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Using singularity image to run jobs in CHTC
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| #!/bin/bash | |
| img=$1 | |
| exec=$2 | |
| shift 2 | |
| args=$* | |
| singularity exec -B $_CONDOR_SCRATCH_DIR:/scratch $img /scratch/$exec $args |
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| universe = vanilla | |
| log = $(Cluster)_$(Process).log | |
| error = $(Cluster)_$(Process).err | |
| output = $(Cluster)_$(Process).out | |
| executable = run.singularity.sh | |
| arguments = ubuntu.img hello.sh $(Cluster) $(Process) | |
| should_transfer_files = YES | |
| when_to_transfer_output = ON_EXIT | |
| transfer_input_files = ubuntu.img, hello.sh | |
| requirements = HasSingularity == true && OpSysMajorVer == 7 | |
| request_cpus = 1 | |
| request_memory = 1GB | |
| #increase disk request based on size of your image! | |
| request_disk = 2GB | |
| queue |
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