EA major element of this course is a group project, where participants will be placed in small groups to work together on a challenge set by trainers from EMBL-EBI data resource and research teams. \u0026nbsp;This allows people to explore the bioinformatics tools and resources available in their area of interest and to apply these to a set problem, providing them with hands-on experience of relevance to their own research. The group work will culminate in a presentation session involving all participants on the final day of the course, giving an opportunity for wider discussion on the benefits and challenges of working with biological data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EGroups are mentored by the trainers who set the initial challenge, but active participation from all group members is expected. \u0026nbsp;Groups are pre-organised before the course, and all group members will be sent some short \u201chomework\u201d in preparation for their project work prior to the start of the course.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe basic outline of the projects on offer this year are given below. \u0026nbsp;In your application you should indicate your first and second choice of project, based on your judgement of which would benefit your research most. \u0026nbsp;Not all projects may be offered, final decisions on which projects will be run during the course will be made based on the number of applicants per project.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis year\u2019s projects are as follows:\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003ENetworks and pathways\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe project will make use of gene expression data (RNA-seq) to build protein-protein interaction networks which can be used to explore functional relationships between the (potentially) expressed protein products. You will use Cytoscape to visualise protein networks, identify key regulators of biological pathways and explore biological function through network analysis, integration and co-visualisation of additional data, and ontology\/functional enrichment analysis - helping to build a better view of the wider biological context.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EMetabolic network engineering using a systems model based approach\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EYou will work with a model example of metabolic pathways set, coming from the BioModels database, and you will learn how to carry out computational analyses to find common patterns (i.e. set of reactions) in the network. These might include computing feasible pathways through the network, and minimal set of reactions to knock out specific metabolic functions. Visualisation of results will be achieved with an interactive graphical tool available as a web service.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EModelling cell signalling pathways\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003ECurating models of biological processes is an effective training in computational systems biology, where the curators gain an integrative knowledge on biological systems, modelling and bioinformatics. You will learn to encode models of signalling pathways from a recent publication using COPASI and reproduce the simulation results. Furthermore you will learn to annotate models and learn to re-use pre-existing models from open repositories such as BioModels.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EProteomics (data analysis and functional annotation)\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this project, you will obtain real-life proteomics data from clinical tumour samples. Your task will be to process the raw data, analyse the results, and eventually interpret them in a wider context using the Open Targets Platform.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EAn introduction to deep learning through functional annotation of proteins\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAutomatically annotating protein sequences with functional information is vital in a world where sequences are produced so fast that humans can\u0027t keep up. In this project you will explore how deep learning can be used to enrich sequences automatically.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003ESingle cell characterization of cell types and cell development\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis project will make use of single cell RNA Sequencing data (scRNA-Seq) to show how to: 1) quality control the sequencing data; 2) understand the variances of the data; 3) cluster the cell types; 4) understand the cell development; 5) find differential expression genes that determine the cell types or cell development. You will use data from the Human Cell Atlas and Tabula Muris to understand human and mouse cell types respectively.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EFinding and extracting meaningful structural data from PDBe\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis project will introduce you to the wealth of data available at PDBe and how this can be extracted to analyse macromolecular structures. You will firstly explore the search and entry pages at PDBe to identify the type of data available for analysis. Using this knowledge, you will then use and adapt template scripts in order to access this data programmatically and analyse a subset of your results. This project should give you the foundation of knowledge about how to access data through the PDBe API, and how you can analyse subsets of PDB data related to your field of expertise.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EExploring variation data across human populations\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003ENatural variation is required to generate the broad range of traits and phenotypes that exist between single individuals and between different populations. In this project you will explore the results of SNP-calling using web-based resources such as Ensembl Variant Effect Predictor. You will predict the functional consequences of variants between separate human populations and identify the variant(s) within your samples that have been associated with several interesting phenotypes.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/summer-school-bioinformatics","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Scientific conferences","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/operation_2421"],"audience":"\u003Cp\u003EThis course is aimed at individuals working across biological sciences who have little or no experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their skills and knowledge further. No previous knowledge of programming \/ coding is required for this course.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Cancer genomics","start_date":"2019-06-17 00:00:00","endDate":"2019-06-20 00:00:00","description":"\u003Cp\u003EThis course will focus on the analysis of data from genomic studies of Cancer. \u0026nbsp;Lectures will give an insight into the bioinformatic concepts required to analyze such data, whilst practical sessions will enable the participants to apply statistical methods to the analysis of cancer genomics data under the guidance of the lecturers and teaching assistants.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cancer-genomics","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_2640","edam:http:\/\/edamontology.org\/topic_0622"],"audience":"\u003Cp\u003EThis course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies in cancer research and wish to familiarise themselves with bioinformatics tools and data analysis methodologies specific to cancer data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EFamiliarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R\/Bioconductor (basic understanding of the R syntax and ability to manipulate R objects) and the Unix\/Linux operating system.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Ensembl browser course","start_date":"2019-06-11 00:00:00","endDate":"2019-06-11 00:00:00","description":"\u003Cp\u003EThe Ensembl project at\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ensembl.org\/\u0022\u003Ewww.ensembl.org\u003C\/a\u003E\u0026nbsp;provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This 1-day workshop offers participants the possibility of gaining hands-on experience in the use of the Ensembl genome browser but also provides them with the necessary background information. Our sister project at\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ensemblgenomes.org\/\u0022\u003Ewww.ensemblgenomes.org\u003C\/a\u003E\u0026nbsp;can also be covered if participants are working with bacteria, plants, fungi, protists or (invertebrate) metazoa.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThe workshop is primarily targeted at wetlab researchers, and we customise the course for species of interest and to include total beginners to our browser up through frequent users.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ensembl-browser-course","keywords":["Ensembl (5504)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Benjamin Moore","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0622","edam:http:\/\/edamontology.org\/topic_0091"],"audience":"\u003Cp\u003EWet-lab researchers and bioinformaticians\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Metagenomics bioinformatics","start_date":"2019-06-10 00:00:00","endDate":"2019-06-13 00:00:00","description":"\u003Cp\u003EThis course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data, including marker gene, whole gene shotgun (WGS) and assembly-based approaches. Delegates will gain hands-on experience using a range of data resources and tools, interspersed with lectures. Additionally, there will be the opportunity to discuss the challenges facing researchers in the field.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/metagenomics-bioinformatics-0","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Meredith Willmott","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3174","edam:http:\/\/edamontology.org\/topic_0080","edam:http:\/\/edamontology.org\/topic_1775"],"audience":"\u003Cp\u003EThis course is aimed at life scientists who are working in the field of metagenomics, in the early stages of their data analysis, and who may already have some prior experience in using bioinformatics in their research.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPrerequisites\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESome practical sessions in the course require a basic understanding of the Unix command line and the R statistics package. If you are not already familiar with these then please ensure that you complete these free tutorials before you attend the course:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics for principal investigators","start_date":"2019-06-4 00:00:00","endDate":"2019-06-6 00:00:00","description":"\u003Cp\u003EThe aim of this course is to provide principal investigators with an introduction to the challenges of working with biological data as a research leader; to provide guidance on strategies for managing data and the importance of data sharing; how to encourage bioinformatics development in your team and \/ or work with collaborators and what resources are available across the life sciences.\u0026nbsp; This course will not provide a platform for teaching hands-on bioinformatics analysis.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course is organised in parallel with\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/events\/2019\/managing-bioinformatics-core-facility\u0022\u003EManaging a Bioinformatics Core Facility\u003C\/a\u003E\u0026nbsp;to maximise opportunities for networking. Shared sessions are\u0026nbsp;\u003Cstrong\u003Ehighlighted in bold \u003C\/strong\u003Ein\u0026nbsp;the course programme.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-principal-investigators","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Charlotte Pearton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/operation_2421","edam:http:\/\/edamontology.org\/topic_3307","edam:http:\/\/edamontology.org\/topic_3071"],"audience":"\u003Cp\u003EThis course is aimed at both new and established investigators who lead a research team which currently uses bioinformatics, or where bioinformatics will be a component in future research. No prior knowledge of bioinformatics, or experience of analysis is required for this course.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"15","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Managing a bioinformatics core facility","start_date":"2019-06-4 00:00:00","endDate":"2019-06-6 00:00:00","description":"\u003Cp\u003E\u0026nbsp;This knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI\u2019s service teams, from each other, and from potential users of their services. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients \u2013 experimental researchers \u2013 become more exposed to the power of data-driven biology.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe workshops will allow participants to share experiences, discuss challenges and solutions that they face, and plan ways to cope with the ever changing demands raised by the molecular life science field. It will include sessions to learn from data providers at EMBL-EBI, hear how others have tackled common problems, and work together to design core services.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/managing-bioinformatics-core-facility-0","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Charlotte Pearton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/operation_3760"],"audience":"\u003Cp\u003EThis workshop is aimed at new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets. This course will not provide a platform for teaching hands-on bioinformatics analysis.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"15","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Protein function prediction with machine learning and interactive analytics","start_date":"2019-05-29 00:00:00","endDate":"2019-05-30 00:00:00","description":"\u003Cp\u003EDo you want to learn how to develop models to predict protein function? Do you want analyse and exploit the growing volume of biological data? Do you want to develop basic skills in novel machine learning approaches and big data technologies?\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis workshop explores how to conduct functional annotation of proteins through machine learning (ML) approaches. Participants will gain an insight into existing public protein data resources; and how novel approaches can be used to analyse and explore these data to gain new understanding of protein function. The workshop will introduce Apache Spark and Apache Zeppelin; technologies for fast data processing and integrating analytics respectively.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/protein-function-prediction-machine-learning-and-interactive-analytics","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3474","edam:http:\/\/edamontology.org\/topic_0736","edam:http:\/\/edamontology.org\/topic_1775","edam:http:\/\/edamontology.org\/topic_0623"],"audience":"\u003Cp\u003EThis workshop is aimed at researchers and bioinformaticians from across industry and academia who are looking to leverage machine learning approaches in protein function prediction. It will guide participants through the use of big data to build analytical workflows on publically-available biological data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will require prior experience in the use of the command line interface and confidence in a\u0026nbsp;programming language to fully benefit from the workshop. Please contact us if you have any questions about the course\u0027s suitability before you apply.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop: Network Analysis with Cytoscape and PSICQUIC","start_date":"2019-05-22 00:00:00","endDate":"2019-05-22 00:00:00","description":"\u003Cp\u003EThis module provides an introduction to the theory and concepts of network analysis. Attendees will learn how to construct protein-protein interaction networks and subsequently use these to analyse large-scale datasets generated these to by techniques such as RNA-Seq or mass-spec proteomics. The course will focus on giving attendees hands-on experience in the use of Cytoscape and selected network analysis apps.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-network-analysis-cytoscape-and-psicquic","hostInstitution":{"@type":"Organization","name":"University of Cambridge","url":"","email":""},"contact":{"@type":"Person","name":"Charlotte Pearton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University of Cambridge","address":{"@type":"PostalAddress","streetAddress":"Downing Site","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB2 3AR"}},"topic":["edam:http:\/\/edamontology.org\/topic_0602"],"audience":"\u003Cp\u003EThis workshop is aimed at researchers interested in proteins, network analysis, protein-protein interactions and related areas. Those who are graduate students, postdocs and staff members from the University of Cambridge, affiliated institutions and other external Institutions or individuals, are invited to apply. Basic knowledge of interaction data resources and techniques is recommended.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EPlease be aware that these courses are only free for registered University of Cambridge students. All other participants will be charged a registration fee in some form. Registration fees and further details regarding the charging policy are available\u0026nbsp;\u003Ca href=\u0022http:\/\/www.training.cam.ac.uk\/bioinformatics\/info\/charging\u0022\u003Ehere\u003C\/a\u003E.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EFurther details regarding eligibility criteria are available\u0026nbsp;\u003Ca href=\u0022http:\/\/www.training.cam.ac.uk\/bioinformatics\/info\/eligibility\u0022\u003Ehere\u003C\/a\u003E.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":null,"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA workshop: Introduction to R and Bioconductor for genomic analyses","start_date":"2019-05-21 00:00:00","endDate":"2019-05-24 00:00:00","description":"\u003Cp\u003EBioinformatics is fast becoming an integral component of all biological projects. The deluge of genomic information has also opened up the possibility of asking new questions using only publicly available data and a personal computer. This course will go beyond bioinformatic tools that run on web interfaces. Instead, you will learn to program using R, one of the most popular languages for performing bioinformatic and statistical analyses.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe course will begin by introducing basic R commands and scripts, and move onto the use of R in genomics. Bioconductor will be covered in the second half of the course, with the final day focussing on genome annotation and downloading data using biomaRt.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-introduction-r-and-bioconductor-genomic-analyses","hostInstitution":{"@type":"Organization","name":"LANGEBIO, Cinvestav","url":"","email":""},"contact":{"@type":"Person","name":"Derrin Crawte","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"LANGEBIO, Cinvestav","address":{"@type":"PostalAddress","streetAddress":"Libramiento Norte Carretera Leon Km 9.6","addressCountry":"MX","addressRegion":"Irapuato","postalCode":"36821"}},"topic":["edam:http:\/\/edamontology.org\/format_3999","edam:http:\/\/edamontology.org\/topic_0622","edam:http:\/\/edamontology.org\/operation_3208"],"audience":"\u003Cp\u003EThe course is suitable for graduate students and young researchers with a background in biology who are\u0026nbsp;keen to become proficient bioinformaticians within the fields of genomics and\/or transcriptomics. We will start with the basics, so students with no prior programming knowledge are welcome. We have a number of Linux computers that you can use, and you can bring your own laptops*.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EPlease note this course will be taught in English, however the trainers are fluent in either Spanish or Portuguese, and can offer language support where feasible.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E*If you bring your own laptop (any operating system is fine), you must have installed the following programs: R (at least version 3.5), the latest Rstudio and Bioconductor.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETo download R please visit:\u0026nbsp;\u003Ca href=\u0022https:\/\/www.r-project.org\/\u0022\u003Ehttps:\/\/www.r-project.org\/\u003C\/a\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETo download RStudio please visit:\u0026nbsp;\u003Ca href=\u0022https:\/\/www.rstudio.com\/products\/rstudio\/download\/\u0022\u003Ehttps:\/\/www.rstudio.com\/products\/rstudio\/download\/\u003C\/a\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EBioconductor must be downloaded and installed via R, instructions on how to do this can be found here:\u0026nbsp;\u003Ca href=\u0022https:\/\/www.bioconductor.org\/install\/\u0022\u003Ehttps:\/\/www.bioconductor.org\/install\/\u003C\/a\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"24","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Computational molecular evolution","start_date":"2019-05-13 00:00:00","endDate":"2019-05-24 00:00:00","description":"\u003Cp\u003ERun biennially at the Genome Campus (and jointly with EMBL-EBI) this hands-on computational course aims to provide early-career stage researchers with the theoretical knowledge and practical skills to carry out molecular evolutionary analyses on sequence data. Instructors teaching molecular evolution may also benefit from this course by refreshing their knowledge of cutting-edge analytical methods in the field.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn addition, the course will offer a unique opportunity for direct interaction with some of the world-leading scientists and authors of famous analysis tools in Evolutionary Bioinformatics.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe demand for such training is large and growing, as are the sequence databases and researchers\u2019 awareness of the important insights that can be gained from phylogenetic and molecular evolutionary techniques.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAll details for this event can be found on the\u0026nbsp;\u003Ca href=\u0022https:\/\/coursesandconferences.wellcomegenomecampus.org\/our-events\/computational-molecular-evolution-2019\/\u0022\u003EConnecting Science Courses and Conferences website\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/computational-molecular-evolution","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Yvonne Thornton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/topic_3307","edam:http:\/\/edamontology.org\/topic_3299"],"audience":"\u003Cp\u003EExperience from previous years has led to preference being given to candidates who:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003Eare doctoral candidates in the early to middle stages of their thesis research\u003C\/li\u003E\r\n\t\u003Cli\u003Ealready have some familiarity with phylogenetic methods (i.e. have already used some of the relevant tools)\u003C\/li\u003E\r\n\t\u003Cli\u003Ehave already collected\/assembled a molecular sequence dataset to analyze in their work\u003C\/li\u003E\r\n\t\u003Cli\u003Ehave experience of working in a Unix\/Linux command-line environment\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003EWe will also select a small number of participants that already work in bioinformatics labs, to intensify collaboration between early career stage biologists and bioinformaticians. Applicants from labs with a strong focus on computational molecular evolution methodology need to carefully outline their motivation for attending the course in this context, since they have ready access to expert supervision and are likely to be very skilled already in the topics we teach, or are in the course of becoming very skilled therein.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe course is also suitable for established researchers who would like to refresh their memory of modern statistical methods for phylogenetic analysis of genomic sequence data and to interact with developers of such methods.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Functional insights into biological data through network analysis","start_date":"2019-05-13 00:00:00","endDate":"2019-05-17 00:00:00","description":"\u003Cp\u003EThe omics era of biological research\u0026nbsp;requires more systemic approaches to data analysis and\u0026nbsp;a\u0026nbsp;move away\u0026nbsp;from the single gene\/protein perspective.\u0026nbsp;Network and pathway analysis tools use the information available in protein-protein interaction and pathway databases to enrich biological data and allow us to understand biological entities, not only as individual components, but also as complex, interacting systems.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course will provide life scientists with training on biological network and pathway analysis and protein interaction bioinformatics resources. 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No prior experience of bioinformatics is required, but participants should have an undergraduate level understanding of biology.\u0026nbsp;Those who are graduate students, postdocs and staff members from the University of Cambridge, affiliated institutions and other external Institutions or individuals, are invited to apply.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"43","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop: An Introduction to Sequence Searching","start_date":"2019-04-12 00:00:00","endDate":"2019-04-12 00:00:00","description":"\u003Cp\u003EThis module introduces the area of sequence similarity searching and focuses on how to use tools like BLAST and PSI-Search to find homologous sequences in EMBL-EBI databases, including tips on which tool and database to use, input formats, how to change parameters and how to interpret the results pages.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-introduction-sequence-searching","hostInstitution":{"@type":"Organization","name":"University of Cambridge","url":"","email":""},"contact":{"@type":"Person","name":"Charlotte Pearton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"University of Cambridge","address":{"@type":"PostalAddress","streetAddress":"Downing Site","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB2 3AR"}},"topic":["edam:http:\/\/edamontology.org\/data_0857"],"audience":"\u003Cp\u003EThis workshop is aimed at researchers who need to undertake sequence searching as part of their work. Those who are graduate students, postdocs and staff members from the University of Cambridge, affiliated institutions and other external Institutions or individuals, are invited to apply.\u0026nbsp;No previous bioinformatics experience is required, but an undergraduate level understanding of biology would be an advantage.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":null,"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Exploring Biodiversity through Bioinformatics","start_date":"2019-04-9 00:00:00","endDate":"2019-04-12 00:00:00","description":"\u003Cp\u003EMany Latin American countries are hotspots for biodiversity, most of which have been characterized only to a very limited extent. This course aims to provide knowledge on available approaches, methods and tools to perform studies on biodiversity employing modern high-throughput sequencing approaches. After the course, participants will have learnt how to select the appropriate sequencing approach and experimental setup, how to access, control quality and clean data, and to analyze and interpret results using available bioinformatics tools.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/exploring-biodiversity-through-bioinformatics","hostInstitution":{"@type":"Organization","name":"International Potato Center (CIP)","url":"","email":""},"contact":{"@type":"Person","name":"Jan Kreuze","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"International Potato Center (CIP)","address":{"@type":"PostalAddress","streetAddress":"Avenida La Molina 1895","addressCountry":"PE","addressRegion":"La Molina","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3050"],"audience":"\u003Cp\u003EThis course is aimed at wet-lab researchers at any career stage within Latin America who are working with and\/or generating their own plant genomic and\/or microbial genomic\/transcriptomic datasets.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nBasic computational or previous bioinformatics experience is required for this workshop, and an undergraduate level knowledge of biology would be an advantage.\u003Cbr \/\u003E\r\n\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"By invitation","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"RNA-sequence analysis","start_date":"2019-04-8 00:00:00","endDate":"2019-04-12 00:00:00","description":"\u003Cp\u003EThis course will familiarise participants with advanced data analysis methodologies in the field of transcriptomics and to provide practical training in the latest analytical approaches. Lectures will give insight into how biological knowledge can be generated from RNA-Seq experiments and illustrate different ways of analysing the generated data. Practicals will enable participants to apply statistical methods to the analysis of RNA-Seq data under the guidance of the trainers.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/rna-sequence-analysis","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3308","edam:http:\/\/edamontology.org\/data_0928"],"audience":"\u003Cp\u003EThis course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies and bioinformatics methods in their research. Familiarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R\/Bioconductor.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBO Practical Course: Research to service - Planning and running a bioinformatics core facility","start_date":"2019-04-8 00:00:00","endDate":"2019-04-12 00:00:00","description":"\u003Cp\u003EComputational core facilities play a vital role in enabling molecular life sciences, and the number of such facilities has grown considerably. There are many relatively inexperienced managers of core facilities, who often have to juggle their own research projects with the development and operation of services. This can be exceptionally challenging, not least because scientific impact tends only to be recognised and rewarded for research. This EMBO Practical Course will provide an opportunity for aspiring new managers of core facilities, especially those with one foot in the research camp, to learn from experienced core facilities managers how to build a framework for the future development, resourcing, operation and impact assessment of their core services.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe EMBO Practical Course will not be a \u2018classical\u2019 bioinformatics course, but it will focus on the business development and resource and data management aspects of running a core facility. It will have a high proportion of practical content in which participants solve problems relevant to their own core facility.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embo-practical-course-research-service-planning-and-running-bioinformatics-core-facility","hostInstitution":{"@type":"Organization","name":"Izmir Biomedicine and Genome Center (IBG)","url":"","email":""},"contact":{"@type":"Person","name":"Ezgi Karaca","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Izmir Biomedicine and Genome Center (IBG)","address":{"@type":"PostalAddress","streetAddress":"Dokuz Eylul University Health Campus, Mithatpasa St. 58\/5","addressCountry":"TR","addressRegion":"Balcova","postalCode":"35340"}},"audience":"\u003Cp\u003EThis course is aimed at new managers of core facilities or those looking to embark on developing such a facility within their organisation.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":null,"sponsor":[null,null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop: Bioinformatics tools for exploring protein biology, Iasi, Romania","start_date":"2019-04-4 00:00:00","endDate":"2019-04-5 00:00:00","description":"\u003Cp\u003EThis two-day workshop will introduce participants to bioinformatics approaches for analysis biological data from resources such as UniProt and the PDBe. Day 1 will cover introductory programming in UNIX and python, sequence similarity searching, and how to navigate and use the protein sequence database UniProt. Day 2 will cover methods to access and retrieve data programmatically, the macromolecular structure database Protein Data Bank in Europe, and end with a talk and panel discussion on artificial intelligence\u2019s role in protein structure prediction.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EActivities will include interactive presentations and practical exercises delivered by experienced trainers, which will give trainees hands-on experience.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-bioinformatics-tools-exploring-protein-biology-iasi-romania","hostInstitution":{"@type":"Organization","name":"Alexandru Ioan Cuza University","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Alexandru Ioan Cuza University","address":{"@type":"PostalAddress","streetAddress":"Bulevardul Carol I nr. 11","addressCountry":"RO","addressRegion":"Iasi","postalCode":"700506"}},"topic":["edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003EThis workshop is aimed at postgraduates (Masters and PhD students) as well as young researchers working with protein sequences and structures.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAn undergraduate level understanding of molecular biology and protein structures is necessary. No prior experience of bioinformatics is required.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Livestock genomics","start_date":"2019-04-1 00:00:00","endDate":"2019-04-5 00:00:00","description":"\u003Cp\u003EThis course will introduce participants to methods and approaches for analysing genomic data from common livestock species. It will guide participants through understanding the theory of next generation sequencing methods, and how these are applied in the field of livestock genomics. Over the course participants will learn about resequencing genomes, locating variant data, annotating a genome sequence using transcriptomics data and how to begin ascribing function to genes and genomic regions. The content will also explain how to make use of existing public data, submit and share your discoveries with the community and draw on relevant use cases in the field.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/livestock-genomics","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0622","edam:http:\/\/edamontology.org\/topic_0085","edam:http:\/\/edamontology.org\/format_2031","edam:http:\/\/edamontology.org\/operation_2478"],"audience":"\u003Cp\u003EThis course is aimed at PhD students and postdoctoral researchers needing to learn about methods and approaches for manipulating and analysing livestock genomic data. It will help those wanting to start basic identification of genetic variation, annotating function to genomic data, and using public data to interpret new findings.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will require a basic knowledge of the Unix command line, the Ubuntu 18 operating system and the R statistical packages. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/This%20course%20is%20aimed%20at%20PhD%20students%20and%20postdoctoral%20researchers%20needing%20to%20learn%20about%20methods%20and%20approaches%20for%20manipulating%20and%20analysing%20livestock%20genomic%20data.%20It%20will%20help%20those%20wanting%20to%20start%20basic%20identification%20of%20genetic%20variation%2C%20annotating%20function%20to%20genomic%20data%2C%20and%20using%20public%20data%20to%20interpret%20new%20findings.%20Participants%20will%20require%20a%20basic%20knowledge%20of%20the%20Unix%20command%20line%2C%20the%20Ubuntu%2018%20operating%20system%20and%20the%20R%20statistical%20packages.%20We%20recommend%20these%20free%20tutorials%3A%E2%80%A8%E2%80%A8%20Basic%20introduction%20to%20the%20Unix%20environment%3A%E2%80%A8%20www.ee.surrey.ac.uk\/Teaching\/Unix%20Introduction%20and%20exercises%20for%20Linux%3A%E2%80%A8%20https%3A\/\/training.linuxfoundation.org\/free-linux-training%E2%80%A8%20Basic%20R%20concept%20tutorials%3A%20%E2%80%A8www.r-tutor.com\/r-introduction%20Regardless%20of%20your%20current%20knowledge%20we%20encourage%20successful%20participants%20to%20use%20these%2C%20and%20other%20materials%2C%20to%20prepare%20for%20attending%20the%20course%20and%20future%20work%20in%20this%20area.\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/tsc.ebi.ac.uk\/article\/how-use-training-database\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials: \u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003ERegardless of your current knowledge we encourage successful participants to use these, and other materials, to prepare for attending the course and future work in this area.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introduction to RNA-seq and functional interpretation","start_date":"2019-03-26 00:00:00","endDate":"2019-03-29 00:00:00","description":"\u003Cp\u003EThis course will provide an introduction to the technology, data analysis, tools and resources used in RNA sequencing and transcriptomics. The content is intended to provide a broad overview of the subject area, and to introduce participants to simple data analysis using \u0026nbsp;the command line and APIs. It will also highlight key resources, approaches and methodologies to begin the biological interpretation and analysis of transcriptomics data. Topics will be delivered using a mixture of lectures, practical sessions and open discussions. Practical work during the course will use small, example data-sets - there will be no opportunity to \u0026nbsp;analyse personal data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-rna-seq-and-functional-interpretation","keywords":["DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Johanna Langrish","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0203","edam:http:\/\/edamontology.org\/topic_0085"],"audience":"\u003Cp\u003EThis course is aimed at life science researchers needing to learn more about the basic processing of raw RNA-Seq data and downstream analysis. It will help those wanting to learn how to interpret gene expression data and explore results of biological significance from processed data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EParticipants will require a basic knowledge of the Unix command line, the Ubuntu 18 operating system and the R statistical packages. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Linux:\u0026nbsp;\u003Ca href=\u0022https:\/\/training.linuxfoundation.org\/free-linux-training\u0022\u003Ehttps:\/\/training.linuxfoundation.org\/free-linux-training\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials: \u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003ERegardless of your current knowledge we encourage successful participants to use these, and other materials, to prepare for attending the course and future work in this area.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI Workshop: Interactions and pathways for endocrine biology","start_date":"2019-03-26 00:00:00","endDate":"2019-03-26 00:00:00","description":"\u003Cp\u003EThis course is aimed at giving life scientists and clinicians training on how to explore and use molecular interaction and pathway bioinformatics resources. The workshop opens with an introduction to resources and tools at EMBL-EBI and molecular interaction theory, before focussing on the IntAct and Reactome databases.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EEMBL-EBI workshops employ a blend of short presentations and exercises to give trainees hands-on experience with its databases and tools and are run by experienced trainers.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-interactions-and-pathways-endocrine-biology-0","hostInstitution":{"@type":"Organization","name":"New Orleans Ernest N. Morial Convention Center","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol, Kirsta Suggs, Keely McNamara","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"New Orleans Ernest N. Morial Convention Center","address":{"@type":"PostalAddress","streetAddress":"900 Convention Center Blvd","addressCountry":"US","addressRegion":"New Orleans","postalCode":"70130"}},"topic":["edam:http:\/\/edamontology.org\/topic_0602"],"audience":"\u003Cp\u003EThis course is for researchers and clinicians at any career stage attending ENDO2019 who want to explore and use the EMBL-EBI IntAct and Reactome resources for their research, whether they are looking to build networks prior to omics data analysis, or to better understand the biology of their favourite gene(s) or protein(s).\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cbr \/\u003E\r\nNo knowledge of programming is required, but an undergraduate level knowledge of biology and\/or biochemistry would be an advantage.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Exploring human genetic variation","start_date":"2019-03-19 00:00:00","endDate":"2019-03-20 00:00:00","description":"\u003Cp\u003EDo you want to understand more about genetic variation? Are you aware of the resources available for finding, viewing and exploring variant data? Are you trying to link variant data to phenotypes?\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis two-day workshop will data resources and bioinformatics tools available at EMBL-EBI and the Sanger Institute that will aid understanding of human genetic variation. Each day will focus on a particular topic, with the aim of helping you get more from your data and also to explore publicly-available data that can further support your research.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/exploring-human-genetic-variation-0","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Charlotte Pearton","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0199","edam:http:\/\/edamontology.org\/topic_0091"],"audience":"\u003Cp\u003ENo prior experience of bioinformatics is required, but an interest in finding out more about variation resources and an undergraduate level understanding of biology would be of benefit. This workshop will focus specifically on human variation.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"CABANA workshop: Introduction to next-generation sequencing","start_date":"2019-03-18 00:00:00","endDate":"2019-03-20 00:00:00","description":"\u003Cp\u003EThis course will provide an introduction to the technology, data analysis, tools and resources for next generation sequencing (NGS) data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETopics will be delivered using a mixture of lectures, practical sessions and open discussions. Practical work during the course will use small, example data-sets and there will not be scope to analyse personal data. The course content makes use of data derived mainly from eukaryotic non-model organisms in a biodiversity context.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/cabana-workshop-introduction-next-generation-sequencing","hostInstitution":{"@type":"Organization","name":"LANGEBIO, Cinvestav","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"LANGEBIO, Cinvestav","address":{"@type":"PostalAddress","streetAddress":"Libramiento Norte Carretera Leon Km 9.6","addressCountry":"MX","addressRegion":"Irapuato","postalCode":"36821"}},"topic":["edam:http:\/\/edamontology.org\/topic_3168"],"audience":"\u003Cp\u003EThis course is suitable for postgraduate wet-lab researchers at any career stage within Latin America who are working with and\/or generating their own transcriptomic datasets.\u003Cbr \/\u003E\r\n\u0026nbsp;\u003Cbr \/\u003E\r\nParticipants will require a basic knowledge of the Unix command line and the R statistical package. We recommend these free tutorials:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBasic introduction to the Unix environment:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.ee.surrey.ac.uk\/Teaching\/Unix\u0022\u003Ewww.ee.surrey.ac.uk\/Teaching\/Unix\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction and exercises for Bio-Linux 7:\u0026nbsp;\u003Ca href=\u0022http:\/\/nebc.nerc.ac.uk\/support\/training\/course-notes\/past-notes\/intro-bl7\u0022\u003Ehttp:\/\/nebc.nerc.ac.uk\/support\/training\/course-notes\/past-notes\/intro-bl7\u003C\/a\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003EBasic R concept tutorials:\u0026nbsp;\u003Ca href=\u0022http:\/\/www.r-tutor.com\/r-introduction\u0022\u003Ewww.r-tutor.com\/r-introduction\u003C\/a\u003E\u0026nbsp;\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;Participants without basic knowledge of these resources will have difficulty in completing the practical sessions. We strongly recommend that you make every effort to access these materials and other training available online or within your host institute to best prepare you for the course.\u003Cbr \/\u003E\r\n\u0026nbsp;\u003Cbr \/\u003E\r\n\u003Cstrong\u003EA number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form.\u003C\/strong\u003E\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"25","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Data visualisation for biology: A practical workshop on design, techniques and tools","start_date":"2019-03-11 00:00:00","endDate":"2019-03-15 00:00:00","description":"\u003Cp\u003EAs biological datasets increase in size and complexity, we are moving more and more from an hypothesis-driven research paradigm to a data-driven one. As a result, exploration of that data has become even more crucial than in the past.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nIn this 5-day workshop, we will dive into the topic of biological data visualization and how it can be used to gain insight in and get a \u0022feel\u0022 for a dataset, so that targeted analyses can be defined. We will start by covering theoretical questions like: What is data visualization? How do we perceive images? How can we visualise data in the best possible way? As the workshop continues, it will become more and more hands-on and interactive. In the workshop, we will focus on omics (e.g. genomics, transcriptomics) data rather than e.g. imaging data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/data-visualisation-biology-practical-workshop-design-techniques-and-tools","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Frank O\u2019Donnell","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/operation_0337"],"audience":"\u003Cp\u003EThis course is targeted at biologists who want to explore, and gain further insight, into their own data through the use of visualisation and design approaches.\u0026nbsp;Some prior experience in programming would be beneficial, but pre-reading and exercises will be sent out to all successful applicants prior to the start of the course. Example datasets will be provided which include:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003Egene-gene interaction data\u003C\/li\u003E\r\n\t\u003Cli\u003Egene-disorder links\u003C\/li\u003E\r\n\t\u003Cli\u003Ephylogeny of transcription factors\u003C\/li\u003E\r\n\t\u003Cli\u003EChIP-Seq and RNA-Seq\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","sponsor":[null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics resources for protein biology","start_date":"2019-02-26 00:00:00","endDate":"2019-02-28 00:00:00","description":"\u003Cp\u003EAre you aware of the wide range of protein data resources that can easily be accessed and explored to enhance your research? Do you want to know more about the sequence of your protein and its functions? Wondered whether a structure of your protein exists and how to explore it? Want to know more about the potential complexes and reaction pathways your protein of interest is involved in, giving you a better overview of its biological context?\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis three day course will introduce you to data resources and tools developed by EMBL-EBI that can help you in your protein studies. Each day will focus on a particular protein topic, with the aim of helping you get more from your data and also to explore publically-available data that can further support your research. On the last day you will have the opportunity to either explore the data resources presented in the course further, tackling a biologically relevant problem, or to learn how to access some of the EMBL-EBI resources and tools programmatically.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ECourse topics:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EDay 1: Where can I find protein sequence, classification and comparison information?\u003C\/li\u003E\r\n\t\u003Cli\u003EDay 2: How do I choose a \u201cgood\u201d protein structure and what can I learn from it?\u003C\/li\u003E\r\n\t\u003Cli\u003EDay 3: What interactions, complexes and pathways is my protein involved in?\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-resources-protein-biology-0","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003EThis course is aimed at anyone interested in finding out more about protein biology. No prior experience of bioinformatics is required, but participants should have an undergraduate level understanding of biology.\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003EFor those who wish to attend the session on programmatic access a prior knowledge of coding\/programming would be of benefit. For an introduction to the concept of web services and how you can use them to access the tools and data available at EMBL-EBI please watch our \u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/online\/course\/embl-ebi-programmatically-take-rest-manual-searches\/introduction-programmatic-access\u0022\u003Ewebinar\u003C\/a\u003E.\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"First come, first served","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EMBL-EBI workshop: Resources and tools for genomics, protein interactions and structural applications","start_date":"2019-02-20 00:00:00","endDate":"2019-02-21 00:00:00","description":"\u003Cp\u003EIn this course participants will explore EMBL-EBI resources for genomics, protein interaction and structural biological applications. The sessions focus on browsing, searching and retrieving genomic data, protein interaction information and three-dimensional structures.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EDay 1 will cover the Ensembl genome browser resource, where researchers can explore annotated genomes and features of interest including genes, s, transcripts, and variants. Participants will also be introduced to the Variant Effect Predictor (VEP) tool and BioMart for bulk data download.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EDay 2 will introduce protein-protein interactions and the molecular interactions and complex databases IntAct and Complex Portal, where researchers can browse, visualize and download protein interaction and complex data. The afternoon sessions will focus on the structural biology archive Protein Data Bank in Europe, where participants can browse and visualize molecular structure data, with an emphasis on the recent Cryo-EM database EMDB\/EMPIAR.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe course will be delivered by experienced and dedicated EMBL-EBI trainers, and will involve presentations, demonstrations and practical exercises to give participants hands-on experience.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/embl-ebi-workshop-resources-and-tools-genomics-protein-interactions-and-structural-applications","hostInstitution":{"@type":"Organization","name":"Universit\u00e0 di Pavia","url":"","email":""},"contact":{"@type":"Person","name":"Johanna Langrish","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"Universit\u00e0 di Pavia","address":{"@type":"PostalAddress","streetAddress":"via Ferrata 1","addressCountry":"IT","addressRegion":"Pavia","postalCode":"27100"}},"topic":["edam:http:\/\/edamontology.org\/topic_0622","edam:http:\/\/edamontology.org\/topic_0128","edam:http:\/\/edamontology.org\/topic_1317"],"audience":"\u003Cp\u003EThis course is aimed at researchers at any career stage within the University of Pavia and Institute of Molecular Genetics who are working with and\/or generating their own genomic and biomolecular datasets.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ENo knowledge of programming is required, but an undergraduate level knowledge of Biology \/ molecular biology would be beneficial.\u003C\/p\u003E\r\n","eventType":"Course outside EMBL-EBI","eligibility":"By invitation","maximumAttendeeCapacity":"30","sponsor":[null,null],"contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introduction to multiomics data integration","start_date":"2019-02-12 00:00:00","endDate":"2019-02-15 00:00:00","description":"\u003Cp\u003EWith the increase in the volume of data across the whole spectrum of biology, more researchers are looking to integrate omics data of different types to inform hypotheses and biological questions. This may also include public domain data, which can provide added value to data derived through researcher\u2019s own work and inform experimental design. This introductory course will highlight the challenges that researchers face in integrating multiomics data sets using biological examples. The course will focus on the use of public data resources and open access tools for enabling integrated working, with an emphasis on data visualisation. Please note this course does not cover statistical approaches for data integration.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-multiomics-data-integration","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Frank O\u2019Donnell","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3391","edam:http:\/\/edamontology.org\/topic_3366","edam:http:\/\/edamontology.org\/operation_0337"],"audience":"\u003Cp\u003EThis introductory course is aimed at biologists who are embarking on multiomics projects and computational biologists \/ bioinformaticians who wish to gain a better understanding of the biological challenges when working with integrated datasets. No programming or command line experience is required to attend this course. Please note this course does not cover statistical approaches for data integration.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EFor advanced-level training in using large-scale multiomics data and machine learning to infer biological models you may wish to consider our course on\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/events\/2019\/systems-biology-large-datasets-biological-insight\u0022\u003ESystems Biology: From large datasets to biological insight\u003C\/a\u003E.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introduction to metabolomics analysis","start_date":"2019-02-5 00:00:00","endDate":"2019-02-8 00:00:00","description":"\u003Cp\u003EThis course will provide an introduction to metabolomics data analysis using publicly available software and tools. Participants will become familiar with the current state of experimental design, data standards, analysis and sharing in metabolomics, particularly through using the EMBL-EBI\u2019s MetaboLights repository and PhenoMeNal infrastructure. There will be a practical component, where participants will learn through hands-on tutorials to use some of the tools available for data analysis and data submission. The course will be completed with an interactive session which will build on the weeks learning to discuss how to develop a metabolomics workflow with a clinical case study.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-metabolomics-analysis-0","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Johanna Langrish","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_3172"],"audience":"\u003Cp\u003EThis course is aimed at researchers who are new to the field of metabolomics and wish to learn about the process of developing a metabolomics study. Attendees will gain an understanding of the workflow process and some of the analysis techniques and so should benefit those who are planning to include metabolite profiling in their work, either moving into the field or as an addition to other omics. We will primarily focus on a basic introduction to metabolomics with a worked example using a predesigned LC-MS analysis workflow. The course assumes little prior knowledge of using bioinformatics tools.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"30","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics for discovery","start_date":"2019-01-22 00:00:00","endDate":"2019-01-23 00:00:00","description":"\u003Cp\u003ECreated specifically for scientists working in a discovery environment, this course introduces bioinformatics as a science. The course aims to enable scientists to become more confident users of publically available data resources and analysis tools.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis course was developed by EMBL-European Bioinformatics Institute (EMBL-EBI), with input from representatives of Bayer, GSK, Syngenta and Unilever and features tailored delivery methods and focused case studies.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cstrong\u003ECourse delivery\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe majority of the course will be delivered online, using a dedicated section of EMBL-EBI\u2019s e-learning portal, Train online.\u0026nbsp; An initial face to face workshop at the beginning of the course will give trainees an opportunity to learn basic skills and concepts in bioinformatics, whilst also being provided with more detail on how to best work through the online elements, and network with others who will be studying alongside them.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe majority of the course will be studied at a distance, by working through a series of online workflows.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ECurrently available workflows include:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EBioinformatics principles -\u0026nbsp;The bioinformatics principles workflow introduces Bioinformatics as a science and shows you how easy it is to start using bioinformatics tools and resources without needing a computational background.\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EChemical biology -\u0026nbsp;The chemical biology workflow introduces resources which allow you to determine the \u0022druggability\u0022 of a protein target and to explore potential chemical or small molecular interactions.\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EExploring protein targets -\u0026nbsp;This workflow will help you explore the wealth of information available on proteins and their potential as drug targets.\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003ETranscriptomics -\u0026nbsp;This workflow introduces the field of transcriptomics and discusses the technologies, processes, and challenges involved in running a transcriptomics experiment.\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n\r\n\u003Cp\u003E\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAll trainees must complete the \u0022Bioinformatics principles\u0022 workflow before moving on to workflows of their choice.\u0026nbsp; Each workflow has a short final assessment which must be passed to unlock the next workflow and only one workflow can be studied at one time.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESupport mechanisms will be in place via discussion boards, virtual drop-in sessions and regular webinars throughout the module. The course will conclude with a wrap-up workshop in July 2019.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ETo complete the course trainees must complete at least three workflows and participate in the final workshop.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-discovery","hostInstitution":{"@type":"Organization","name":"European Bioinformatics Institute","url":"","email":""},"contact":{"@type":"Person","name":"Marina Pujol","url":"","email":"[email protected]"},"location":{"@type":"Place","name":"European Bioinformatics Institute","address":{"@type":"PostalAddress","streetAddress":"Hinxton","addressCountry":"GB","addressRegion":"Cambridge","postalCode":"CB10 1SD"}},"topic":["edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/topic_3336","edam:http:\/\/edamontology.org\/topic_3391"],"audience":"\u003Cp\u003EThis course is aimed at bench biologists working in the area of discovery science who want to learn more about bioinformatics tools and resources. No prior knowledge of bioinformatics is required and no experience of programming or the use of Unix \/ Linux is necessary.\u003C\/p\u003E\r\n","eventType":"Course at EMBL-EBI","eligibility":"Open application with selection","maximumAttendeeCapacity":"20","contentHub_type":"Event"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Ethics\/ELSI considerations - From FAIR to fair data sharing","start_date":"2021-04-15 16:00:00","endDate":"2021-04-15 17:00:00","description":"\u003Cp\u003EThe FAIR principles \u2013 standing for Findability, Accessibility, Interoperability, and Reusability \u2013 have become the guiding principles for the wider sharing of research data in the life sciences. While FAIR provides guidance for the management of data as well as tools and workflows, the institutional conditions and organizational challenges associated with data sharing need to be taken into account to ensure responsible and fair data practices. This requires considering the context of legal requirements, for instance the principle of fairness and transparency in GDPR, expectations of research participants\/data subjects, societal aspects and the \u201cethics work\u201d that is an integral part of data flows, as well as fairness, equity and benefit sharing within transnational collaborations, which is of utmost importance. This webinar will, from the perspective of ethical, legal and societal implications (ELSI), discuss this broader context of responsible and fair data sharing associated with FAIR.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe \u201cHow FAIR are you\u201d webinar series and hackathon aim at increasing and facilitating the uptake of FAIR approaches into software, training materials and cohort data, to facilitate responsible and ethical data and resource sharing and implementation of federated applications for data analysis.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ethicselsi-considerations-fair-fair-data-sharing","hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Marta Lloret Llinares","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_2409","edam:http:\/\/edamontology.org\/data_0006","edam:http:\/\/edamontology.org\/topic_3571"],"audience":"\u003Cp\u003EPeople involved in research in the life sciences and interested in fair data sharing.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","sponsor":[null],"contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Submitting your genome wide association study data to the GWAS Catalog","start_date":"2021-03-31 15:30:00","endDate":"2021-03-31 16:30:00","description":"\u003Cp\u003EThe\u0026nbsp;GWAS Catalog is a comprehensive and highly accessed resource for GWAS data,\u0026nbsp;including full\u0026nbsp;summary statistics. We encourage authors to submit their data to\u0026nbsp;us, to make them accessible and\u0026nbsp;reusable by the wider GWAS community. This\u0026nbsp;webinar provides a step-by-step guide to the submission\u0026nbsp;process, including\u0026nbsp;setting up your account, converting your summary statistics to our standard\u0026nbsp;format,\u0026nbsp;providing metadata and receiving accession numbers to cite in\u0026nbsp;publications.\u0026nbsp; \u0026nbsp;\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/submitting-your-genome-wide-association-study-data-gwas-catalog","keywords":["NHGRI-EBI GWAS Catalog (5685)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3517"],"audience":"\u003Cp\u003EThis webinar is for any academic, clinical or industrial researcher who is generating genome wide association data.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Integrating knowledge of proteins and small molecules with UniProtKB","start_date":"2021-03-25 15:30:00","endDate":"2021-03-25 16:30:00","description":"\u003Cp\u003E\u003Cstrong\u003E*Please note this webinar has been moved from 25th February to 25th March*\u003C\/strong\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EA complete understanding of biological systems requires integration of knowledge of the regulation and function of small molecule metabolites \u2013 the metabolome \u2013 with that of genes, transcripts, and proteins (the genome, transcriptome, and metabolome). \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThe UniProt knowledgebase \u003Ca href=\u0022https:\/\/www.uniprot.org\u0022\u003EUniProtKB\u003C\/a\u003E supports biomedical research by providing a comprehensive, high quality and freely accessible resource of protein sequences and functional information. UniProtKB integrates, interprets and standardizes data from a range of sources including the scientific literature, tools for protein sequence analysis, other knowledge resources and databases, and automatic annotation systems, to provide a detailed overview of the available protein knowledge. \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis webinar will provide an introduction into how UniProtKB captures and represents knowledge of small molecule metabolites using the \u003Ca href=\u0022https:\/\/www.rhea-db.org\/\u0022\u003ERhea knowledgebase of biochemical reactions\u003C\/a\u003E, based on the \u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/chebi\/\u0022\u003Echemical ontology ChEBI\u003C\/a\u003E, and how UniProt users can access and exploit that knowledge. \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/integrating-knowledge-proteins-and-small-molecules-uniprotkb","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/topic_0154"],"audience":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis webinar targets life scientists and bioinformaticians who study enzymes and small molecules, particularly those interested in linking or bridging the two domains. No prior knowledge of bioinformatics or cheminformatics is required, but an undergraduate level knowledge of biology\/ biochemistry would be useful.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Mol*: Improved molecular visualisation at PDBe","start_date":"2021-03-24 15:30:00","endDate":"2021-03-24 16:30:00","description":"\u003Cp\u003EThis webinar will focus on the use of the online molecular visualisation tool, Mol* at PDBe. We will show basic usage, observation of electron density maps and EM volumes, interrogation of ligand structures, and the visualisation of sequence annotations. We will also highlight the advantages to using Mol* in comparison to other tools and show the different ways the Mol* viewer is presented and accessed on PDBe\u0027s pages.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mol-improved-molecular-visualisation-pdbe-0","keywords":["Protein Data Bank in Europe (5526)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_1460","edam:http:\/\/edamontology.org\/operation_0337"],"audience":"\u003Cp\u003EThis webinar is for individuals with an interest in visualising molecular structures. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of protein biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"How to make training FAIR","start_date":"2021-03-18 15:00:00","endDate":"2021-03-18 16:00:00","description":"\u003Cp\u003EThere is a wealth of training content developed and delivered across the globe each year, there will be many similar sessions on similar topics all delivered to similar audiences. At the same time, there will be trainers looking for inspiration and ideas on how to approach new topics or on new ways to teach old topics; as well as trainees looking for materials to further their own knowledge. Many trainers (or lecturers\/educators etc) do not share their materials, or if materials are shared they are not easily found or re-used by others.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EDuring this webinar, we will give you some tips and suggestions on how you can make more of the training materials you produce and encourage others to do the same. FAIR is not just for data - we can make our training materials FAIR too. Join us to find out the benefits of sharing your FAIR materials and some simple ways you can make it easy for others to use your materials in their teaching, or as aids for individuals to learn more.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThe \u201cHow FAIR are you\u201d webinar series and hackathon aim at increasing and facilitating the uptake of FAIR approaches into software, training materials and cohort data, to facilitate responsible and ethical data and resource sharing and implementation of federated applications for data analysis.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/how-make-training-fair","hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Marta Lloret Llinares","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_3669"],"audience":"\u003Cp\u003EThis webinar is for anyone who is interested in applying FAIR principles to training materials; no prior skills are required.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","sponsor":[null],"contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"BioSamples: a FAIR sample metadata archive","start_date":"2021-03-17 15:30:00","endDate":"2021-03-17 16:30:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/biosamples\/\u0022\u003EBioSamples \u003C\/a\u003Eis the EMBL-EBI archive which records and supplies metadata about biological samples and connects sample records across EBI databases to the corresponding experimental data. BioSamples aims to improve metadata quality through ontology annotation, metadata curation, data validation and certification.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EIn this webinar, we will briefly introduce BioSamples and highlight specific use cases from current collaborations and features deployed to increase FAIRness (Findability, Accessibility, Interoperability, Reusability) of the data.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EOngoing collaboration with major consortia rely on and drive addition of new features to BioSamples:\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EAbility to walk an ontology hierarchy such as disease for the Global Alliance for Genomics and Health (GA4GH)\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003ESynthetic dataset and linking to human controlled access data for the \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003ECommon Infrastructure for National Cohorts in Europe, Canada, and Africa (CINECA)\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/li\u003E\r\n\t\u003Cli\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EMetrics and automated processes for FAIRplus\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/biosamples-fair-sample-metadata-archive","keywords":["EBI BioSamples Database (5493)","Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3071","edam:http:\/\/edamontology.org\/data_0957"],"audience":"\u003Cp\u003EBiologists and bioinformaticians who are interested in sample metadata and FAIR practices.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introduction to exploring genome-phenome data with EGA","start_date":"2021-03-10 15:30:00","endDate":"2021-03-10 16:30:00","description":"\u003Cp\u003E\u003Ca href=\u0022https:\/\/ega-archive.org\/\u0022\u003EEuropean Genome-phenome Archive (EGA)\u003C\/a\u003E is a permanent repository for all types of potentially identifiable genetic and phenotypic data from biomedical research projects.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis\u0026nbsp;webinar aims to cover a quick introduction to EGA\u0026nbsp;by exploring topics ranging from searching and accessing data in EGA to\u0026nbsp;interpreting\u0026nbsp;Data Use Ontology (DUO) codes. We will also demonstrate\u0026nbsp;downloading data with an EGA test account.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-exploring-genome-phenome-data-ega","keywords":["European Genome-phenome Archive (5501)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0625"],"audience":"\u003Cp\u003EAnyone who is interested in secure archiving or accessing distribution services for controlled access to human biomedical omics data. An undergraduate level knowledge of biology, and in particular some knowledge of genetics and genomics, would be an advantage.\u0026nbsp;\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Practically FAIR","start_date":"2021-03-4 15:00:00","endDate":"2021-03-4 16:00:00","description":"\u003Cp\u003EThis webinar will focus on practical applications of the FAIR data principles, particularly in the context of clinical bioinformatics. We will highlight several example projects that have put the FAIR principles in practice, and discuss the advantages and some of the challenges involved. ELIXIR Galaxy community (elixir-europe.org\/communities\/galaxy) promotes the use of Galaxy projects that enhance the FAIRness in data analysis. We will demonstrate the Galaxy services that deliver practical FAIR data analysis with \u201cSingle Sign-On\u201d capability provided by ELIXIR-AAI. The aim is to provide (medical) researchers with the practicalities of implementing and using FAIR principles in the context of the CINECA project as applied to translational research at Erasmus University Medical Center.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThe \u201cHow FAIR are you\u201d webinar series and hackathon aim at increasing and facilitating the uptake of FAIR approaches into software, training materials and cohort data, to facilitate responsible and ethical data and resource sharing and implementation of federated applications for data analysis.\u003Cbr \/\u003E\r\n\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/practically-fair","hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Marta Lloret Llinares","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_2409","edam:http:\/\/edamontology.org\/topic_3342","edam:http:\/\/edamontology.org\/topic_3365"],"audience":"\u003Cp\u003EResearchers, especially those working in clinical bioinformatics, with an interest in applying FAIR principles to data analysis.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","sponsor":[null],"contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Annotating your own variation data with the Ensembl Variant Effect Predictor (VEP)","start_date":"2021-03-3 15:30:00","endDate":"2021-03-3 16:30:00","description":"\u003Cp\u003EThe Ensembl VEP is a powerful tool that allows you to input a list of genetic variants and determines which genes are affected and how. In this webinar, you\u2019ll learn how to use the online VEP tool, which is suitable for analysing short lists of genetic variants, and the offline tool, which allows you to annotate whole genome variant calls.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/annotating-your-own-variation-data-ensembl-variant-effect-predictor-vep","keywords":["Ensembl Variant Effect Predictor (8894)","Ensembl (5504)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_3197"],"audience":"\u003Cp\u003EThis webinar is suitable to any clinical or research scientists who are\u0026nbsp;interested in exploring genetic\u0026nbsp;variants and their effect. In this webinar we will\u0026nbsp;use examples from\u0026nbsp;human clinical\u0026nbsp;data\u0026nbsp;but the VEP\u0026nbsp;tool is available for other species too.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Exploring non\u2010coding RNAs in RNAcentral","start_date":"2021-02-10 15:30:00","endDate":"2021-02-10 16:30:00","description":"\u003Cp\u003ERNAcentral is a database of non-coding RNA sequences that provides a unified view of \u0026gt;40 specialised databases. This webinar will give an overview of the data found in RNAcentral as well as the RNAcentral website.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe team will share tips on how to efficiently explore the data using text and sequence similarity search, how to visualise RNA secondary structure, and how to access the bulk data in the FTP archive. More advanced functionality, including the programmatic data access and public Postgres database, will also be discussed.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EJoin the webinar to also learn what\u0027s new in RNAcentral or ask any questions you may have.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/exploring-non-coding-rnas-rnacentral","keywords":["RNAcentral (5477)","DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/format_1213","edam:http:\/\/edamontology.org\/topic_0659"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who would like to learn more about using RNAcentral. No prior knowledge of bioinformatics is required, but\u0026nbsp;undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"UniProt for proteomics scientists","start_date":"2021-02-3 15:30:00","endDate":"2021-02-3 16:30:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003EUniProt is a comprehensive, expert-led, publicly available database of protein sequence, function and variation information.\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003EThis webinar will give a brief introduction to the UniProt website and then highlight resources available that proteomics scientists or users with large protein datasets may find useful in analysing their data. This will encompass our proteomes service, how to convert and retrieve ID mappings, and how to carry out a peptide search.\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003EThe webinar will then go on to introduce the UniProt Proteins API which allows researchers to access and download UniProt data alongside large-scale genomic, proteomics and variation data without needing prior in-depth knowledge of programmatic languages. Data is available for download and querying in a range of formats; including XML, FASTA and PEFF. The API multi-query search functions will be demonstrated and useful features such as searching entries by peptide, and searching for proteomic peptides by protein entry will be explained.\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003EThe UniProt Proteins API is available at\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/proteins\/api\/doc\u0022\u003E\/\/www.ebi.ac.uk\/proteins\/api\/doc\u003C\/a\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/uniprot-proteomics-scientists","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3520"],"audience":"\u003Cp\u003EThis webinar is aimed at computational and wet-lab scientists, with no prior knowledge of programming required. An undergraduate level knowledge of protein biology will be useful.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EFor those already familiar with programming languages that require a more detailed explanation of accessing UniProt programmatically please see the webinar \u2018\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/online\/courses\/embl-ebi-programmatically\/uniprot-programmatically\/\u00a0\u0022\u003EUniprot:\u0026nbsp;programmatically\u003C\/a\u003E\u2019.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Preprints discovery 101: Tips \u0026 tricks for authors","start_date":"2021-01-27 15:30:00","endDate":"2021-01-27 16:30:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003EPreprints enable researchers to rapidly share their work publicly before the formal peer review process. This webinar will demonstrate how to incorporate preprints in your literature search routine by using the discovery tools developed by Europe PMC. \u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EEurope PMC indexes preprints abstracts and full text COVID-19 preprints from many life sciences preprint servers alongside published articles. Preprints in Europe PMC are linked to data and platforms that comment on or peer review preprints. We will demonstrate how to find the data behind preprints as well as comments and reviews associated with a given preprint.\u0026nbsp;\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003EWe will also share useful tips for posting your pre-prints, claiming a pre-print to your ORCID and tracking your pre-prints\u2019 citations, revisions or recommendations by readers.\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003ETo learn more about using Europe PMC in your research try our\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/online\/course\/europe-pmc-quick-tour-0\u0022\u003EEurope PMC: Quick tour\u003C\/a\u003E\u0026nbsp;or our webinar\u0026nbsp;\u003Cspan\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/training\/online\/course\/effective-literature-research-europe-pmc\u0022\u003EUsing Europe PMC for effective literature research\u003C\/a\u003E.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/preprints-discovery-101-tips-tricks-authors","keywords":["Europe PubMed Central (5507)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3068"],"audience":"\u003Cp\u003EThis webinar is suitable to any\u0026nbsp;biological researchers who wish to learn more about incorporating pre-prints into their research. No prior knowledge is required.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"An introduction to EMBL-EBI resources","start_date":"2021-01-20 15:30:00","endDate":"2021-01-20 16:30:00","description":"\u003Cp\u003EThe EMBL-EBI is the home of the world\u0027s most comprehensive range of freely available molecular databases and resources. Our resources help researchers share and analyse data and perform complex queries in many different ways. Join us for a tour of the core data resources at EMBL-EBI.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-embl-ebi-resources","keywords":["EBI Search (11228)","Training (Training)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0091","edam:http:\/\/edamontology.org\/operation_2421"],"audience":"\u003Cp\u003EThis webinar is for anyone with an interest in biology or bioinformatics. No prior skills are required.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Automated annotation in UniProt","start_date":"2021-01-14 15:30:00","endDate":"2021-01-14 16:30:00","description":"\u003Cp\u003EUniProt is a high quality, comprehensive protein resource in which the core activity is the expert review and annotation of proteins where the function has been experimentally investigated. At the same time the UniProt database contains large numbers of proteins which are predicted to exist from gene models, but which do not have associated experimental evidence indicating their function. UniProt commits significant resources to developing computational methods for functional annotation of these predicted proteins based on the data in entries that have gone through the expert review process.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nWe will describe the two main automated annotation systems currently in use. First, UniRule, which is an established UniProt system in which curators manually develop rules for annotation. Second ARBA (Association-Rule-Based Annotator), which has recently been introduced as a significant improvement in fully automated functional annotation. ARBA is a multiclass learning system which uses rule mining techniques to generate concise annotation models. ARBA employs a data exclusion set that censors data not suitable for computational annotation, and generates human-readable rules for each UniProt release.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nWe will also briefly touch on the mechanism UniProt has set up to enable researchers to run these automated annotation systems on their own protein datasets.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/automated-annotation-uniprot","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/operation_0226"],"audience":"\u003Cp\u003EThis webinar is for scientists and bioinformaticians with an interest in functional annotation of protein sequences.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Uncovering protein function with UniProt","start_date":"2020-12-10 15:30:00","endDate":"2020-12-10 16:30:00","description":"\u003Cp\u003EThis\u0026nbsp;webinar will discuss what functional information is available in UniProt and\u0026nbsp;where that\u0026nbsp;information comes from. It will also describe\u0026nbsp;how it the information is\u0026nbsp;added to the resource and how to find it on the UniProt website.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/uncovering-protein-function-uniprot","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3520","edam:http:\/\/edamontology.org\/data_2007","edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003EThis webinar is aimed at students or early stage researchers beginning to use bioinformatics resources in their studies\/research who wish to learn more about using UniProt to learn more about function of proteins. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":" Introduction to the Complex Portal","start_date":"2020-12-2 15:30:00","endDate":"2020-12-2 16:30:00","description":"\u003Cp\u003E\u003Cspan\u003EThis webinar will introduce the Complex Portal, an encyclopaedic database for information on macromolecular complexes.\u0026nbsp;In this webinar we will explain the coverage and curation priorities of the Complex Portal, show how to search for complexes using a variety of accession numbers, keywords and how to use the organism search. We will also demonstrate examples of complex details pages that include\u0026nbsp;visualisation tools and link-outs to related database.\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-complex-portal","keywords":["Complex Portal (5963)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3047"],"audience":"\u003Cp\u003EThis\u0026nbsp;webinar is aimed at individuals who wish to learn more about the Complex Portal.\u0026nbsp;No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Sequence analysis tools in UniProt: BLAST and Align","start_date":"2020-11-26 15:30:00","endDate":"2020-11-26 16:30:00","description":"\u003Cp\u003EBLAST and multiple sequence alignments are essential methods commonly used to find and compare protein or nucleotide sequences. In this webinar, we will demonstrate how you can access and run these sequence analysis tools in UniProt, a comprehensive resource of protein sequence and function. We will show you how to navigate the results and how you can exploit UniProt protein annotation to expand further the analysis of your results.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/sequence-analysis-tools-uniprot-blast-and-align","keywords":["UniProt Align (8891)","UniProt BLAST (8892)","UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_2291","edam:http:\/\/edamontology.org\/format_1333","edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/operation_0504"],"audience":"\u003Cp\u003EThis webinar is aimed at students or early stage researchers beginning to use bioinformatics resources in their studies\/research who wish to learn how to run a BLAST or a sequence alignment in UniProt. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Discovering scientific evidence using Europe PMC SciLite annotation","start_date":"2020-11-25 15:30:00","endDate":"2020-11-25 16:30:00","description":"\u003Cp\u003EFor readers of\u0026nbsp;life sciences journal articles, annotations make it easier to scan an article and get a quick overview, find key concepts, and discover evidence, such as gene disease associations or molecular interactions. This webinar will demonstrate how to use the power of text mining to find evidence in scientific literature.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/discovering-scientific-evidence-using-europe-pmc-scilite-annotation","keywords":["Europe PubMed Central (5507)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_0305"],"audience":"\u003Cp\u003EThis webinar is\u0026nbsp;suitable for\u0026nbsp;scientists, database curators or anyone who wishes to learn more about how to use annotations.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"500","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"MGnify API: accessing microbiome data computationally","start_date":"2020-11-18 15:30:00","endDate":"2020-11-18 16:30:00","description":"\u003Cp\u003EThis webinar will provide an overview of the MGnify API. MGnify offers an automated pipeline for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional \u0026amp; metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe webinar will include how to utilise the API using a browser,\u0026nbsp;where to find documentation,\u0026nbsp;how to use filtering and pagination,\u0026nbsp;available output formats,\u0026nbsp;and scripting examples in Python.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mgnify-api-accessing-microbiome-data-computationally","keywords":["MGnify (5524)","DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3697"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who would like to learn more about using the MGnify API, however some familiarity with MGnify and programmatic access methods is recommended.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Understanding proteomes","start_date":"2020-11-12 15:30:00","endDate":"2020-11-12 16:30:00","description":"\u003Cp\u003EA proteome is the set of proteins thought to be expressed by an organism. Through the Proteomes portal, UniProt provides a large collection of proteomes for organisms whose genomes have been sequenced and annotated. Currently, our database contains more than 300,000 proteomes spanning eukaryotes, bacteria, archea and viruses.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will show you how to retrieve proteomes of interest and download the corresponding datasets. We will also cover where proteomes come from and the features available to help users find the right dataset for their work.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/understanding-proteomes","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003EThis webinar is aimed at students or early stage researchers beginning to use bioinformatics resources in their studies\/research who wish to learn more about proteomes. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"MGnify today: analysing microbiome data","start_date":"2020-11-11 15:30:00","endDate":"2020-11-11 16:30:00","description":"\u003Cp\u003EThis webinar will describe how MGnify can assist you in your microbiome research by providing a broad overview of resources available in MGnify.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EMGnify offers an automated pipeline for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional \u0026amp; metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. During this\u0026nbsp;webinar, we will cover what types of microbiome data are included, improvements we have made to our analysis pipeline, as well as ways to search for data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mgnify-today-analysing-microbiome-data","keywords":["MGnify (5524)","DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3697"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who would like to learn more about using MGnify. No prior knowledge of bioinformatics is required, but\u0026nbsp;undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Variant submission and data access at the European Variation Archive","start_date":"2020-11-4 15:30:00","endDate":"2020-11-4 16:30:00","description":"\u003Cp\u003EThis webinar will cover how to access data using the EVA UI\/API and the methodology of variant data submission to the EVA, specifically focusing on data transformation and formats. With a new version of the variant ID data release now available, this webinar will also cover what has been updated and what to expect from future releases.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/variant-submission-and-data-access-european-variation-archive","keywords":["European Variation Archive (5971)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0199"],"audience":"\u003Cp\u003EThis webinar is targeted to those working with genetic variant data from any species, suitable for web lab scientists, bioinformaticians, and clinical specialists.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Europe PMC: Programmatic access","start_date":"2020-11-3 14:00:00","endDate":"2020-11-3 15:00:00","description":"\u003Cp\u003EEurope PMC is an open repository, providing access to worldwide biomedical literature, including articles, preprints, books, patents, and clinical guidelines. This webinar will introduce the Europe PMC Articles RESTful API and show how to programmatically access publications and related information, such as citations, references, data links, or text-mined terms.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/europe-pmc-programmatic-access","keywords":["Europe PubMed Central (5507)","Literature (literature)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Dayane Rodrigues Araujo","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_0305"],"audience":"\u003Cp\u003EThis webinar is for those who want to learn about accessing the Europe PMC search programmatically. Some prior knowledge of programmatic access is recommended.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introducing the new UniProt Disease Portal","start_date":"2020-10-29 15:30:00","endDate":"2020-10-29 16:30:00","description":"\u003Cp\u003EThis webinar will provide an interactive introduction to the new UniProt Disease Portal: a single centralised resource of UniProt disease-centric information which has been developed with the help of our users to better serve the needs of the research community and facilitate protein discoverability.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe UniProt knowledgebase (UniProtKB) supports biomedical research by providing a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. To do this, UniProt integrates, interprets and standardises data from a range of sources including scientific literature, protein sequence analysis tools, other databases and automatic annotation systems to provide a detailed overview of the available protein knowledge.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will introduce you to the UniProt Disease Portal which aims to help researchers explore and access current genomic disease-related data from the UniProtKB database, but in a single centralised resource. The portal incorporates UniProt functional annotations, protein network visualisations, genomic variant and drug-related data, and organises in a way that allows users to easily visualise and compare data to identify similarities using variants, protein interactions, diseases, and drug data.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe Disease Portal is currently in its first beta release, so we hope that this interactive introduction will give you an understanding of how to access disease-centric protein data in UniProt and encourage your feedback to assist ongoing development of the Portal to further suit the requirements of our users.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introducing-new-uniprot-disease-portal","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/data_0896","edam:http:\/\/edamontology.org\/topic_3336"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who have an interest in protein disease biology, would like an interactive introduction to the new disease portal, and\/or wish to learn about how disease data is collected and annotated in UniProt. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"The PRIDE database: storing, disseminating and integrating proteomics data in the public domain","start_date":"2020-10-28 15:30:00","endDate":"2020-10-28 16:30:00","description":"\u003Cp\u003EThis webinar will provide an introduction to proteomics approaches and the PRIDE database, followed by more detailed examples of PRIDE public data re-use, including \u201cbig data\u201d approaches.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/pride-database-storing-disseminating-and-integrating-proteomics-data-public-domain","keywords":["PRIDE: The Proteomics Identifications Database (5536)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3520","edam:http:\/\/edamontology.org\/data_1145","edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003EThis webinar is suitable for biologists and bioinformaticians with an interest in proteomics, as\u0026nbsp;well as proteomics bioinformaticians or scientific programmers expert in proteomics.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Open with purpose: How and why to make your data open","start_date":"2020-10-23 14:30:00","endDate":"2020-10-23 15:30:00","description":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EAs part of EMBL-EBI\u2019s celebration of Open Access week, this special one-off webinar will give you insight into the benefits of open access data, alongside guidance and tips on managing your data.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EFeaturing four members of EMBL-EBI\u2019s resource teams (from BioSamples, ENA, IntAct\/Complex Portal \u0026amp; Europe PMC), you\u2019ll get an overview of Open and FAIR data, insights into submission processes and support, the importance of open literature and some hints, tips and tricks for ensuring your data can easily be made available to others. You\u2019ll also get an opportunity to ask live questions to all four of our speakers, and find out where you can learn more.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E \u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/open-purpose-how-and-why-make-your-data-open","keywords":["Complex Portal (5963)","EBI BioSamples Database (5493)","ENA Sequence Search (5577)","Europe PubMed Central (5507)","IntAct Molecular Interaction Database (5516)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3071"],"audience":"\u003Cp\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003E\u003Cspan\u003EThis webinar is for anyone who is interested in learning more about open access data and how they can make their data available to others.\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/span\u003E\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Multiomics comparative pathway analysis with ReactomeGSA","start_date":"2020-10-21 15:30:00","endDate":"2020-10-21 16:30:30","description":"\u003Cp\u003EThe webinar will demonstrate\u0026nbsp;how to\u0026nbsp;perform multiomics comparative pathway analyses using ReactomeGSA. This will cover the web interface and R package. We will demonstrate how to use ReactomeGSA to quickly derive novel biological knowledge by combining multiple datasets. In addition, we will also\u0026nbsp;cover the function of\u0026nbsp;ReactomeGSA for\u0026nbsp;investigating\u0026nbsp;scRNA-seq cell clusters at\u0026nbsp;the pathway level.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/multiomics-comparative-pathway-analysis-reactomegsa","keywords":["Reactome pathways database (5538)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3391","edam:http:\/\/edamontology.org\/data_2600"],"audience":"\u003Cp\u003EBioinformaticians and wet-lab scientists who are interested in analysing their proteomics\/transcriptomics\/scRNA-seq data.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Data visualisation at PDBe","start_date":"2020-10-20 15:30:00","endDate":"2020-10-20 16:30:00","description":"\u003Cp\u003EThis webinar will introduce some of the data visualisations available from PDBe, how to add these to your own website and how to customise them for your own requirements. There will also be specific case studies that demonstrate how these visualisations can be used and implemented.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar is part of a\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/about\/events\/pdbe-api-webinar-series\u0022\u003E6-part PDBe API webinar series\u003C\/a\u003E, introducing different levels of programmatic access at PDBe.The series will range from basic data retrieval and search using the PDBe API to more advanced features, including access and reuse of PDBe data visualisation components.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/data-visualisation-pdbe","keywords":["Protein Data Bank in Europe (5526)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_2814"],"audience":"\u003Cp\u003EThis webinar is open to anyone who is interested in learning about the programmatic access of PDBe.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"A guide to UniProt for students","start_date":"2020-10-14 15:30:00","endDate":"2020-10-14 16:30:00","description":"\u003Cp\u003E\u003Ca href=\u0022https:\/\/www.uniprot.org\/\u0022\u003EUniProt\u003C\/a\u003E provides the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will guide you through ways in which students and researchers at all career stages may take a structured approach to access the data in the UniProtKB and Proteomes sections of the UniProt protein function database.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe\u0026nbsp;webinar will discuss\u0026nbsp;the types of data that can be accessed, and using sequence analysis tools, how this data can be analysed to answer biological questions. We will demonstrate how to find the function of a protein, how the protein components of a pathway may be identified, features of proteins of interest can be compared, similar sections of sequence can be sought in other species and how whole data sets containing all the proteins expressed in an organism can be obtained. By accessing sequence, structural and functional data through UniProt, we want researchers to be part of data\u2019s biological journey and support further work and adventures along the way!\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/guide-uniprot-students","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_3021","edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003EThis webinar is aimed at students or early researchers beginning to use bioinformatics resources in their studies\/research who wish to learn more about UniProt. No prior knowledge of bioinformatics is required, but\u0026nbsp;undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"PDBe tools in GitHub","start_date":"2020-10-13 15:30:00","endDate":"2020-10-13 16:30:00","description":"\u003Cp\u003EThis webinar will show you how to access some of the software packages created at PDBe, used to generate the data displayed on our website. This will include a walkthrough of our github repositories, highlighting the types of packages available, how to access them and some examples of how they can be used.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar is part of a\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/about\/events\/pdbe-api-webinar-series\u0022\u003E6-part PDBe API webinar series\u003C\/a\u003E, introducing different levels of programmatic access at PDBe.The series will range from basic data retrieval and search using the PDBe API to more advanced features, including access and reuse of PDBe data visualisation components.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/pdbe-tools-github","keywords":["Protein Data Bank in Europe (5526)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3372"],"audience":"\u003Cp\u003EThis webinar is open to anyone who is interested in learning about the programmatic access of PDBe.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"The Ensembl Rapid Release genome browser","start_date":"2020-10-7 15:30:00","endDate":"2020-10-7 16:30:00","description":"\u003Cp\u003EThis webinar will introduce you to the data available in the Ensembl Rapid Release site, a new, lightweight genome browser designed to allow quick release of the latest genome annotation for a large number of vertebrate and non-vertebrate species.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ensembl-rapid-release-genome-browser","keywords":["Ensembl Genomes (5505)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_3918","edam:http:\/\/edamontology.org\/operation_0362"],"audience":"\u003Cp\u003EThis webinar is suitable for\u0026nbsp;any wet-lab scientists and bioinformaticians who are interested in studying genomes.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Using the PDBe graph API","start_date":"2020-10-6 15:30:00","endDate":"2020-10-6 16:30:00","description":"\u003Cp\u003EThis webinar will introduce the PDBe graph API, which is generated from the PDBe graph database and contains an even richer level of data than our standard API. We will highlight how this API supports our PDBe-KB aggregated views, with specific case studies that demonstrate the possibilities through this API.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar is part of a\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/about\/events\/pdbe-api-webinar-series\u0022\u003E6-part PDBe API webinar series\u003C\/a\u003E, introducing different levels of programmatic access at PDBe.The series will range from basic data retrieval and search using the PDBe API to more advanced features, including access and reuse of PDBe data visualisation components.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/using-pdbe-graph-api","keywords":["Protein Data Bank in Europe (5526)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_0883"],"audience":"\u003Cp\u003EThis webinar is open to anyone who is interested in learning about the programmatic access of PDBe.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Reproducibility in Systems Biology Modelling: BioModels\u0027 role","start_date":"2020-09-30 15:30:00","endDate":"2020-09-30 16:30:00","description":"\u003Cp\u003EThis webinar,\u0026nbsp;will give an overview of BioModels, a popular repository of curated systems biology models.\u0026nbsp;It will also provide a brief introduction to\u0026nbsp;BioModels Parameters, a sub-resource within BioModels that provides model parts, followed by discussion of a study carried out to assess how reproducible systems biology models are,\u0026nbsp;the reasons why mathematical models fail to reproduce simulation results and the solution we propose to tackle lack of reproducibility.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/reproducibility-systems-biology-modelling-biomodels-role","keywords":["BioModels database (5492)","Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_0950"],"audience":"\u003Cp\u003EThis webinar is suitable for\u0026nbsp;any researchers interested in systems biology, computational biology modelling and reproducibility.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Creating complex PDBe API queries","start_date":"2020-09-29 15:30:00","endDate":"2020-09-29 16:30:00","description":"\u003Cp\u003EThis webinar will demonstrate how to create more complex queries by combining the PDBe search API with numerous other calls. By introducing specific case studies, we will highlight the scope of PDBe programmatic access.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar is part of a\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/about\/events\/pdbe-api-webinar-series\u0022\u003E6-part PDBe API webinar series\u003C\/a\u003E, introducing different levels of programmatic access at PDBe.The series will range from basic data retrieval and search using the PDBe API to more advanced features, including access and reuse of PDBe data visualisation components.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/creating-complex-pdbe-api-queries","keywords":["Protein Data Bank in Europe (5526)","protein"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_2479"],"audience":"\u003Cp\u003EThis webinar is open to anyone who is interested in learning about the programmatic access of PDBe.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Investigating genotype-phenotype data using the GWAS Catalog","start_date":"2020-09-23 15:30:00","endDate":"2020-09-23 16:30:00","description":"\u003Cp\u003EThis webinar will include a brief introduction to the GWAS Catalog, followed by hands-on demonstrations and exercises covering different methods for accessing GWAS Catalog data, focusing on the most common use-cases. This will include our web-based search interface, with a number of different tools for data access and visualisation, and download of filtered datasets. We will also briefly introduce and describe how to submit your own data.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/investigating-genotype-phenotype-data-using-gwas-catalog","keywords":["NHGRI-EBI GWAS Catalog (5685)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3517","edam:http:\/\/edamontology.org\/operation_3918"],"audience":"\u003Cp\u003EThis webinar will be suitable to a wide range of scientists, clinicians and statisticians who are interested in the applications of GWAS Catalog that includes prioritising candidate loci, gathering statistics on traits or populations of interest, exploring disease mechanisms, predicting risk of disease, and discovering drug targets, among other goals.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Searching with the PDBe API","start_date":"2020-09-22 15:30:00","endDate":"2020-09-22 16:30:00","description":"\u003Cp\u003EThis webinar will introduce the PDBe search API, a powerful Solr-based query system that underlies the PDBe search pages. The breadth of search options will be highlighted, along with specific case studies that demonstrate what is possible through the search API.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar is part of a\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/about\/events\/pdbe-api-webinar-series\u0022\u003E6-part PDBe API webinar series\u003C\/a\u003E, introducing different levels of programmatic access at PDBe.The series will range from basic data retrieval and search using the PDBe API to more advanced features, including access and reuse of PDBe data visualisation components.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/searching-pdbe-api","keywords":["Protein Data Bank in Europe (5526)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_2421","edam:http:\/\/edamontology.org\/data_0883"],"audience":"\u003Cp\u003EThis webinar is open to anyone who is interested in learning about the programmatic access of PDBe.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"The International Mouse Phenotyping Consortium (IMPC): a large-scale functional catalogue of mammalian genes","start_date":"2020-09-16 15:30:00","endDate":"2020-09-16 16:30:00","description":"\u003Cp\u003EThe IMPC is an international research infrastructure,\u0026nbsp;comprised by 21 of the leading mouse genetics centres worldwide,\u0026nbsp;that is systematically identifying\u0026nbsp;the function of every protein-coding gene in the mouse genome. Despite having sequenced the entire genomes of many species, the exact function of most genes remains unknown. To address this, the IMPC is coordinating the production of a knockout mouse strain per protein-coding gene, which are then characterised using a standardised, broad-based phenotyping pipeline, giving insights into the function for genes for which very little is known. Our open-access database now includes phenotyping data for nearly 6,500 mouse genes.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will discuss some of the exciting discoveries in genetic disease, development and sexual dimorphism that biologists and clinical researchers are making using IMPC resources. The IMPC strives to generate data that ultimately help understand human health and disease and\u0026nbsp;identify new targets for therapeutic intervention. This data is also useful for research focusing on other mammalian species, including evolutionary research studies seeking to understand adaptation.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAll IMPC data is freely available to use and can be accessed at\u0026nbsp;\u003Ca href=\u0022http:\/\/www.mousephenotype.org\/\u0022\u003Ewww.mousephenotype.org\u003C\/a\u003E. The IMPC would like to encourage researchers to get in touch via the\u0026nbsp;\u003Ca href=\u0022http:\/\/www.mousephenotype.org\/\u0022\u003EIMPC website\u003C\/a\u003E\u0026nbsp;if they are interested in using IMPC data and would like\u0026nbsp;further guidance on how to use our data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/international-mouse-phenotyping-consortium-webinar","keywords":["International Mouse Phenotyping Consortium Portal (5514)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0625","edam:http:\/\/edamontology.org\/topic_3679","edam:http:\/\/edamontology.org\/topic_3053"],"audience":"\u003Cp\u003EThis webinar is suitable for anyone interested in learning more about the IMPC. No prior knowledge of bioinformatics is required but an undergraduate-level knowledge of biology is recommended.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Introduction to PDBe programmatic access","start_date":"2020-09-15 15:30:00","endDate":"2020-09-15 16:30:00","description":"\u003Cp\u003EThis webinar will give an introduction to programmatic access at PDBe, highlighting the type of data that is available and how this can be utilised.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar is part of a\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/about\/events\/pdbe-api-webinar-series\u0022\u003E6-part PDBe API webinar series\u003C\/a\u003E, introducing different levels of programmatic access at PDBe.The series will range from basic data retrieval and search using the PDBe API to more advanced features, including access and reuse of PDBe data visualisation components.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-pdbe-programmatic-access","keywords":["Protein Data Bank in Europe (5526)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_2479"],"audience":"\u003Cp\u003EThis webinar is open to anyone who is interested in learning about the programmatic access of PDBe.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EurOPDX IT tools to support cancer research with patient-derived xenograft models","start_date":"2020-09-8 15:00:00","endDate":"2020-09-8 16:00:00","description":"\u003Cp\u003EThe new\u0026nbsp;\u003Ca href=\u0022https:\/\/www.europdx.eu\/\u0022\u003EEurOPDX Research Infrastructure\u0026nbsp;\u003C\/a\u003E(RI), funded by the European Union Horizon 2020 programme, aims to improve cancer drug development success rates through the enablement of collaborative cancer research using patient-derived xenograft (PDX) models. In particular, we are developing efficient and user-friendly IT tools to optimise access to, and data searching of the collection of PDX models and their clinical, molecular and pharmacological annotations.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nFollowing a first webinar in October 2019 introducing the new\u0026nbsp;\u003Ca href=\u0022https:\/\/dataportal.europdx.eu\/\u0022\u003EEurOPDX Data Portal\u003C\/a\u003E, we will present the latest data and functionalities added to the repository, and associated IT tools to browse molecular data associated with the models: the EurOPDX instance of the well-known cBioPortal, and the GenomeCruzer for 3D interrogation of data.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThe webinar will in particular support the last applicants to our PDX access grant programme (last deadline on 18th September 2020,\u0026nbsp;\u003Ca href=\u0022https:\/\/www.europdx.eu\/europdxri-ta\u0022\u003Ehttps:\/\/www.europdx.eu\/europdxri-ta\u003C\/a\u003E).\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/europdx-it-tools-support-cancer-research-patient-derived-xenograft-models","keywords":["Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_2640"],"audience":"\u003Cp\u003EThis webinar is for individuals who are working with patient-derived xenograft models in the context of cancer drug discovery. No prior knowledge of bioinformatics is required but an undergraduate-level knowledge of biology is recommended.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"InterProScan","start_date":"2020-06-24 15:30:00","endDate":"2020-06-24 16:30:00","description":"\u003Cp\u003EThis webinar is about\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/interpro\/about\/interproscan\u0022\u003EInterProScan\u003C\/a\u003E,\u0026nbsp;the underlying software application that scans both protein and nucleic acid sequences against InterPro\u0027s predictive models, which are provided by the InterPro\u2019s member databases.\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/interpro\/\u0022\u003EInterPro\u003C\/a\u003E\u0026nbsp;is a freely available resource used to classify sequences into protein families and to predict the presence of important domains and sites.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/interproscan","keywords":["InterProScan (5580)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_2976","edam:http:\/\/edamontology.org\/topic_0623"],"audience":"\u003Cp\u003EThis webinar is aimed at scientists and bioinformaticians with an interest in using InterProScan for protein functional analysis or anyone with interest in protein sequence annotation using InterPro. A basic knowledge of using the command line interface is recommended for this webinar.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Exploring metabolite metabolism using the Enzyme Portal","start_date":"2020-06-10 15:30:00","endDate":"2020-06-10 16:30:00","description":"\u003Cp\u003EThis webinar will provide a practical overview of how to use the Enzyme Portal to find enzyme-related information about metabolites. The Enzyme Portal is a freely available resource to find and explore enzyme features. It integrates relevant enzyme data for a wide range of species from various resources including UniProt, PDB, Reactome and CHEMBL. We will demonstrate how to use the Enzyme Portal to find relevant enzymes involved in a specific metabolite biosynthesis or catabolism.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/exploring-metabolite-metabolism-using-enzyme-portal","keywords":["Enzyme Portal (5506)","Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0821","edam:http:\/\/edamontology.org\/topic_3172"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about enzymes and metabolites. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"PDBe Graph Database: A Neo4J-driven integrative knowledge graph for structural data","start_date":"2020-05-27 15:30:00","endDate":"2020-05-27 16:30:00","description":"\u003Cp\u003EThis webinar will introduce the concepts of a graph database and describe how we used a graph-approach for integrating the structural data of the Protein Data Bank.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThe presented PDBe knowledge graph combines annotations provided by PDBe-KB partners with the core PDB archive. Each PDB entry can be thought of as a tree, with the root being the PDB entry, connected to chains and entities, which are then connected to residues. Each of the more than 150 million PDB residues, the leaves of the tree representation, are linked to annotations that make it easier to answer scientific questions such as: Can we find small molecules which have the same scaffold, and interact with the same binding sites? Or, can we find macromolecular interaction interfaces which have highly conserved residues, and are annotated to be structurally flexible?\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThe webinar will help the audience answer these, and other similar scientific questions and will provide a solid foundation for taking advantage of the PDBe knowledge graph and use it as an invaluable research tool.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/pdbe-graph-database-neo4j-driven-integrative-knowledge-graph-structural-data","keywords":["Protein Data Bank in Europe (5526)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0154","edam:http:\/\/edamontology.org\/data_1460"],"audience":"\u003Cp\u003EThis webinar is best suited for bioinformaticians with some experience in analysing structural data from the PDB using programmatic and\/or high-throughput data access.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Accessing InterPro programmatically","start_date":"2020-05-20 15:30:00","endDate":"2020-05-20 16:30:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EThis is the third and last part of a webinar series on InterPro which is held between May 6th 2020 and May 20th 2020.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EInterPro is a database that helps users to understand the possible functions of proteins sequence by identifying what family it belongs to or what domains and motifs it contains. To deal with the growing volume of protein sequence data and an increasing demand to retrieve subsets of the data, often via programmatic access, the InterPro website has been entirely redesigned. It provides additional features and more flexibility in querying, presenting and retrieving data. The website relies on an Application Programming Interface (API) which can also be utilised by users for direct access to the data.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EThis webinar describes how the InterPro data is structured in the API, and how it could be accessed programmatically for further bioinformatics analyses.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EYou can access the slides via\u0026nbsp;\u003Ca href=\u0022https:\/\/gustavo-salazar.github.io\/ProteinFamiliesTalks\/InterProAPI.html#\/\u0022\u003EGitHub\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/accessing-interpro-programmatically","keywords":["InterPro (5519)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_1777","edam:http:\/\/edamontology.org\/operation_2479","edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp\u003EThis webinar is aimed at scientists and bioinformaticians, with basic programming knowledge, who are interested in accessing the InterPro database programmatically.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Finding the data behind research articles with Europe PMC","start_date":"2020-05-19 14:00:00","endDate":"2020-05-19 15:00:00","description":"\u003Cp\u003EThis webinar will explain how to use Europe PMC to find relevant articles in your research field and locate the linked data containing facts and evidence to support your hypothesis.\u003C\/p\u003E\r\n\r\n\u003Cp\u003E\u003Ca href=\u0022https:\/\/europepmc.org\/\u0022\u003EEurope PMC\u003C\/a\u003E\u0026nbsp;is an open biomedical literature database including PubMed indexed articles, preprints, micropublications and more.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/finding-data-behind-research-articles-europe-pmc","keywords":["Europe PubMed Central (5507)","Literature (literature)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_0305","edam:http:\/\/edamontology.org\/topic_3489"],"audience":"\u003Cp\u003EThis webinar is aimed at scientists with an interest in learning more about the data-rich literature search tools provided by \u003Ca href=\u0022http:\/\/europepmc.org\/\u0022\u003EEurope PMC\u003C\/a\u003E.\u0026nbsp;No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Using the InterPro website in your research","start_date":"2020-05-13 15:30:00","endDate":"2020-05-13 16:30:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EThis is the second part of a webinar series on InterPro which is held between May 6th 2020 and May 20th 2020.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EInterPro is a database that helps users to understand the possible functions of proteins sequence by identifying what family it belongs to or what domains and motifs it contains.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003ETo deal with the growing volume of protein sequence data and an increasing demand to retrieve subsets of the data, the InterPro website has been entirely redesigned. It allows more flexibility and provides additional features to be used by the scientific community working on protein sequences. This webinar will guide you through searching and exploring the data available in the InterPro database and will show you how it can help finding data for your research.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/using-interpro-website-your-research","keywords":["InterPro (5519)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_1775","edam:http:\/\/edamontology.org\/topic_0078"],"audience":"\u003Cp dir=\u0022ltr\u0022\u003EThis webinar is aimed at scientists with an interest in learning more about the InterPro database.\u0026nbsp;No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Contributing to the UniProt Knowledgebase: how you can help","start_date":"2020-05-6 15:30:00","endDate":"2020-05-6 16:30:00","description":"\u003Cp\u003EThe webinar will present how the research community can contribute both literature references and annotation to the\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/www.uniprot.org\u0022\u003EUniProt database of protein sequence and function\u003C\/a\u003E.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EWe will provide an overview on UniProt and will focus on describing a new functionality which allows users to add publications and knowledge to protein entries. We will give a demo on how to link a publication to a UniProt entry, fill in the submission form and include functional annotation. UniProt uses ORCID, a unique identifier for each researcher, as a mechanism for user validation and credit for these contributions. In this webinar you will also learn how your domain knowledge contribution improves the resource for the general community, and how it can be used as an alternative metric of your research output. \u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will be presented by\u0026nbsp;Cecilia Arighi from the\u003Cstrong\u003E\u0026nbsp;\u003C\/strong\u003ECenter of Bioinformatics and Computational Biology, University of Delaware.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/contributing-uniprot-knowledgebase-how-you-can-help","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/data_3021"],"audience":"\u003Cp\u003EThis webinar is aimed at scientists, clinicians, biocurators and students interested in protein related research. No knowledge of programming is required.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Understanding InterPro families, domains and functions","start_date":"2020-05-6 15:00:00","endDate":"2020-05-6 16:00:00","description":"\u003Cp dir=\u0022ltr\u0022\u003EThis is the first part of a webinar series on InterPro which is held between 6 May - 20 May\u0026nbsp;2020.\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003EInterPro is a database that helps users to understand the possible functions of proteins sequence by identifying what family it belongs to or what domains and motifs it contains. InterPro provides the world\u2019s most comprehensive predictions by combining predictions from 13 member databases. This webinar defines the basic InterPro notions, concepts of protein classification and describes how InterPro ensures the accuracy of its data. This webinar also explains the different methodologies used by the InterPro member databases in their predictions and how we integrate them into the 5 different InterPro entry types: Homologous superfamily, family, domain, repeat and site. Finally, it presents some examples of different external resources using the InterPro database as an underlying resource.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/understanding-interpro-families-domains-and-functions","keywords":["InterPro (5519)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/format_3097","edam:http:\/\/edamontology.org\/topic_0623"],"audience":"\u003Cp dir=\u0022ltr\u0022\u003EThis webinar is aimed at scientists with an interest in learning more about the InterPro database.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp dir=\u0022ltr\u0022\u003ENo prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"UniProtKB: Increasing our understanding of neurodegenerative disorders through data curation","start_date":"2020-04-22 11:30:00","endDate":"2020-04-22 12:30:00","description":"\u003Cp\u003EThe webinar will give an overview on our ongoing curation efforts at the Universal Protein database UniProtKB on proteins involved in neurodegenerative disorders, including Alzheimer\u2019s disease, Parkinson\u2019s disease, Huntington\u2019s disease, and others.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EBy literature search and querying databases such as OMIM and Orphanet, we have identified over 200 neurodegenerative diseases with 165 associated proteins. We will focus our curation efforts on those proteins in order to help researchers to better understand the relationship between protein function and disease development.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe webinar will cover how we provide experimental information on molecular data of proteins involved in\u0026nbsp;neurodegenerative diseases\u0026nbsp;through literature curation. Curation\u0026nbsp;of molecular functions and interactions, as well as disease-associated variant positions, variant characterization and their impact on protein structure and function will be outlined.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EOur efforts to supplement human protein information with data from protein orthologs, such as mouse, rat and the fruit fly Drosophila melanogaster, which provide excellent model organisms for studying disease, will be shown.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EBy focusing our curation efforts on proteins involved in neurodegenerative diseases, we hope to provide the research community with a rich source of information on\u0026nbsp;proteins involved in these debilitating diseases and enable research activities such as data-driven research, translational and personal medicine. \u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/uniprotkb-increasing-our-understanding-neurodegenerative-disorders-through-data-curation","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_2007","edam:http:\/\/edamontology.org\/topic_3334","edam:http:\/\/edamontology.org\/topic_0219"],"audience":"\u003Cp\u003EThis webinar is aimed at computational and wet-lab scientists, with no prior knowledge of programming required. An undergraduate level understanding of protein biology will be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Using Europe PMC for effective literature research","start_date":"2020-04-8 14:00:00","endDate":"2020-04-8 15:00:00","description":"\u003Cp\u003EThis webinar\u0026nbsp;will explain how to find and access relevant scientific literature and show how you can follow the latest developments in your scientific field. It will cover searches by topic and author, searches for associated research data, as well as advanced options for building complex queries.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EEurope PMC (\u003Ca href=\u0022https:\/\/europepmc.org\/\u0022\u003Ehttps:\/\/europepmc.org\/\u003C\/a\u003E) is an open biomedical literature database including PubMed indexed articles, preprints, micropublications and more.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/using-europe-pmc-effective-literature-research","keywords":["Europe PubMed Central (5507)","Literature (literature)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Tom Hancocks","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"audience":"\u003Cp\u003EThis webinar is aimed at scientists who want to optimise their literature searches. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"UniProt COVID-19 website","start_date":"2020-04-2 15:00:00","endDate":"2020-04-2 16:00:00","description":"\u003Cp\u003EThe new\u0026nbsp;\u003Ca href=\u0022https:\/\/covid-19.uniprot.org\/\u0022\u003EUniProt portal\u003C\/a\u003E\u0026nbsp;for the SARS-CoV-2 coronavirus\u0026nbsp;and receptor protein entries provides the latest available pre-release UniProtKB data for the SARS-CoV-2 coronavirus and other entries relating to the COVID-19 outbreak. Please join us for a free webinar describing the use of the portal including\u0026nbsp;data release and updates.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/uniprot-covid-19-website","keywords":["UniProt: The Universal Protein Resource (5544)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Ajay Mishra","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"audience":"\u003Cp\u003EAny researcher interested in using the Portal.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Visualising your own data in the Ensembl genome browser","start_date":"2020-04-1 15:30:00","endDate":"2020-04-1 16:30:00","description":"\u003Cp\u003EThe Ensembl project (\u003Ca href=\u0022http:\/\/www.ensembl.org\/\u0022\u003Ewww.ensembl.org\u003C\/a\u003E) offers integrated genome, variation, gene regulation and comparative genomics data of mainly vertebrate genomes on an open access web browser platform. This webinar will introduce you to visualising your own datasets in the genome browser.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/visualising-your-own-data-ensembl-genome-browser","keywords":["Ensembl Genomes (5505)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Michal Szpak","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_3208"],"audience":"\u003Cp\u003EThis webinar is aimed at bioinformaticians and wet-lab biologists. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Exploring ChEMBL Data with the new ChEMBL Interface","start_date":"2020-03-11 15:30:00","endDate":"2020-03-11 16:30:00","description":"\u003Cp\u003EChEMBL is a manually curated open database of bioactivity data of molecules with drug-like properties. It enables users to identify data that relates chemical structural information to biological function and used to facilitate the discovery of new drugs.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThis webinar will highlight the data that is available in the ChEMBL database and how it can be accessed using the new ChEMBL web interface \/\/\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/chembl\/\u0022\u003Ewww.ebi.ac.uk\/chembl\/\u003C\/a\u003E. The webinar will include a walkthrough of several typical drug discovery use cases and will show how the data can be queried via the interface to identify this data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/exploring-chembl-data-new-chembl-interface-0","keywords":["ChEMBL: Bioactive data for drug discovery (5496)","Chemical biology (chemical-biology)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"audience":"\u003Cp\u003EThis webinar is for anyone with an interest in using ChEMBL. No prior skills are required.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Mol*: Improved molecular visualisation at PDBe","start_date":"2020-03-4 15:30:00","endDate":"2020-03-4 16:30:00","description":"\u003Cp\u003EThis webinar will focus on the use of the new online molecular visualisation tool, Mol*. We will show basic usage, observation of electron density maps and EM volumes, interrogation of ligand structures, and the visualisation of sequence annotations. We will also highlight the advantages to using Mol* in comparison to other tools and show the different ways the Mol* viewer is presented and accessed on PDBe\u0027s pages.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mol-improved-molecular-visualisation-pdbe","keywords":["Protein Data Bank in Europe (5526)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0130"],"audience":"\u003Cp\u003EThis webinar is for individuals with an interest in visualising molecular structures. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of protein biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"eQTL Catalogue: a compendium of uniformly processed human expression and splicing QTLs","start_date":"2020-02-12 15:30:00","endDate":"2020-02-12 16:30:00","description":"\u003Cp\u003EThe eQTL Catalogue is a new project aimed at accelerating the functional interpretation of human GWAS studies and the annotation of common variants through a comprehensive collection of gene expression and transcript splicing QTLs. Public datasets are thus collected then processed with a uniform pipeline to remove analysis artefacts and quality controlled, before being made freely available to all. In this webinar we will describe the data and most importantly how to access it. Already, the results of the eQTL Catalogue can be accessed via bulk download, API access and browsed on the Open Targets Genetics platform.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/eqtl-catalogue-compendium-uniformly-processed-human-expression-and-splicing-qtls","hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3517","edam:http:\/\/edamontology.org\/topic_0199"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about the eQTL Catalogue. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Searching and browsing scientific publications with the new Europe PMC","start_date":"2020-02-5 15:30:00","endDate":"2020-02-5 16:30:00","description":"\u003Cp\u003ELiterature search is an essential and routine task in scientific research. Following the release of the new\u0026nbsp;\u003Ca href=\u0022https:\/\/www.youtube.com\/watch?v=2jyY9_hnpB8\u0022\u003EEurope PMC\u0026nbsp;\u003C\/a\u003Ewebsite, this webinar will show you the new full-text searching and browsing features built to optimise the literature research. Learn how to find the most recent, most relevant and most cited articles in a topic of interest. Also, learn how to find and explore the enhanced content available in Europe PMC.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/searching-and-browsing-scientific-publications-new-europe-pmc","keywords":["Europe PubMed Central (5507)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_0305"],"audience":"\u003Cp\u003EThis webinar is aimed at life science scientists\u0026nbsp;who are interested in optimising their literature search skills. No prior knowledge of bioinformatics is required.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Single cell RNA-seq analysis using a Galaxy interface","start_date":"2019-12-11 15:30:00","endDate":"2019-12-11 16:30:00","description":"\u003Cp\u003EIn this webinar, we will look at a Galaxy interface for single cell analysis. Specifically, we will run Scanpy (which would otherwise require Python programming skills) to analyse a Drop-seq dataset located in EMBL-EBI\u0027s Single Cell Expression Atlas.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/single-cell-rna-seq-analysis-using-galaxy-interface","keywords":["Train online (5640)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3170"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals interested in single cell RNA-seq analysis. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"PDBe-KB Aggregated Views: Presenting PDB data in a different context","start_date":"2019-11-27 15:30:00","endDate":"2019-11-27 16:30:00","description":"\u003Cp\u003EOur understanding of biological function can be advanced by the knowledge of biomolecular structures. Yet, it requires compiling data from individual entries in the Protein Data Bank (PDB), where each entry may represent only a segment of a complete system and may lack biological context.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/pdbe\/pdbe-kb\/\u0022\u003EProtein Data Bank in Europe - Knowledge Base\u003C\/a\u003E\u0026nbsp;(PDBe-KB) is a community-driven, integrated resource whose goal is to place macromolecular structures in their biological context and thus promote fundamental and translational research. PDBe-KB combines residue-level structural data with functional annotations and sequence information in a highly interconnected, complex graph database, on the scale of 1 billion nodes and 4 billion edges. PDBe-KB infrastructure allows compilation of data from multiple PDB entries into a context-specific view of the data that is made available via an extensive set of API endpoints and modular web components.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar presents an updated version of the first, protein-specific aggregated view that summarises all the data from the PDB and associated functional annotations from PDBe-KB partner resources in a user-friendly and accessible web-based view, providing a novel way to navigate structural data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/pdbe-kb-aggregated-views-presenting-pdb-data-different-context-0","keywords":["Protein Data Bank in Europe (5526)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0123"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals working on protein biology. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Submitting metagenomic data to ENA","start_date":"2019-11-21 15:30:00","endDate":"2019-11-21 16:30:00","description":"\u003Cp\u003EIn order to have your metagenomic data analysed by MGnify your sequence data has to be captured by the European Nucleotide Archive\u0026nbsp;(ENA). ENA is a comprehensive database of nucleotide sequences, providing information on raw sequencing data, sequence assemblies and functional annotation.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will discuss how you can submit metagenomic studies to ENA, make sure they are well annotated, and help people understand your work. It will also cover Webin-CLI, the newly developed Webin Command Line Submission tool. The webinar is presented by Sam\u0026nbsp;Holt who works for ENA.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/submitting-metagenomic-data-ena","keywords":["DNA \u0026 RNA (dna-rna)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3837","edam:http:\/\/edamontology.org\/format_1207","edam:http:\/\/edamontology.org\/operation_3672","edam:http:\/\/edamontology.org\/topic_3168"],"audience":"\u003Cp\u003EThis webinar is aimed at life scientists who are working in the field of metagenomics and who want to learn more about how submitting their data to ENA.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Life cell by cell: Introduction to Single Cell Expression Atlas","start_date":"2019-11-13 15:30:00","endDate":"2019-11-13 16:30:00","description":"\u003Cp\u003EExplore gene expression profiles across various species and conditions at single cell resolution.\u003C\/p\u003E\r\n\r\n\u003Cp\u003ESingle Cell Expression Atlas (SCEA) is an open resource committed to making the information from single cell sequencing datasets readily accessible to the research community and beyond. At SCEA we accumulate, curate and re-analyse available raw single-cell sequencing data from multiple species and across experimental conditions to make them cross-comparable and we present the analysis results in a user-friendly interface for public consumption. This allows researchers to gain a quick insight into the expression pattern of their gene of interest at the level of individual cells across different species from human to Saccharomyces.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EAt SCEA we aim to keep pace with the rapidly growing single cell transcriptomics research and to make the knowledge thus obtained truly open and widely available so that it can serve as basis for further studies.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe webinar will provide a quick overview of:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EDifferent single cell sequencing methods\u003C\/li\u003E\r\n\t\u003Cli\u003EVarious ways of searching SCEA\u003C\/li\u003E\r\n\t\u003Cli\u003EHow to filter and interpret the analysis results on the experiment page\u003C\/li\u003E\r\n\t\u003Cli\u003EAdditional features and resources available on the experiment page\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/life-cell-cell-introduction-single-cell-expression-atlas","keywords":["Expression Atlas (5511)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0203"],"audience":"\u003Cp\u003EThis webinar is for individuals who wish to learn more about\u0026nbsp;Single Cell Expression Atlas. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EurOPDX Data Portal: a repository of patient-derived xenograft models","start_date":"2019-10-23 15:30:00","endDate":"2019-10-23 16:30:00","description":"\u003Cp\u003EThe new\u0026nbsp;\u003Ca href=\u0022https:\/\/www.europdx.eu\/\u0022\u003EEurOPDX Research Infrastructure (RI)\u003C\/a\u003E, funded by the European Union Horizon 2020 programme, aims to improve cancer drug development success rates through the enablement of collaborative cancer research using patient-derived xenograft (PDX) models. In particular, we are developing efficient and user-friendly IT tools to optimise access to, and data searching of the collection of PDX models and their clinical, molecular and pharmacological annotations. We will be presenting the EurOPDX RI and the possibilities of access to PDX models, as well as the functionalities of the\u0026nbsp;\u003Ca href=\u0022https:\/\/dataportal.europdx.eu\/\u0022\u003EEurOPDX Data Portal\u003C\/a\u003E, with the objective to support future applicants to our PDX access grant programme.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/europdx-data-portal-repository-patient-derived-xenograft-models","hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3336"],"audience":"\u003Cp\u003EThis webinar is for individuals who are working with patient-derived xenograft models in the context of cancer drug discovery. No prior knowledge of bioinformatics is required but an undergraduate-level knowledge of biology is recommended. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Explore the known protein space through UniProt Archive and Clusters","start_date":"2019-10-16 15:30:00","endDate":"2019-10-16 16:30:00","description":"\u003Cp\u003EUniProt Archive (UniParc) is the most comprehensive, non-redundant protein sequence database available. Its protein sequences are retrieved from predominant, publicly accessible resources. To avoid redundancy, each unique sequence is stored only once with a stable protein identifier. As a result, performing a sequence search against UniParc is equivalent to performing the same search against all databases cross-referenced by UniParc.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nUniProt Reference Clusters (UniRef) provides clustered sets of sequences from the UniProt Knowledgebase (UniProtKB) and selected UniParc records to obtain complete coverage of sequence space at several resolutions while hiding redundant sequences. The reduced redundancy increases the speed of similarity searches and improves detection of distant relationships.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/explore-known-protein-space-through-uniprot-archive-and-clusters","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_2976"],"audience":"\u003Cp\u003EThis webinar is for individuals who wish to learn more about UniParc. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Integrating publications into bioinformatics analysis","start_date":"2019-10-2 15:30:00","endDate":"2019-10-2 16:30:00","description":"\u003Cp\u003EResearch literature contains a wealth of information that can be extracted at scale using text-mining technologies. To make text-mining data available to a wider group of researchers, the\u0026nbsp;publications database, Europe PMC, provides access to millions of text-mined annotations, such as genes and proteins, metabolites, species, mutations, phosphorylations, interactions, associations, and many more.\u0026nbsp;\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThis webinar will demonstrate how to access text-mined literature evidence programmatically, and how to supplement it with bibliographic information for advanced use cases. Two of such use cases, mapping of tropical disease research by author affiliation geoparsing and comparison of applicability of analytical chemistry techniques, will be introduced by invited speaker, Dr. Magnus Palmblad.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/integrating-publications-bioinformatics-analysis","keywords":["Europe PubMed Central (5507)","Literature (literature)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_3778","edam:http:\/\/edamontology.org\/operation_0306"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn about accessing text-mined literature evidence programmatically. No prior knowledge of bioinformatics is required, but\u0026nbsp;undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Ensembl gene annotation for clinical genomics","start_date":"2019-09-18 15:30:00","endDate":"2019-09-18 16:30:00","description":"\u003Cp\u003EEnsembl provides the GENCODE gene annotation that is used by major sequencing projects, such as gnomAD, GTEx and ENCODE. In this webinar you will learn about how the GENCODE genes are annotated and how you can best use them to report the locations of clinically relevant variants. We will also cover our latest project, collaborating with RefSeq to create the MANE (Matched Annotation from NCBI and EBI) transcript set, to ensure consistent variant reporting across databases.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ensembl-gene-annotation-clinical-genomics","keywords":["Ensembl (5504)","Genes"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_0927","edam:http:\/\/edamontology.org\/data_3148","edam:http:\/\/edamontology.org\/data_1098","edam:http:\/\/edamontology.org\/format_2031"],"audience":"\u003Cp\u003EThis webinar is individuals working on clinical genomics who wish to learn more about the annotating and reporting variants. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of genetic variation\u0026nbsp;would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Genome3D annotations in InterPro","start_date":"2019-09-11 15:30:00","endDate":"2019-09-11 16:30:00","description":"\u003Cp\u003EGenome3D provides consensus structural annotations and 3D models for sequences from ten model organisms, including human. These data are generated by several UK-based resources that together form the Genome3D consortium: SCOP, CATH, SUPERFAMILY, Gene3D, FUGUE, pDomTHREADER and PHYRE. InterPro, meanwhile, provides functional analysis of proteins by classifying them into homologous superfamilies and families, and by predicting domains, repeats and important sites, based on data from 14 member databases.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar presents the new InterPro entry type, Homologous superfamily, as well as describing domain and structure predictions from Genome3D annotations, and how they are integrated in InterPro.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/genome3d-annotations-interpro","keywords":["InterPro (5519)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_1460","edam:http:\/\/edamontology.org\/topic_0166","edam:http:\/\/edamontology.org\/topic_2814"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals working with variation data who wish to learn about Genome3D and\u0026nbsp;InterPro\u0027s\u0026nbsp;Homologous superfamily. No prior knowledge of bioinformatics is required, but\u0026nbsp;undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Variant submission and accessioning at the European Variation Archive","start_date":"2019-09-4 15:30:00","endDate":"2019-09-4 16:30:00","description":"\u003Cp\u003EThe\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/eva\u0022\u003EEuropean Variation Archive\u003C\/a\u003E\u0026nbsp;(EVA) is a primary open repository for archiving, accessioning, and distributing genome variation including single nucleotide variants, short insertions and deletions (indels), and larger structural variants (SVs) in any species. The EVA is in the process of releasing the first dbSNP data release which consists of RS ID-containing VCF files for each non-human species available in dbSNP. This webinar will provide an overview of the European Variation Archive including data ingestion, consumption, and how you can access and utilise dbSNP RS release batch files.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/variant-submission-and-accessioning-european-variation-archive","keywords":["European Variation Archive (5971)","genes"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_3197","edam:http:\/\/edamontology.org\/operation_3227","edam:http:\/\/edamontology.org\/format_3016"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals working with variation data who wish to learn about submitting and accessing data in the EVA. No prior knowledge of bioinformatics is required, but\u0026nbsp;undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"BioStudies database: aggregating all outputs of a life sciences study","start_date":"2019-07-17 15:30:00","endDate":"2019-07-17 16:30:00","description":"\u003Cp\u003EThe goal of the BioStudies database is to facilitate transparency and reproducibility of research by aggregating all the outputs of a study (a \u2018data package\u2019) in a single place. A data package consists of the overall biological study description (metadata), links to data generated in this study in key community databases at EMBL-EBI and elsewhere, as well as \u201corphan data\u201d such as supplemental data. The database can accept a wide range of types of studies described via a simple format and does not impose minimum requirements outside those agreed by the respective community.\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nIn this webinar we will introduce the basic principles of BioStudies,\u0026nbsp;explore data access and data deposition interfaces, as well as briefly consider some more advanced topics such as use of BioStudies for data sharing in an ongoing project.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/biostudies-database-aggregating-all-outputs-life-sciences-study","keywords":["BioStudies Database (5494)","Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_2422","edam:http:\/\/edamontology.org\/topic_3068","edam:http:\/\/edamontology.org\/topic_3678"],"audience":"\u003Cp\u003ENo prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Annotate your proteins with the UniProt Functional Annotation system UniFire","start_date":"2019-07-10 15:30:00","endDate":"2019-07-10 16:30:00","description":"\u003Cp\u003EUniProt is a high quality, comprehensive protein resource. Next to expert curation, one of the core activities at UniProt is to develop computational methods for the functional annotation of protein sequences. In this webinar, we will be introducing our functional annotation system UniFire that can be used by the community to share and run rule-based automatic annotation systems to add functional information to proteins.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/annotate-your-proteins-uniprot-functional-annotation-system-unifire","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/operation_1777"],"audience":"\u003Cp\u003ENo prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"How to share text mining results in biology","start_date":"2019-07-9 15:30:00","endDate":"2019-07-9 16:30:00","description":"\u003Cp\u003EThough text mining becomes more widespread in biology, an average researcher can rarely use it to their advantage. In this webinar\u0026nbsp;\u003Ca href=\u0022https:\/\/europepmc.org\/\u0022\u003EEurope PMC\u003C\/a\u003E\u0026nbsp;presents a tool to easily share annotated biological entities and relations with the research community. Europe PMC\u0026nbsp;\u003Ca href=\u0022https:\/\/europepmc.org\/AnnotationsSubmission\u0022\u003EAnnotation Submission System\u003C\/a\u003E\u0026nbsp;allows text miners and curators in the field of life sciences to make their results available to the public. Annotated concepts can be browsed and searched for both on Europe PMC website as a part of SciLite tool and Advanced search, as well as via the\u0026nbsp;\u003Ca href=\u0022https:\/\/europepmc.org\/AnnotationsApi\u0022\u003EAnnotations API\u003C\/a\u003E.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/how-share-text-mining-results-biology","keywords":["Europe PubMed Central (5507)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_0306","edam:http:\/\/edamontology.org\/topic_3068","edam:http:\/\/edamontology.org\/operation_0305"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about sharing and reusing results of biomedical text-mining. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Explore gene expression across species with Expression Atlas","start_date":"2019-06-26 15:30:00","endDate":"2019-06-26 16:30:00","description":"\u003Cp\u003EExpression Atlas is an open resource that incorporates high quality gene expression data from ArrayExpress as well as other data archives and sources. Our mission is to provide the scientific community with a tool that allows users to visualise the abundance and localisation of gene and protein expression data across over 60 different species and thousands of different biological conditions. Expression Atlas aims to help answer questions such as \u0022where is my favourite gene expressed?\u0022 or \u0022how does expression of my favourite gene change in response to disease?\u0022\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe webinar will guide users through:\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EIntroduction to baseline data which investigate gene expression under normal conditions (without experimental interference)\u003C\/li\u003E\r\n\t\u003Cli\u003EIntroduction to differential data which explore gene expression changes in response to perturbations such as disease or compound treatment\u003C\/li\u003E\r\n\t\u003Cli\u003ESearching for specific genes and conditions\u003C\/li\u003E\r\n\t\u003Cli\u003EAdvanced features: visualising gene information within the Ensembl genome browser; identifying similarly expressed genes to your gene of interest; view variable gene expression and transcript information\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/explore-gene-expression-across-species-expression-atlas","keywords":["Expression Atlas (5511)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_0928","edam:http:\/\/edamontology.org\/data_3568","edam:http:\/\/edamontology.org\/operation_2495"],"audience":"\u003Cp\u003EThis webinar is aimed at those with an interest in gene expression data. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Genomic features that regulate gene expression, with Ensembl","start_date":"2019-06-12 15:30:00","endDate":"2019-06-12 16:30:00","description":"\u003Cp\u003EGene expression is controlled by a complicated network of transcription factors and repressors, interacting with genomic features such as promoters and enhancers, dependant on epigenetic marks at those loci. Ensembl provides access to epigenomic data on histone modifications and protein binding across the genome, integrated with data on genes and genetic variation.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EJoin Ensembl to investigate a genomic region which controls gene expression, determine its activity in different cell types and view the epigenomic markers at that locus, plus see how to access these data in bulk.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/genomic-features-regulate-gene-expression-ensembl","keywords":["Ensembl (5504)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0203","edam:http:\/\/edamontology.org\/topic_3295","edam:http:\/\/edamontology.org\/topic_3173","edam:http:\/\/edamontology.org\/data_2610"],"audience":"\u003Cp\u003ENo prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Enzyme Portal","start_date":"2019-05-29 15:30:00","endDate":"2019-05-29 16:30:00","description":"\u003Cp\u003E\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/enzymeportal\/\u0022\u003EEnzyme Portal\u003C\/a\u003E\u0026nbsp;is a freely available resource to find and explore enzyme-related information. It integrates relevant enzyme data for a wide range of species from various resources such as UniProt, PDB, Reactome or CHEMBL.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will provide a practical overview of the type of information that the Enzyme Portal\u0026nbsp; provides for enzymes. We will show, using various examples, how to search the Portal for specific enzymes according to the reactions they catalyse, the pathways or the diseases they are involved in.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/enzyme-portal","keywords":["Enzyme Portal (5506)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0821","edam:http:\/\/edamontology.org\/topic_0821"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about enzymes. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"UniProt and Alzheimer\u0027s Disease: Linking molecular defects to disease phenotype","start_date":"2019-05-14 15:30:00","endDate":"2019-05-14 16:30:00","description":"\u003Cp\u003EThis webinar will cover ongoing curation project at UniProt on proteins involved in Alzheimer\u0027s Disease.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EWe have identified more than 300 proteins, by text mining and from input by experts in the field, to be associated with AD. Using manual curation, information from peer-reviewed literature has been annotated on molecular function and involvement in disease, including disease-associated variant positions and variant characterisation.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EBy focusing our curation efforts on proteins involved in AD, we hope to shed light on the mechanisms leading to this devastating disease. We focus on a thorough review of available information on sequence variants and associated AD information, as well as normal protein function of proteins associated with the disease. The information on variants together with variant functional description, protein molecular function, structural data and protein-protein interaction should help researchers in the field of neurodegeneration, clinicians and biomedical researchers to gain a global view on the relation between variant and disease and help elucidating disease mechanism.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/uniprot-and-alzheimers-disease-linking-molecular-defects-disease-phenotype","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/data_3668","edam:http:\/\/edamontology.org\/operation_0306","edam:http:\/\/edamontology.org\/topic_0219"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about using Uniprot. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Enzymes in UniProt","start_date":"2019-05-1 15:30:00","endDate":"2019-05-1 16:30:00","description":"\u003Cp\u003EThis webinar will provide a practical overview of the type of information the protein database UniProt offers for enzymes and how to access it. We will introduce the new enhanced enzyme annotation based on Rhea, a comprehensive expert-curated database of biochemical reactions that uses the ChEBI ontology to describe reaction participants, their chemical structures, and chemical transformations.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this webinar, we will show how this new feature forms the basis of a new search. Ultimately, this information will help users to integrate and analyse metabolomic data, annotate metabolic networks and models, or mine reaction data to study enzyme evolution and predict new pathways for drug production or bioremediation.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/enzymes-uniprot","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0821","edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/operation_0226"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about enzymes in Uniprot. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"European Nucleotide Archive: An introduction","start_date":"2019-04-3 15:30:00","endDate":"2019-04-3 16:30:00","description":"\u003Cp\u003EThe European Nucleotide Archive (ENA) provides a comprehensive record of the world\u0027s nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this webinar, get acquainted with what the European Nucleotide Archive is and how our services can support your work. Learn about how to submit your data to our open-access archive, or how to search interesting data submitted by others.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/european-nucleotide-archive-introduction","hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Anna Swan","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/format_1207","edam:http:\/\/edamontology.org\/topic_3168"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about ENA. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"An introduction to WormBase ParaSite resources","start_date":"2019-03-20 15:30:00","endDate":"2019-03-20 16:30:00","description":"\u003Cp\u003E\u003Ca href=\u0022https:\/\/parasite.wormbase.org\/index.html\u0022\u003EWormBase ParaSite\u003C\/a\u003E\u0026nbsp;is a sub-portal of the main WormBase website and is designed for researchers working on parasitic worm genomics. It provides genome sequence, genome browsers, semi-automatic annotation and comparative genomics data for approximately one hundred species, plus a number of other tools.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this webinar we will cover:\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cul\u003E\r\n\t\u003Cli\u003EIntroduction to WormBase ParaSite data\u0026nbsp;\u003C\/li\u003E\r\n\t\u003Cli\u003EAccessing data via the species and gene pages\u0026nbsp;\u003C\/li\u003E\r\n\t\u003Cli\u003EUsing the genome browsers\u0026nbsp;\u003C\/li\u003E\r\n\t\u003Cli\u003EData mining with BioMart\u003C\/li\u003E\r\n\u003C\/ul\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/introduction-wormbase-parasite-resources","keywords":["WormBase (5547)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_2113","edam:http:\/\/edamontology.org\/topic_0622","edam:http:\/\/edamontology.org\/operation_0362"],"audience":"\u003Cp\u003EThis webinar is for researchers engaged in parasitic worm (flatworm and nematode) genomics.\u0026nbsp;No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology and parasitology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Wheat resources in Ensembl Plants","start_date":"2019-02-20 15:30:00","endDate":"2019-02-20 16:30:00","description":"\u003Cp\u003EThe wheat genome is large, complicated and arguably the most important genome of all in terms of food security.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this webinar, join\u0026nbsp;\u003Ca href=\u0022http:\/\/plants.ensembl.org\/index.html\u0022\u003EEnsembl Plants\u003C\/a\u003E\u0026nbsp;to learn more about where the latest IWGSC genome came from, how to explore homoeologues in wheat, along with their orthologues in the progenitor species and understand genetic variation in wheat.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/wheat-resources-ensembl-plants","keywords":["Ensembl (5504)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_2610","edam:http:\/\/edamontology.org\/topic_0780","edam:http:\/\/edamontology.org\/operation_3918"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about using Ensembl to explore wheat genes. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"HMMER: Fast and sensitive sequence similarity searches","start_date":"2018-11-14 16:00:00","endDate":"2018-11-14 17:00:00","description":"\u003Cp\u003EA cornerstone of modern molecular biology is the electronic transfer of annotations form a few experimentally characterised sequences to the vast number being determined from DNA modern sequencing technologies. In general, sequences that are evolutionarily related share some degree of similarity, and sequence-search algorithms use this principle to identify homologs. The requirement for a fast and sensitive sequence search method led to the development of the HMMER software and associated website housed at EMBL-EBI, which in the latest version, uses a combination of sophisticated acceleration heuristics and mathematical and computational optimisations to enable the use of profile hidden Markov models (HMMs) for sequence analysis.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this webinar, we\u0026nbsp;will cover some of the basics about the HMMER algorithm and the use of the HMMER via the website. \u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/hmmer-fast-and-sensitive-sequence-similarity-searches","keywords":["HMMER - protein homology search (6059)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_0078","edam:http:\/\/edamontology.org\/topic_0080","edam:http:\/\/edamontology.org\/data_0857"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about the HMMER. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Bioinformatics sequence analysis web services with Job Dispatcher","start_date":"2018-11-7 15:00:00","endDate":"2018-11-7 16:00:00","description":"\u003Cp\u003EThe EMBL-EBI Job Dispatcher framework (https:\/\/www.ebi.ac.uk\/services) provides free access to several core Bioinformatics tools and related data, via the web or programmatically via Web Services APIs. In this webinar, we will give an overview of the Web Interface and RESTful API. We will then explore how to use our Sample Clients to perform various bioinformatics analysis, and how we can leverage CWL to run analysis workflows.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/bioinformatics-sequence-analysis-web-services-job-dispatcher","keywords":["Web Services (5596)","Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3372","edam:http:\/\/edamontology.org\/operation_2409"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals at all levels of expertise, particularly those interested in learning how to use our Web Services programmatically.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"EBI Search as a service","start_date":"2018-10-31 15:00:00","endDate":"2018-10-31 16:00:00","description":"\u003Cp\u003EEBI Search is a scalable text search engine that provides easy and uniform access to the biological data resources hosted at the European Bioinformatics Institute (EMBL-EBI).\u003C\/p\u003E\r\n\r\n\u003Cp\u003EIn this webinar we will give you an overview about how to access the services through the Web interface as well as programmatically using the RESTful Web Services. We will also show you some examples of how it is used in third party projects (Search as a service) and sample codes.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/ebi-search-service","keywords":["EBI Search (11228)","Web Services (5596)","Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_2422","edam:http:\/\/edamontology.org\/operation_2421"],"audience":"\u003Cp\u003EThis\u0026nbsp;webinar is aimed at individuals at all levels of expertise, particularly those\u0026nbsp;interested in learning how to use our Web Services programmatically.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"QuickGO: Gene ontology annotation","start_date":"2018-10-10 16:00:00","endDate":"2018-10-10 17:00:00","description":"\u003Cp\u003EThis webinar\u0026nbsp;focuses on how to use\u0026nbsp;\u003Ca href=\u0022https:\/\/www.ebi.ac.uk\/QuickGO\/\u0022\u003EQuickGO\u003C\/a\u003E, our online browser for viewing the gene ontology (GO) and GO annotations. We will be reviewing what GO is, how to read an annotation, and how you can use QuickGO to find the information youneed.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe Gene Ontology Annotation (GOA) project provides high-quality functional annotations to gene products, such as proteins, protein complexes and non-coding RNAs. Currently our database contains over 390 million annotations to 60 million distinct gene products from almost 725,000 taxa. It is therefore critical to be able to easily and quickly mine and visualise the available information.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/quickgo-gene-ontology-annotation","keywords":["QuickGO (5485)","Ontologies (ontologies)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/data_0582","edam:http:\/\/edamontology.org\/data_2223","edam:http:\/\/edamontology.org\/data_3754"],"audience":"\u003Cp\u003EThis webinar is aimed at anyone who wants to learn more about gene\u0026nbsp;ontology annotation. No prior knowledge of bioinformatics is\u0026nbsp;required, but an undergraduate level knowledge of biology would be\u0026nbsp;useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Data visualisation 101: A practical introduction to designing scientific figures","start_date":"2018-09-26 16:00:00","endDate":"2018-09-26 17:00:00","description":"\u003Cp\u003EIn this webinar we will go through the basic principles of designing scientific figures to communicate our research findings. We will focus on how we can utilise colour effectively and help our audience make accurate quantitative judgements by taking advantage of fundamental principles of human perception. We will also discuss strategies for visualising complex datasets.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThe webinar is based on\u0026nbsp;\u003Ca href=\u0022http:\/\/blogs.nature.com\/methagora\/2013\/07\/data-visualization-points-of-view.html\u0022\u003Ethe articles in data visualisation which were published in the Points of View column in Nature Methods\u003C\/a\u003E\u0026nbsp;with additional material from publications by\u0026nbsp;\u003Ca href=\u0022https:\/\/www.edwardtufte.com\/tufte\/books_vdqi\u0022\u003EEdward Tufte\u003C\/a\u003E,\u0026nbsp;\u003Ca href=\u0022http:\/\/www.cs.ubc.ca\/~tmm\/vadbook\/\u0022\u003ETamara Munzner\u003C\/a\u003E\u0026nbsp;and other leading researchers on data visualisation.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/data-visualisation-101-practical-introduction-designing-scientific-figures","keywords":["Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_0337"],"audience":"\u003Cp\u003EThis webinar is aimed at scientists\u0026nbsp;who wish to learn more about the principles of data visualisation. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Mouse strains in Ensembl","start_date":"2018-07-25 16:00:00","endDate":"2018-07-25 17:00:00","description":"\u003Cp\u003EEnsembl not only provides up-to-date annotation of the mouse reference genome assembly, but also allows you to browse the genomes of 16 other mouse strains.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will consist of a short presentation that will describe the origin of the data, followed by a demonstration on how to use the Ensembl web browser to browse and compare data between the different strains, looking specifically at homology and variation data.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/mouse-strains-ensembl","keywords":["Ensembl (5504)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Melissa Burke","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3053","edam:http:\/\/edamontology.org\/topic_0622","edam:http:\/\/edamontology.org\/topic_3679"],"audience":"\u003Cp\u003EThis webinar is for scientists with an interest in mouse strains, genomes and genotypes.\u0026nbsp;No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Hands-on on protein function prediction with machine learning and interactive analytics","start_date":"2018-05-11 16:00:00","endDate":"2018-05-11 17:00:00","description":"\u003Cp\u003EUnderstanding protein functions is crucial to unlocking the value of genomic data for biomedical research and innovation. Delivering personalised health and precision medicine requires a detailed understanding of the consequences of sequence variants in proteins and their impact on phenotype. The widening gap between known proteins and their functions has encouraged the development of methods to automatically infer annotations. Artificial intelligence and machine learning hold a large repertoire of algorithms and methodologies to discover and infer prediction models. Coupled with the new big data technologies for interactive analytics and data transformation, the AI\/ML methods represent valuable assets that could enhance the discovery of protein functions.\u0026nbsp;\u003Cbr \/\u003E\r\n\u003Cbr \/\u003E\r\nThis tutorial will help you understanding how to use Spark and Interactive Analytics to make sense of protein data and build machine learning models to infer their functions.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/hands-protein-function-prediction-machine-learning-and-interactive-analytics","keywords":["UniProt: The Universal Protein Resource (5544)","Proteins (proteins)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Sangya Pundir","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3474","edam:http:\/\/edamontology.org\/operation_1777","edam:http:\/\/edamontology.org\/topic_1775"],"audience":"\u003Cp\u003EScientists and bioinformaticians with an interest in protein functions, machine learning and modelling.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"Analysing linkage disequilibrium with Ensembl","start_date":"2018-03-21 16:00:00","endDate":"2018-03-21 17:00:00","description":"\u003Cp\u003EThe \u003Ca href=\u0022www.ensembl.org\u0022\u003EEnsembl project\u003C\/a\u003E offers integrated genome, variation, gene regulation and comparative genomics data of mainly vertebrate genomes on an open access web browser platform.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar will introduce you to the analysis of Linkage Disequilibrium (LD) between variants with Ensembl. We will look at different ways to explore and visualise LD in the Ensembl genome browser website. We will discuss the new \u003Ca href=\u0022https:\/\/www.ensembl.org\/Homo_sapiens\/Tools\/LD?db=core\u0022\u003ELD Calculator tool\u003C\/a\u003E\u0026nbsp;which has been released with Ensembl 91 and show how to use it.\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/analysing-linkage-disequilibrium-ensembl","keywords":["Ensembl (5504)","Gene expression (gene-expression)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Astrid Gall","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/topic_3053","edam:http:\/\/edamontology.org\/data_1033","edam:http:\/\/edamontology.org\/operation_0488"],"audience":"\u003Cp\u003EThis webinar is aimed at individuals who wish to learn more about analysing LD with Ensembl. No prior knowledge of bioinformatics is required, but an understanding of undergraduate level genetics would be useful.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"},{"@context":"http:\/\/schema.org","@type":"Event","name":"User experience design for more user-friendly applications","start_date":"2017-06-27 14:30:00","endDate":"2017-06-27 15:30:00","description":"\u003Cp\u003EInterested in learning how User Experience (UX) design can help you meet your goals? What are the quick wins for knowing your users, designing with your team and getting feedback on your designs?\u0026nbsp;This webinar is for you if you are involved in maintaining or designing a website, tool or app or alternatively, are in a role where it is key to understand your user (e.g. training or capacity building).\u003C\/p\u003E\r\n\r\n\u003Cp\u003EUser experience design places the user at the centre of development. Our speakers will discuss tools to profile the user (e.g. personas), to create a user journey, and using sketches and prototypes for usability testing.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EWe will focus on lean UX tools, and will discuss quick wins for knowing your users, designing with your team and getting feedback on your designs.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EDuring this webinar we introduce you to UX design using the\u0026nbsp;\u003Ca href=\u0022https:\/\/targetvalidation.org\/\u0022\u003EOpen Targets platform\u003C\/a\u003E\u0026nbsp;as a case study, showing how UX can be applied and demonstrate how it can make a positive difference.\u003C\/p\u003E\r\n\r\n\u003Cp\u003EThis webinar was given by Michele Ide-Smith and Nikiforos Karamanis and is a joint webinar between EMBL-EBI and\u0026nbsp;\u003Ca href=\u0022http:\/\/www.corbel-project.eu\/home.html\u0022\u003ECORBEL\u003C\/a\u003E.\u0026nbsp;\u003C\/p\u003E\r\n\r\n\u003Cp\u003ECORBEL is an initiative of eleven new biological and medical research infrastructures (BMS RIs), which together will create a platform for harmonised user access to biological and medical technologies, biological samples and data services required by cutting-edge biomedical research. CORBEL will boost the efficiency, productivity and impact of European biomedical research.\u0026nbsp;\u003C\/p\u003E\r\n","url":"https:\/\/www.ebi.ac.uk\/training\/events\/user-experience-design-more-user-friendly-applications","keywords":["Cross domain (cross-domain)"],"hostInstitution":{"@type":"Organization","name":"EMBL-EBI","url":"https:\/\/www.ebi.ac.uk","email":""},"contact":{"@type":"Person","name":"Vera Matser","url":"","email":"[email protected]"},"location":{"@type":"Online","name":"","address":{"@type":"","streetAddress":"","addressCountry":"","addressRegion":"","postalCode":""}},"topic":["edam:http:\/\/edamontology.org\/operation_0337","edam:http:\/\/edamontology.org\/topic_3572"],"audience":"\u003Cp\u003EThis webinar is for those who are in a role where it is key to understand your user. The target audience for this webinar is academic researchers,\u0026nbsp;technical operators\/service providers of\u0026nbsp;biological and medical research infrastructures. No prior knowledge of user experience design is required.\u003C\/p\u003E\r\n","eventType":"Webinar","eligibility":"First come, first served","maximumAttendeeCapacity":"200","contentHub_type":"Webinar"}]