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Bayesian Survival Analysis PyMC3 Tutorial
@markdickson vars is now varnames. That said I am having issues where all samples of Beta end up being zero.
Please see "http://docs.pymc.io/notebooks/survival_analysis.html" for good/updated code
How do you validate the predictions and test their accuracy?
Great summary.
I got a "can't pickle fortran objects" error which was unrelated to your notebook. I updated conda and it ran normally.
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Using Anaconda 2.4.0 and the latest pymc3, there's an error executing cell 18:
pm.traceplot(trace, vars=['beta']);
gives the error
TypeError Traceback (most recent call last)
in ()
----> 1 pm.traceplot(trace, vars=['beta']);
TypeError: traceplot() got an unexpected keyword argument 'vars'
Is this notebook out of date?