Created
March 19, 2024 16:15
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import tarfile | |
from pathlib import Path | |
import numpy as np | |
from sunpy.net import Fido, attrs as a | |
import dkist | |
import dkist.net | |
# Set this to be the parent directory of both datasets | |
WORKING_DIR = Path("/data/dkist/prod/pid_2_114") | |
# Uncomment this to run a globus transfer which will download the two datasets to the above dir | |
# (Assumes your Globus paths and filesystem paths are the same) | |
# dkist.net.transfer_complete_datasets(["BKPLX", "AJQWW"], path=WORKING_DIR/"{dataset_id}") | |
def make_tar(dataset, archive_dir=None, tarfilename=None, base_path=None, tile_slice=np.s_[...]): | |
ds = dataset | |
if isinstance(dataset, dkist.TiledDataset): | |
filenames = [] | |
for tile in dataset.flat: | |
filenames += tile[tile_slice].files.filenames | |
# Pick one tile to use to get the base path | |
ds = tile | |
else: | |
filenames = dataset.files.filenames | |
archive_dir = archive_dir or Path(".") | |
tarfilename = tarfilename.format(**dataset.inventory) or f"{dataset.inventory['datasetId']}.tar" | |
base_path = base_path or ds.files.basepath | |
with tarfile.open(archive_dir / tarfilename, "w") as tf: | |
for fname in filenames: | |
tf.add(base_path / fname, arcname=fname) | |
if asdf_file := list(base_path.glob("*.asdf")): | |
tf.add(asdf_file[0], arcname=asdf_file[0].name) | |
# VISP | |
bkplx = dkist.load_dataset(WORKING_DIR / "BKPLX") | |
make_tar(bkplx[0], tarfilename="{datasetId}_stokesI.tar", archive_dir=Path("~").expanduser()) | |
# VBI | |
ajqww = dkist.load_dataset(WORKING_DIR / "AJQWW") | |
make_tar(ajqww, tile_slice=np.s_[0], tarfilename="{datasetId}_single_mosaic.tar", archive_dir=Path("~").expanduser()) |
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