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December 29, 2015 20:19
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SBML-shorthand version of https://gist.github.com/CnrLwlss/7720846 You can quickly convert this shorthand to full SBML with this useful tool: http://semanticsbml.org/semanticSBML/default/shorthand_sbml Note that you need to include a blank line at the end of the shorthand.
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| @model:2.3.1=ProteinExample | |
| @compartments | |
| cell=1 | |
| @species | |
| cell:A=4 | |
| cell:B=2 | |
| cell:AB=0 | |
| cell:NULL=0 | |
| @parameters | |
| k1=0.15 | |
| k2=0.075 | |
| @reactions | |
| @r=reaction1 | |
| A+B -> AB | |
| k1*A*B | |
| @r=reaction2 | |
| B -> NULL | |
| k2*B | |
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