jFed r1633 issue

gistfile1.txt

$ java -jar jFed-experimenter-GUI.jar 

[Fatal Error] :6:8: XML document structures must start and end within the same entity.
12:14:55.156 [JavaFX Application Thread] ERROR b.i.i.j.e.ui.code.XmlCodeView - Error while trying to format XML
org.xml.sax.SAXParseException: XML document structures must start and end within the same entity.
	at org.apache.xerces.parsers.DOMParser.parse(Unknown Source) ~[jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source) ~[jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.experimenter_gui.ui.code.XmlCodeView.formatXmlCode(XmlCodeView.java:119) [jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.experimenter_gui.ui.code.XmlCodeView.formatXmlCode(XmlCodeView.java:185) [jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.experimenter_gui.editor.ribbon_tabs.RspecEditorRibbonTab.onFormatCodeAction(RspecEditorRibbonTab.java:65) [jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0]
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0]
	at java.lang.reflect.Method.invoke(Method.java:483) ~[na:1.8.0]
	at sun.reflect.misc.Trampoline.invoke(MethodUtil.java:71) [na:1.8.0]
	at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source) ~[na:na]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0]
	at java.lang.reflect.Method.invoke(Method.java:483) ~[na:1.8.0]
	at sun.reflect.misc.MethodUtil.invoke(MethodUtil.java:275) [na:1.8.0]
	at javafx.fxml.FXMLLoader$MethodHandler.invoke(FXMLLoader.java:1765) [jfxrt.jar:na]
	at javafx.fxml.FXMLLoader$ControllerMethodEventHandler.handle(FXMLLoader.java:1651) [jfxrt.jar:na]
	at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86) [jfxrt.jar:na]
	at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238) [jfxrt.jar:na]
	at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191) [jfxrt.jar:na]
	at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74) [jfxrt.jar:na]
	at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49) [jfxrt.jar:na]
	at javafx.event.Event.fireEvent(Event.java:204) [jfxrt.jar:na]
	at javafx.scene.Node.fireEvent(Node.java:8175) [jfxrt.jar:na]
	at javafx.scene.control.Button.fire(Button.java:185) [jfxrt.jar:na]
	at com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(ButtonBehavior.java:182) [jfxrt.jar:na]
	at com.sun.javafx.scene.control.skin.BehaviorSkinBase$1.handle(BehaviorSkinBase.java:96) [jfxrt.jar:na]
	at com.sun.javafx.scene.control.skin.BehaviorSkinBase$1.handle(BehaviorSkinBase.java:89) [jfxrt.jar:na]
	at com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(CompositeEventHandler.java:218) [jfxrt.jar:na]
	at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:80) [jfxrt.jar:na]
	at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238) [jfxrt.jar:na]
	at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191) [jfxrt.jar:na]
	at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) [jfxrt.jar:na]
	at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) [jfxrt.jar:na]
	at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74) [jfxrt.jar:na]
	at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:54) [jfxrt.jar:na]
	at javafx.event.Event.fireEvent(Event.java:204) [jfxrt.jar:na]
	at javafx.scene.Scene$MouseHandler.process(Scene.java:3746) [jfxrt.jar:na]
	at javafx.scene.Scene$MouseHandler.access$1800(Scene.java:3471) [jfxrt.jar:na]
	at javafx.scene.Scene.impl_processMouseEvent(Scene.java:1695) [jfxrt.jar:na]
	at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2486) [jfxrt.jar:na]
	at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:314) [jfxrt.jar:na]
	at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:243) [jfxrt.jar:na]
	at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0]
	at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:345) [jfxrt.jar:na]
	at com.sun.glass.ui.View.handleMouseEvent(View.java:526) [jfxrt.jar:na]
	at com.sun.glass.ui.View.notifyMouse(View.java:898) [jfxrt.jar:na]
Warning:  org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Compiler warnings:
  WARNING:  'org.apache.xerces.jaxp.SAXParserImpl: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.'
Warning:  org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Compiler warnings:
  WARNING:  'org.apache.xerces.jaxp.SAXParserImpl: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.'
Warning:  org.apache.xerces.parsers.SAXParser: Feature 'http://javax.xml.XMLConstants/feature/secure-processing' is not recognized.
Warning:  org.apache.xerces.parsers.SAXParser: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.
Warning:  org.apache.xerces.parsers.SAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Warning:  org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Compiler warnings:
  WARNING:  'org.apache.xerces.jaxp.SAXParserImpl: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.'
Warning:  org.apache.xerces.parsers.SAXParser: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.
Warning:  org.apache.xerces.parsers.SAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Warning:  org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Compiler warnings:
  WARNING:  'org.apache.xerces.jaxp.SAXParserImpl: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.'
Warning:  org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Compiler warnings:
  WARNING:  'org.apache.xerces.jaxp.SAXParserImpl: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.'
Warning:  org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Compiler warnings:
  WARNING:  'org.apache.xerces.jaxp.SAXParserImpl: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.'
Warning:  org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.
Compiler warnings:
  WARNING:  'org.apache.xerces.jaxp.SAXParserImpl: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.'
12:15:19.902 [JavaFX Application Thread] DEBUG b.i.i.j.e.util.SliceDefinitionBackup - Wrote Experiment backup-file to /Users/willner/.jFed/slice_backup/dfgh.rspec
12:15:20.064 [JavaFX Application Thread] DEBUG b.i.i.j.e.editor.ModelRspecEditor - Arranging all nodes on a circle of 600.0x400.0
12:15:25.338 [JavaFX Application Thread] DEBUG b.i.i.j.e.slice.raw.RawSliceView - Initializing RawSliceView with slice urn:publicid:IDN+wall2.ilabt.iminds.be:jfedusers+slice+dfgh
12:15:25.341 [JavaFX Application Thread] INFO  b.i.i.j.e.slice.SliceController - Will add user specified public key to created slivers: ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAAAgQDESMajvMfzbgd5CMdaP/V3O5Fo7TH1fTDdJWrY/EGlx0K3RlX7ad8DFfWh3dd71Cxh3b6WSEdCnil9LH7eBNRoAfRWOKynlwahIIvVtRUkDFQzJ0ZF5Epn4fGwTqTB+sb2hkC5xVFB/Cip40DnLmlBLntWb9GF+43C/8paJwPBKQ==
12:15:26.399 [TaskThread-2] ERROR be.iminds.ilabt.jfed.highlevel.controller.TaskThread - Run failed: FXTaskExecution(5 "Create Sliver @ urn:publicid:IDN+fuseco.fokus.fraunhofer.de+authority+cm" RUNNING, deps={"Get Slice Credential urn:publicid:IDN+wall2.ilabt.iminds.be:jfedusers+slice+dfgh" RUNNING, "Get User SSH Keys" SUCCESS})  -> Exception="java.lang.NullPointerException"
java.lang.NullPointerException
	at be.iminds.ilabt.jfed.lowlevel.api_wrapper.impl.AutomaticAggregateManagerWrapper.setupProtoGeniAMExtensions(AutomaticAggregateManagerWrapper.java:114) ~[jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.lowlevel.api_wrapper.impl.AutomaticAggregateManagerWrapper.choose(AutomaticAggregateManagerWrapper.java:81) ~[jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.lowlevel.api_wrapper.impl.AutomaticAggregateManagerWrapper.<init>(AutomaticAggregateManagerWrapper.java:36) ~[jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.highlevel.controller.HighLevelController.getAggregateManagerWrapper(HighLevelController.java:136) ~[jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.highlevel.controller.HighLevelController$CreateSliverTask.doTask(HighLevelController.java:1407) ~[jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.highlevel.controller.TaskThread.runTask(TaskThread.java:199) [jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at be.iminds.ilabt.jfed.highlevel.controller.TaskThread$1.run(TaskThread.java:58) [jFed-experimenter-GUI.jar:5.0.1-SNAPSHOT]
	at java.lang.Thread.run(Thread.java:744) [?:1.8.0]