Bek’s gists

Bek / CpG_Methylation_Sanity_Check.ipynb

Last active March 20, 2019 09:09

This code looks at methylation region in base pair resolution and gets ratio of signal values in C to G nucleotides in ENCODE whole genome bisulfite sequencing experiment ENCSR481JIW

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Bek / multi-task.ipynb

Created November 25, 2018 09:32

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Bek / cnn-with-positive-and-negative-direction-reads.ipynb

Created November 16, 2018 06:57

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Bek / bigwig_processing.ipynb

Last active November 15, 2018 01:47

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Bek / mapping_test.sh

Last active April 5, 2016 19:19

Elasticsearch not_analyzed still gets analyzed when included in _all

	curl -XDELETE 'http://localhost:9200/test'
	echo
	curl -XPUT 'http://localhost:9200/test'
	echo
	echo
	curl -XPUT 'http://localhost:9200/test/_mapping/message' -d '
	{
	"message" : {
	"properties" : {
	"message" : {"type" : "string", "store" : "true" },

Bek / gist:2342056

Created April 9, 2012 07:01 — forked from shazron/gist:1725083

PhoneGap/Cordova: Open a url in the same UIWebView programmatically

	function openInWebView(url)
	{
	var anchor = document.createElement('a');
	anchor.setAttribute('href', url);
	//anchor.setAttribute('target', '_self');

	var dispatch = document.createEvent('HTMLEvents')
	dispatch.initEvent('click', true, true);

	anchor.dispatchEvent(dispatch);

Bek / gist:1657212

Created January 22, 2012 14:22

	Exception in SMS Gateway: incompatible character encodings: ASCII-8BIT and US-ASCII at /Users/Bek/ruby-smpp/lib/smpp/pdu/base.rb:91:in `initialize'
	/Users/Bek/ruby-smpp/lib/smpp/pdu/submit_sm.rb:49:in `initialize'
	/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `new'
	/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `send_mt'
	sample_gateway.rb:46:in `send_mt'
	sample_gateway.rb:27:in `receive_line'
	/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/em/protocols/linetext2.rb:64:in `receive_data'
	/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run_machine'
	/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run'
	sample_gateway.rb:61:in `block in start'

Bek / gist:1657211

Created January 22, 2012 14:22

	Exception in SMS Gateway: incompatible character encodings: ASCII-8BIT and US-ASCII at /Users/Bek/ruby-smpp/lib/smpp/pdu/base.rb:91:in `initialize'
	/Users/Bek/ruby-smpp/lib/smpp/pdu/submit_sm.rb:49:in `initialize'
	/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `new'
	/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `send_mt'
	sample_gateway.rb:46:in `send_mt'
	sample_gateway.rb:27:in `receive_line'
	/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/em/protocols/linetext2.rb:64:in `receive_data'
	/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run_machine'
	/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run'
	sample_gateway.rb:61:in `block in start'

Bek / gist:1540029

Created December 30, 2011 14:11 — forked from raykrueger/gist:1534951

	require 'logger'
	require 'openssl'

	class UcellGateway

	#dunno what this is, but it's yours :)
	include MessageFilter

	def initialize
	@logger = Logger.new

Bek / gist:1530609

Created December 29, 2011 00:11

	module MessageSender

	def self.redis
	@redis \|\|= EM::Hiredis.connect
	end

	def self.next
	if UcellGateway.connection_exists == true
	redis.blpop("ucell-out", 0) do \|item\| #blpop on redis return an array with key(ucell-out) and value
	if item[1]

Ulugbek Baymuradov Bek