R-bash-wrapper.R

#!/bin/sh
# -*- mode:R -*-
#PBS -l nodes=1:ppn=8,mem=30gb

'\' >/dev/null 2>&1 || true
# This is bash code to set up the environment

echo "Hello from bash!"
echo "Args are: $@"

# Bash setup code ends here
Rscript - "$@" <<"EOF";
invisible('#')
## R code starts after this line

message("Hello from R!")
args <- commandArgs(TRUE)
message("Args are: ", deparse(args))

EOF <- NULL
EOF