Last active
June 22, 2016 15:35
-
-
Save ConradStack/fae1d88a87388dec516534c8151d02fc to your computer and use it in GitHub Desktop.
How to install the cacao genome data packages in R
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Steps: | |
| # 1. Install prerequisite R packages (devtools, BSgenome) | |
| # 2. Install BSgenome.Tcacao packages from github | |
| ### install devtools (if needed) | |
| install.packages("devtools") | |
| ### install BSgenome from bioconductor | |
| source("https://bioconductor.org/biocLite.R") | |
| biocLite("BSgenome") | |
| ### install Matina 1-6 reference genome | |
| devtools:::install_github("MarsMiami/BSgenome.Tcacao/BSgenome.Tcacao.MarsInc.v11") | |
| ### install Criollo reference genome | |
| devtools:::install_github("MarsMiami/BSgenome.Tcacao/BSgenome.Tcacao.CIRAD.v10") | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment