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AnnaTSW0609/Get_interpro_XML_query

Last active July 30, 2018 02:20
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Get_interpro_XML_query
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName = "plants_mart" formatter = "TSV" header = "0" uniqueRows = "0" count = "" datasetConfigVersion = "0.6" >
<Dataset name = "athaliana_eg_gene" interface = "default" >
<Filter name = "with_interpro" excluded = "0"/>
<Attribute name = "ensembl_gene_id" />
<Attribute name = "ensembl_transcript_id" />
<Attribute name = "ensembl_peptide_id" />
<Attribute name = "interpro" />
<Attribute name = "interpro_short_description" />
<Attribute name = "interpro_description" />
</Dataset>
</Query>
Raw
get_pfam_XML_query
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName = "plants_mart" formatter = "TSV" header = "0" uniqueRows = "0" count = "" datasetConfigVersion = "0.6" >
<Dataset name = "athaliana_eg_gene" interface = "default" >
<Filter name = "with_pfam" excluded = "0"/>
<Attribute name = "ensembl_gene_id" />
<Attribute name = "ensembl_transcript_id" />
<Attribute name = "ensembl_peptide_id" />
<Attribute name = "pfam" />
</Dataset>
</Query>
Raw
get_profile_XML_query
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName = "plants_mart" formatter = "TSV" header = "0" uniqueRows = "0" count = "" datasetConfigVersion = "0.6" >
<Dataset name = "athaliana_eg_gene" interface = "default" >
<Attribute name = "ensembl_gene_id" />
<Attribute name = "ensembl_transcript_id" />
<Attribute name = "ensembl_peptide_id" />
</Dataset>
</Query>
Raw
get_translation_main_XML
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName = "plants_mart" formatter = "TSV" header = "0" uniqueRows = "0" count = "" datasetConfigVersion = "0.6" >
<Dataset name = "athaliana_eg_gene" interface = "default" >
<Attribute name = "ensembl_gene_id" />
<Attribute name = "ensembl_transcript_id" />
<Attribute name = "ensembl_peptide_id" />
</Dataset>
</Query>
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