Created
February 5, 2018 18:18
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Checking interval membership in a tidy-ish way
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library(dplyr) | |
library(purrr) | |
#### setup #### | |
tbl <- tibble( | |
id = 1:25 | |
) | |
# tidy way to store many intervals with minimal restriction | |
interval_tbl <- tribble( | |
~id, ~lower, ~upper, | |
"foo", 0, 2, | |
"bar", 10, 12, | |
"baz", 20, 22, | |
"foobar", 2, 10, # overlap at bounds | |
"barbaz", 11, 21 # further overlap | |
) | |
#### functions #### | |
in_any_interval <- function(x, interval_tbl) { | |
interval_tbl %>% | |
select(lower, upper) %>% | |
pmap(~ between(x, ..1, ..2)) %>% | |
pmap_lgl(any) | |
} | |
# minor change | |
how_many_intervals <- function(x, interval_tbl) { | |
interval_tbl %>% | |
select(lower, upper) %>% | |
pmap(~ between(x, ..1, ..2)) %>% | |
pmap_int(sum) | |
} | |
# bit weirder | |
which_intervals <- function(x, interval_tbl) { | |
interval_tbl %>% | |
select(lower, upper) %>% | |
pmap(~ between(x, ..1, ..2)) %>% | |
pmap(lift_vd(which)) | |
} | |
#### usage #### | |
# one at a time | |
# inefficient if you actually want more than one of these | |
naive_result <- tbl %>% | |
mutate( | |
in_any_interval = in_any_interval( id, interval_tbl), | |
how_many_intervals = how_many_intervals(id, interval_tbl), | |
which_intervals = which_intervals( id, interval_tbl) | |
) | |
# more efficient | |
# everything can be computed from which | |
better_result <- tbl %>% | |
mutate( | |
which_intervals = which_intervals(id, interval_tbl), | |
how_many_intervals = map_int(which_intervals, length), | |
in_any_interval = map_lgl(which_intervals, ~ length(.x) > 0) | |
) | |
# apparently all.equal/all_equal hates list cols | |
results <- list(naive_result, better_result) | |
results %>% | |
map(select, -which_intervals) %>% | |
reduce(all_equal) | |
results %>% | |
map(pull, which_intervals) %>% | |
reduce(all.equal) |
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