Created
April 19, 2018 07:25
-
-
Save Chrisvandr/ce0cb1d2c3832ec1d6f98d4ad3e8c23a to your computer and use it in GitHub Desktop.
Display UDI data in heatmap
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
import pandas as pd | |
import matplotlib.pyplot as plt | |
import seaborn as sns | |
import getpass | |
UserName = getpass.getuser() | |
if UserName == 'cvdronke': | |
path_to_file = 'C:/Users/' + UserName | |
else: | |
path_to_file = 'D:' | |
df = pd.read_table(path_to_file + '/OneDrive - BuroHappold/SF000004_A.txt', | |
skiprows=15, # skiprows | |
delim_whitespace=True, | |
header=None) | |
df = df[:-1] # remove avg. at end of file | |
df_xyz = df.iloc[:, :3] # get x,y,z columns | |
df_UDI = df.iloc[:, 3:] # get UDI columns | |
df_UDI.columns = ['UDI_' + str(i) for i in range(len(df_UDI.columns))] | |
df_xyz.columns = ['x', 'y', 'z'] | |
df_xyz.x = df_xyz.x.str.strip('()') | |
df_xyz.z = df_xyz.z.str.strip('()') | |
df = pd.concat([df_xyz.x, df_xyz.y, df_UDI.UDI_3], axis=1) # get UDI_# | |
df.columns = ['x', 'y', 'z'] | |
df = df.apply(pd.to_numeric) | |
df = df.pivot(index='x', columns='y', values='z') | |
sns.heatmap(df, | |
annot=False, | |
cbar=False, | |
yticklabels=False, | |
xticklabels=False, | |
fmt='.0f', | |
annot_kws={"size": 7}, | |
cmap="Blues_r", | |
linewidth=0.0, | |
rasterized=True) | |
plt.savefig(path_to_file + '/OneDrive - BuroHappold/UDI_annot.png', dpi=500, transparent=True, bbox_inches='tight') | |
plt.show() |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Nice quick and easy! I like it!