Created
December 9, 2014 19:38
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def Integer(obj): | |
if obj["min"] < obj["value"] < obj["max"]: | |
return True | |
else: | |
raise ValueError("value out of range") | |
min_tile_size = {"type": Integer, | |
"min": 10, | |
"max": 20, | |
"value": 15, | |
"where": ["target", "search"]} | |
max_awful_primers = {"type": Integer, | |
"min": 5, | |
"max": 15, | |
"where": ["pair_filter"], | |
"help": "Maximum number of completely, atrocious, most awful primers to include"} | |
parameters = [min_tile_size] | |
for param in parameters: | |
if param["type"](param): | |
return True | |
else: | |
return False | |
design_relationships = | |
rnafusion_relationships = [ (check_blah, (arg1, arg2), msg) ] | |
for function, args, msg in itertools.chain(design_relationships, rnafusion_relationships): | |
if not function(*args): | |
blah += msg | |
return blah | |
class RNAFusion(Params): | |
def __init__(self, *kwargs): | |
self.val = kwargs.get('name', None)up | |
data_objects = { | |
'min_tile_size': {}, | |
} | |
relationships = [ check_lte, (min_tile_size, max_tile_size, "Minimum tile size must be less than or equal to maximum tile size", ), | |
check_between, (max_awful_primers, "Awful primers must be between {}, {}") ] | |
def get_dict(group=None): | |
if group is not None: | |
def validate(self): | |
validate_fields | |
parent_class_validate(relationships) | |
# Now I'm in the backend | |
>>> target_params = LoadJson("/path/to/json", "target") | |
ValidationError("Not valid search") | |
>>> params.min_tile_size | |
38 | |
>>> params["min_tile_size"] | |
38 | |
>>> params.get_dict('target') | |
{'min_tile_size': 38, | |
...} | |
>>> params.get_dict_searching() | |
{'primer_size_min': 18, | |
...} | |
>>> search_params = LoadJson("/path/to/json", "search")5 | |
# In the frontend | |
>>> params = RNAFusion() | |
>>> params.min_tile_size = "A" | |
ValueError("Parameter not correct") | |
>>> msg = params.bulk_set({}) | |
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