DarwinAwardWinner · June 14, 2016 20:52
diff --git a/# pcre2 - 2016-06-14_13-49-25.txt b/# pcre2 - 2016-06-14_13-49-25.txt
 Homebrew build logs for pcre2 on "CentOS release 6.7 (Final)"
 Build date: 2016-06-14 13:49:25
diff --git a/00.config.out b/00.config.out
 HOMEBREW_VERSION: 0.9.9
 ORIGIN: https://github.com/Linuxbrew/brew.git
 HEAD: 91b4a8471614f2fe978c1031fd28dc181eac3c0e
 Last commit: 2 days ago
 Core tap ORIGIN: https://github.com/Linuxbrew/homebrew-core
 Core tap HEAD: 289181971566013d9ed5969f0a5d3383f8fedfd2
 Core tap last commit: 2 days ago
 HOMEBREW_PREFIX: /gpfs/home/rcthomps/.linuxbrew
 HOMEBREW_REPOSITORY: /gpfs/home/rcthomps/.linuxbrew
 HOMEBREW_CELLAR: /gpfs/home/rcthomps/.linuxbrew/Cellar
 HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
 CPU: 8-core 64-bit merom
 Kernel: Linux 2.6.32-573.12.1.el6.x86_64 x86_64 GNU/Linux
 OS: CentOS release 6.7 (Final)
 Codename: Final
 OS glibc: 2.12
 OS gcc: 4.4.7
 Linuxbrew glibc: 2.19
 Linuxbrew gcc: 5.3.0
 Clang: N/A
 X11: N/A
 System Ruby: 2.3.1 => /gpfs/home/rcthomps/.rbenv/versions/2.3.1/bin/ruby
 Perl: /gpfs/home/rcthomps/perl5/perlbrew/perls/perl-5.16.0/bin/perl
 Python: /gpfs/home/rcthomps/.pyenv/shims/python => /gpfs/home/rcthomps/.pyenv/versions/2.7.11/bin/python2.7
 Ruby: /gpfs/home/rcthomps/.rbenv/versions/2.3.1/bin/ruby
 Java: 1.8.0_65
diff --git a/00.doctor.out b/00.doctor.out
 Please note that these warnings are just used to help the Homebrew maintainers
 with debugging if you file an issue. If everything you use Homebrew for is
 working fine: please don't worry and just ignore them. Thanks!

 Warning: Setting LD_* vars can break dynamic linking.
 Set variables:
    LD_LIBRARY_PATH: /opt/applications/R/3.2.3/gnu/lib64/R/lib:/opt/applications/R/3.2.3/gnu/lib64/R/library/Rhipe/libs:/opt/applications/bamtools/2.4.0/gnu/lib/bamtools:/opt/applications/samtools/1.3/gnu/lib:/opt/applications/java/jdk1.8.0_65/lib:/opt/applications/fastx/0.0.14/gnu/lib:/opt/applications/blast/2.2.31+/lib

 Warning: "config" scripts exist outside your system or Homebrew directories.
 `./configure` scripts often look for *-config scripts to determine if
 software packages are installed, and what additional flags to use when
 compiling and linking.

 Having additional scripts in your path can confuse software installed via
 Homebrew if the config script overrides a system or Homebrew provided
 script of the same name. We found the following "config" scripts:
    /gpfs/home/rcthomps/.pyenv/shims/python2.7-config
    /gpfs/home/rcthomps/.pyenv/shims/python2-config
    /gpfs/home/rcthomps/.pyenv/shims/python-config
diff --git a/01.configure b/01.configure
 2016-06-14 13:48:37 -0700

 ./configure
 --disable-dependency-tracking
 --prefix=/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20
 --enable-pcre2-16
 --enable-pcre2-32
 --enable-pcre2grep-libz
 --enable-pcre2grep-libbz2
 --enable-jit

 checking for a BSD-compatible install... /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c
 checking whether build environment is sane... yes
 checking for a thread-safe mkdir -p... /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p
 checking for gawk... gawk
 checking whether make sets $(MAKE)... yes
 checking whether make supports nested variables... yes
 checking whether make supports nested variables... (cached) yes
 checking for style of include used by make... GNU
 checking for gcc... /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 checking whether the C compiler works... yes
 checking for C compiler default output file name... a.out
 checking for suffix of executables... 
 checking whether we are cross compiling... no
 checking for suffix of object files... o
 checking whether we are using the GNU C compiler... yes
 checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 accepts -g... yes
 checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to accept ISO C89... none needed
 checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 understands -c and -o together... yes
 checking dependency style of /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5... none
 checking for ar... ar
 checking the archiver (ar) interface... ar
 checking for gcc... (cached) /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 checking whether we are using the GNU C compiler... (cached) yes
 checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 accepts -g... (cached) yes
 checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to accept ISO C89... (cached) none needed
 checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 understands -c and -o together... (cached) yes
 checking dependency style of /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5... (cached) none
 checking how to run the C preprocessor... /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E
 checking for grep that handles long lines and -e... /bin/grep
 checking for egrep... /bin/grep -E
 checking for ANSI C header files... yes
 checking for sys/types.h... yes
 checking for sys/stat.h... yes
 checking for stdlib.h... yes
 checking for string.h... yes
 checking for memory.h... yes
 checking for strings.h... yes
 checking for inttypes.h... yes
 checking for stdint.h... yes
 checking for unistd.h... yes
 checking for int64_t... yes
 checking build system type... x86_64-unknown-linux-gnu
 checking host system type... x86_64-unknown-linux-gnu
 checking how to print strings... printf
 checking for a sed that does not truncate output... /gpfs/home/rcthomps/.linuxbrew/bin/sed
 checking for fgrep... /bin/grep -F
 checking for ld used by /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5... /gpfs/home/rcthomps/.linuxbrew/bin/ld
 checking if the linker (/gpfs/home/rcthomps/.linuxbrew/bin/ld) is GNU ld... yes
 checking for BSD- or MS-compatible name lister (nm)... /gpfs/home/rcthomps/.linuxbrew/bin/nm -B
 checking the name lister (/gpfs/home/rcthomps/.linuxbrew/bin/nm -B) interface... BSD nm
 checking whether ln -s works... yes
 checking the maximum length of command line arguments... 1966080
 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
 checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
 checking for /gpfs/home/rcthomps/.linuxbrew/bin/ld option to reload object files... -r
 checking for objdump... objdump
 checking how to recognize dependent libraries... pass_all
 checking for dlltool... dlltool
 checking how to associate runtime and link libraries... printf %s\n
 checking for archiver @FILE support... @
 checking for strip... strip
 checking for ranlib... ranlib
 checking command to parse /gpfs/home/rcthomps/.linuxbrew/bin/nm -B output from /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 object... ok
 checking for sysroot... no
 checking for a working dd... /gpfs/home/rcthomps/.linuxbrew/bin/dd
 checking how to truncate binary pipes... /gpfs/home/rcthomps/.linuxbrew/bin/dd bs=4096 count=1
 checking for mt... no
 checking if : is a manifest tool... no
 checking for dlfcn.h... yes
 checking for objdir... .libs
 checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -fno-rtti -fno-exceptions... yes
 checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to produce PIC... -fPIC -DPIC
 checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 PIC flag -fPIC -DPIC works... yes
 checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 static flag -static works... yes
 checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -c -o file.o... yes
 checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -c -o file.o... (cached) yes
 checking whether the /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 linker (/gpfs/home/rcthomps/.linuxbrew/bin/ld -m elf_x86_64) supports shared libraries... yes
 checking whether -lc should be explicitly linked in... no
 checking dynamic linker characteristics... GNU/Linux ld.so
 checking how to hardcode library paths into programs... immediate
 checking whether stripping libraries is possible... yes
 checking if libtool supports shared libraries... yes
 checking whether to build shared libraries... yes
 checking whether to build static libraries... yes
 checking whether ln -s works... yes
 checking whether the -Werror option is usable... yes
 checking for simple visibility declarations... yes
 checking for ANSI C header files... (cached) yes
 checking limits.h usability... yes
 checking limits.h presence... yes
 checking for limits.h... yes
 checking for sys/types.h... (cached) yes
 checking for sys/stat.h... (cached) yes
 checking dirent.h usability... yes
 checking dirent.h presence... yes
 checking for dirent.h... yes
 checking windows.h usability... no
 checking windows.h presence... no
 checking for windows.h... no
 checking for an ANSI C-conforming const... yes
 checking for size_t... yes
 checking for bcopy... yes
 checking for memmove... yes
 checking for strerror... yes
 checking zlib.h usability... yes
 checking zlib.h presence... yes
 checking for zlib.h... yes
 checking for gzopen in -lz... yes
 checking bzlib.h usability... yes
 checking bzlib.h presence... yes
 checking for bzlib.h... yes
 checking for libbz2... yes
 checking for the pthreads library -lpthreads... no
 checking whether pthreads work without any flags... no
 checking whether pthreads work with -Kthread... no
 checking whether pthreads work with -kthread... no
 checking for the pthreads library -llthread... no
 checking whether pthreads work with -pthread... yes
 checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
 checking if more special flags are required for pthreads... no
 checking for PTHREAD_PRIO_INHERIT... yes
 checking that generated files are newer than configure... done
 configure: creating ./config.status
 config.status: creating Makefile
 config.status: creating libpcre2-8.pc
 config.status: creating libpcre2-16.pc
 config.status: creating libpcre2-32.pc
 config.status: creating libpcre2-posix.pc
 config.status: creating pcre2-config
 config.status: creating src/pcre2.h
 config.status: creating src/config.h
 config.status: executing depfiles commands
 config.status: executing libtool commands
 config.status: executing script-chmod commands
 config.status: executing delete-old-chartables commands

 pcre2-10.20 configuration summary:

    Install prefix .................. : /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20
    C preprocessor .................. : /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E
    C compiler ...................... : /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
    Linker .......................... : /gpfs/home/rcthomps/.linuxbrew/bin/ld -m elf_x86_64
    C preprocessor flags ............ : -isystem/gpfs/home/rcthomps/.linuxbrew/include
    C compiler flags ................ : -pthread -Os -w -pipe -march=native -fvisibility=hidden
    Linker flags .................... : -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib
    Extra libraries ................. :  

    Build 8-bit pcre2 library ....... : yes
    Build 16-bit pcre2 library ...... : yes
    Build 32-bit pcre2 library ...... : yes
    Include debugging code .......... : no
    Enable JIT compiling support .... : yes
    Enable Unicode support .......... : yes
    Newline char/sequence ........... : lf
    \R matches only ANYCRLF ......... : no
    EBCDIC coding ................... : no
    EBCDIC code for NL .............. : n/a
    Rebuild char tables ............. : no
    Use stack recursion ............. : yes
    Internal link size .............. : 2
    Nested parentheses limit ........ : 250
    Match limit ..................... : 10000000
    Match limit recursion ........... : MATCH_LIMIT
    Build shared libs ............... : yes
    Build static libs ............... : yes
    Use JIT in pcre2grep ............ : yes
    Buffer size for pcre2grep ....... : 20480
    Link pcre2grep with libz ........ : yes
    Link pcre2grep with libbz2 ...... : yes
    Link pcre2test with libedit ..... : no
    Link pcre2test with libreadline . : no
    Valgrind support ................ : no
    Code coverage ................... : no

diff --git a/02.make b/02.make
 2016-06-14 13:48:47 -0700

 make

 rm -f src/pcre2_chartables.c
 ln -s /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/src/pcre2_chartables.c.dist /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/src/pcre2_chartables.c
 make  all-am
 make[1]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
  CC       src/libpcre2_8_la-pcre2_auto_possess.lo
  CC       src/libpcre2_8_la-pcre2_config.lo
  CC       src/libpcre2_8_la-pcre2_compile.lo
  CC       src/libpcre2_8_la-pcre2_dfa_match.lo
  CC       src/libpcre2_8_la-pcre2_context.lo
  CC       src/libpcre2_8_la-pcre2_error.lo
  CC       src/libpcre2_8_la-pcre2_jit_compile.lo
  CC       src/libpcre2_8_la-pcre2_maketables.lo
  CC       src/libpcre2_8_la-pcre2_match.lo
  CC       src/libpcre2_8_la-pcre2_match_data.lo
  CC       src/libpcre2_8_la-pcre2_newline.lo
  CC       src/libpcre2_8_la-pcre2_ord2utf.lo
  CC       src/libpcre2_8_la-pcre2_pattern_info.lo
  CC       src/libpcre2_8_la-pcre2_serialize.lo
  CC       src/libpcre2_8_la-pcre2_string_utils.lo
  CC       src/libpcre2_8_la-pcre2_study.lo
  CC       src/libpcre2_8_la-pcre2_substitute.lo
  CC       src/libpcre2_8_la-pcre2_substring.lo
  CC       src/libpcre2_8_la-pcre2_tables.lo
  CC       src/libpcre2_8_la-pcre2_ucd.lo
  CC       src/libpcre2_8_la-pcre2_valid_utf.lo
  CC       src/libpcre2_8_la-pcre2_xclass.lo
  CC       src/libpcre2_8_la-pcre2_chartables.lo
  CC       src/libpcre2_16_la-pcre2_auto_possess.lo
  CC       src/libpcre2_16_la-pcre2_compile.lo
  CC       src/libpcre2_16_la-pcre2_config.lo
  CC       src/libpcre2_16_la-pcre2_context.lo
  CC       src/libpcre2_16_la-pcre2_dfa_match.lo
  CC       src/libpcre2_16_la-pcre2_error.lo
  CC       src/libpcre2_16_la-pcre2_jit_compile.lo
  CC       src/libpcre2_16_la-pcre2_maketables.lo
  CC       src/libpcre2_16_la-pcre2_match.lo
  CC       src/libpcre2_16_la-pcre2_match_data.lo
  CC       src/libpcre2_16_la-pcre2_newline.lo
  CC       src/libpcre2_16_la-pcre2_ord2utf.lo
  CC       src/libpcre2_16_la-pcre2_pattern_info.lo
  CC       src/libpcre2_16_la-pcre2_serialize.lo
  CC       src/libpcre2_16_la-pcre2_string_utils.lo
  CC       src/libpcre2_16_la-pcre2_study.lo
  CC       src/libpcre2_16_la-pcre2_substitute.lo
  CC       src/libpcre2_16_la-pcre2_substring.lo
  CC       src/libpcre2_16_la-pcre2_tables.lo
  CC       src/libpcre2_16_la-pcre2_ucd.lo
  CC       src/libpcre2_16_la-pcre2_valid_utf.lo
  CC       src/libpcre2_16_la-pcre2_xclass.lo
  CC       src/libpcre2_16_la-pcre2_chartables.lo
  CC       src/libpcre2_32_la-pcre2_auto_possess.lo
  CC       src/libpcre2_32_la-pcre2_compile.lo
  CC       src/libpcre2_32_la-pcre2_config.lo
  CC       src/libpcre2_32_la-pcre2_context.lo
  CC       src/libpcre2_32_la-pcre2_dfa_match.lo
  CC       src/libpcre2_32_la-pcre2_error.lo
  CC       src/libpcre2_32_la-pcre2_jit_compile.lo
  CC       src/libpcre2_32_la-pcre2_maketables.lo
  CC       src/libpcre2_32_la-pcre2_match.lo
  CC       src/libpcre2_32_la-pcre2_match_data.lo
  CC       src/libpcre2_32_la-pcre2_newline.lo
  CC       src/libpcre2_32_la-pcre2_ord2utf.lo
  CC       src/libpcre2_32_la-pcre2_pattern_info.lo
  CC       src/libpcre2_32_la-pcre2_serialize.lo
  CC       src/libpcre2_32_la-pcre2_string_utils.lo
  CC       src/libpcre2_32_la-pcre2_study.lo
  CC       src/libpcre2_32_la-pcre2_substitute.lo
  CC       src/libpcre2_32_la-pcre2_substring.lo
  CC       src/libpcre2_32_la-pcre2_tables.lo
  CC       src/libpcre2_32_la-pcre2_ucd.lo
  CC       src/libpcre2_32_la-pcre2_valid_utf.lo
  CC       src/libpcre2_32_la-pcre2_xclass.lo
  CC       src/libpcre2_32_la-pcre2_chartables.lo
  CC       src/libpcre2_posix_la-pcre2posix.lo
  CC       src/pcre2grep-pcre2grep.o
  CC       src/pcre2test-pcre2test.o
  CC       src/pcre2_jit_test-pcre2_jit_test.o
  CCLD     libpcre2-8.la
  CCLD     libpcre2-16.la
  CCLD     libpcre2-posix.la
  CCLD     pcre2grep
  CCLD     libpcre2-32.la
  CCLD     pcre2test
  CCLD     pcre2_jit_test
 make[1]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
diff --git a/03.make b/03.make
 2016-06-14 13:49:11 -0700

 make
 check

 make  check-am
 make[1]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make  
 make[2]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make  all-am
 make[3]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make[3]: Nothing to be done for `all-am'.
 make[3]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make[2]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make  check-TESTS
 make[2]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make[3]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 PASS: RunGrepTest
 PASS: RunTest
 PASS: pcre2_jit_test
 ============================================================================
 Testsuite summary for PCRE2 10.20
 ============================================================================
 # TOTAL: 3
 # PASS:  3
 # SKIP:  0
 # XFAIL: 0
 # FAIL:  0
 # XPASS: 0
 # ERROR: 0
 ============================================================================
 make[3]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make[2]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make[1]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
diff --git a/04.make b/04.make
 2016-06-14 13:49:23 -0700

 make
 install

 make  install-am
 make[1]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make[2]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2'
 /bin/sh ./libtool   --mode=install /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c   libpcre2-8.la libpcre2-16.la libpcre2-32.la libpcre2-posix.la '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2/html'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man1'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man3'
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c pcre2-config '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 AUTHORS COPYING ChangeLog LICENCE NEWS README doc/pcre2.txt doc/pcre2-config.txt doc/pcre2grep.txt doc/pcre2test.txt '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2'
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 src/pcre2posix.h '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/pkgconfig'
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/html/NON-AUTOTOOLS-BUILD.txt doc/html/README.txt doc/html/index.html doc/html/pcre2-config.html doc/html/pcre2.html doc/html/pcre2_callout_enumerate.html doc/html/pcre2_code_free.html doc/html/pcre2_compile.html doc/html/pcre2_compile_context_copy.html doc/html/pcre2_compile_context_create.html doc/html/pcre2_compile_context_free.html doc/html/pcre2_config.html doc/html/pcre2_dfa_match.html doc/html/pcre2_general_context_copy.html doc/html/pcre2_general_context_create.html doc/html/pcre2_general_context_free.html doc/html/pcre2_get_error_message.html doc/html/pcre2_get_mark.html doc/html/pcre2_get_ovector_count.html doc/html/pcre2_get_ovector_pointer.html doc/html/pcre2_get_startchar.html doc/html/pcre2_jit_compile.html doc/html/pcre2_jit_free_unused_memory.html doc/html/pcre2_jit_match.html doc/html/pcre2_jit_stack_assign.html doc/html/pcre2_jit_stack_create.html doc/html/pcre2_jit_stack_free.html doc/html/pcre2_maketables.html doc/html/pcre2_match.html doc/html/pcre2_match_context_copy.html doc/html/pcre2_match_context_create.html doc/html/pcre2_match_context_free.html doc/html/pcre2_match_data_create.html doc/html/pcre2_match_data_create_from_pattern.html doc/html/pcre2_match_data_free.html doc/html/pcre2_pattern_info.html doc/html/pcre2_serialize_decode.html doc/html/pcre2_serialize_encode.html doc/html/pcre2_serialize_free.html doc/html/pcre2_serialize_get_number_of_codes.html '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2/html'
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-8.so.0.2.0 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.so.0.2.0
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 src/pcre2.h '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-8.so.0.2.0 libpcre2-8.so.0 || { rm -f libpcre2-8.so.0 && ln -s libpcre2-8.so.0.2.0 libpcre2-8.so.0; }; })
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/pcre2-config.1 doc/pcre2grep.1 doc/pcre2test.1 '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man1'
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/pcre2.3 doc/pcre2_callout_enumerate.3 doc/pcre2_code_free.3 doc/pcre2_compile.3 doc/pcre2_compile_context_copy.3 doc/pcre2_compile_context_create.3 doc/pcre2_compile_context_free.3 doc/pcre2_config.3 doc/pcre2_dfa_match.3 doc/pcre2_general_context_copy.3 doc/pcre2_general_context_create.3 doc/pcre2_general_context_free.3 doc/pcre2_get_error_message.3 doc/pcre2_get_mark.3 doc/pcre2_get_ovector_count.3 doc/pcre2_get_ovector_pointer.3 doc/pcre2_get_startchar.3 doc/pcre2_jit_compile.3 doc/pcre2_jit_free_unused_memory.3 doc/pcre2_jit_match.3 doc/pcre2_jit_stack_assign.3 doc/pcre2_jit_stack_create.3 doc/pcre2_jit_stack_free.3 doc/pcre2_maketables.3 doc/pcre2_match.3 doc/pcre2_match_context_copy.3 doc/pcre2_match_context_create.3 doc/pcre2_match_context_free.3 doc/pcre2_match_data_create.3 doc/pcre2_match_data_create_from_pattern.3 doc/pcre2_match_data_free.3 doc/pcre2_pattern_info.3 doc/pcre2_serialize_decode.3 doc/pcre2_serialize_encode.3 doc/pcre2_serialize_free.3 doc/pcre2_serialize_get_number_of_codes.3 doc/pcre2_set_bsr.3 doc/pcre2_set_callout.3 doc/pcre2_set_character_tables.3 doc/pcre2_set_compile_recursion_guard.3 '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man3'
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 libpcre2-8.pc libpcre2-posix.pc libpcre2-16.pc libpcre2-32.pc '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/pkgconfig'
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-8.so.0.2.0 libpcre2-8.so || { rm -f libpcre2-8.so && ln -s libpcre2-8.so.0.2.0 libpcre2-8.so; }; })
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-8.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.la
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-16.so.0.2.0 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.so.0.2.0
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-16.so.0.2.0 libpcre2-16.so.0 || { rm -f libpcre2-16.so.0 && ln -s libpcre2-16.so.0.2.0 libpcre2-16.so.0; }; })
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-16.so.0.2.0 libpcre2-16.so || { rm -f libpcre2-16.so && ln -s libpcre2-16.so.0.2.0 libpcre2-16.so; }; })
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-16.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.la
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-32.so.0.2.0 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.so.0.2.0
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-32.so.0.2.0 libpcre2-32.so.0 || { rm -f libpcre2-32.so.0 && ln -s libpcre2-32.so.0.2.0 libpcre2-32.so.0; }; })
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-32.so.0.2.0 libpcre2-32.so || { rm -f libpcre2-32.so && ln -s libpcre2-32.so.0.2.0 libpcre2-32.so; }; })
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-32.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.la
 libtool: warning: relinking 'libpcre2-posix.la'
 libtool: install: (cd /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20; /bin/sh "/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/libtool"  --silent --tag CC --mode=relink /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -DPCRE2_CODE_UNIT_WIDTH=8 -fvisibility=hidden -pthread -Os -w -pipe -march=native -version-info 0:0:0 -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib -o libpcre2-posix.la -rpath /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib src/libpcre2_posix_la-pcre2posix.lo libpcre2-8.la )
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/html/pcre2_set_bsr.html doc/html/pcre2_set_callout.html doc/html/pcre2_set_character_tables.html doc/html/pcre2_set_compile_recursion_guard.html doc/html/pcre2_set_match_limit.html doc/html/pcre2_set_newline.html doc/html/pcre2_set_parens_nest_limit.html doc/html/pcre2_set_recursion_limit.html doc/html/pcre2_set_recursion_memory_management.html doc/html/pcre2_substitute.html doc/html/pcre2_substring_copy_byname.html doc/html/pcre2_substring_copy_bynumber.html doc/html/pcre2_substring_free.html doc/html/pcre2_substring_get_byname.html doc/html/pcre2_substring_get_bynumber.html doc/html/pcre2_substring_length_byname.html doc/html/pcre2_substring_length_bynumber.html doc/html/pcre2_substring_list_free.html doc/html/pcre2_substring_list_get.html doc/html/pcre2_substring_nametable_scan.html doc/html/pcre2_substring_number_from_name.html doc/html/pcre2api.html doc/html/pcre2build.html doc/html/pcre2callout.html doc/html/pcre2compat.html doc/html/pcre2demo.html doc/html/pcre2grep.html doc/html/pcre2jit.html doc/html/pcre2limits.html doc/html/pcre2matching.html doc/html/pcre2partial.html doc/html/pcre2pattern.html doc/html/pcre2perform.html doc/html/pcre2posix.html doc/html/pcre2sample.html doc/html/pcre2serialize.html doc/html/pcre2stack.html doc/html/pcre2syntax.html doc/html/pcre2test.html doc/html/pcre2unicode.html '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2/html'
 /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/pcre2_set_match_limit.3 doc/pcre2_set_newline.3 doc/pcre2_set_parens_nest_limit.3 doc/pcre2_set_recursion_limit.3 doc/pcre2_set_recursion_memory_management.3 doc/pcre2_substitute.3 doc/pcre2_substring_copy_byname.3 doc/pcre2_substring_copy_bynumber.3 doc/pcre2_substring_free.3 doc/pcre2_substring_get_byname.3 doc/pcre2_substring_get_bynumber.3 doc/pcre2_substring_length_byname.3 doc/pcre2_substring_length_bynumber.3 doc/pcre2_substring_list_free.3 doc/pcre2_substring_list_get.3 doc/pcre2_substring_nametable_scan.3 doc/pcre2_substring_number_from_name.3 doc/pcre2api.3 doc/pcre2build.3 doc/pcre2callout.3 doc/pcre2compat.3 doc/pcre2demo.3 doc/pcre2jit.3 doc/pcre2limits.3 doc/pcre2matching.3 doc/pcre2partial.3 doc/pcre2pattern.3 doc/pcre2perform.3 doc/pcre2posix.3 doc/pcre2sample.3 doc/pcre2serialize.3 doc/pcre2stack.3 doc/pcre2syntax.3 doc/pcre2unicode.3 '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man3'
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-posix.so.0.0.0T /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.so.0.0.0
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-posix.so.0.0.0 libpcre2-posix.so.0 || { rm -f libpcre2-posix.so.0 && ln -s libpcre2-posix.so.0.0.0 libpcre2-posix.so.0; }; })
 libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-posix.so.0.0.0 libpcre2-posix.so || { rm -f libpcre2-posix.so && ln -s libpcre2-posix.so.0.0.0 libpcre2-posix.so; }; })
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-posix.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.la
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-8.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.a
 libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.a
 libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.a
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-16.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.a
 libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.a
 libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.a
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-32.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.a
 libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.a
 libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.a
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-posix.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.a
 libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.a
 libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.a
 libtool: finish: PATH="/gpfs/home/rcthomps/.rbenv/versions/2.3.1/bin:/gpfs/home/rcthomps/.rbenv/libexec:/gpfs/home/rcthomps/.rbenv/plugins/ruby-build/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/.linuxbrew/sbin:/opt/applications/gmap/160501/gnu/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/perl5/perlbrew/bin:/gpfs/home/rcthomps/perl5/perlbrew/perls/perl-5.16.0/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/opt/applications/R/3.2.3/gnu/bin:/opt/applications/tophat/2.1.0/gnu/bin:/opt/applications/bowtie/1.1.2:/opt/applications/star/2.5.1b/gnu/bin:/opt/applications/vcftools/0.1.14/gnu/bin:/opt/applications/tabix/0.2.6/gnu:/opt/applications/bamtools/2.4.0/gnu/bin:/opt/applications/samtools/1.3/gnu/bin:/opt/applications/picard/2.1.0/bin:/opt/applications/java/jdk1.8.0_65/bin:/opt/applications/ant/apache-ant-1.9.0/bin:/opt/applications/fastx/0.0.14/gnu/bin:/opt/applications/cufflinks/2.2.1/bin:/opt/applications/clustalw/2.1/gnu/bin:/opt/applications/bwa/0.7.12/gnu/bin:/opt/applications/blast/2.2.31+/bin:/opt/applications/bioperl/1.6.924/gnu/bin:/opt/applications/bedtools/2.17.0/gnu/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/bin:/usr/lpp/mmfs/bin:/var/lib/gems/1.8/bin:/gpfs/home/rcthomps/opt/biopieces/bp_bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/var/lib/gems/1.8/bin:/gpfs/home/rcthomps/opt/biopieces/bp_bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/moreutils/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/.linuxbrew/Library/ENV/scm:/sbin" ldconfig -n /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib
 ----------------------------------------------------------------------
 Libraries have been installed in:
   /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib

 If you ever happen to want to link against installed libraries
 in a given directory, LIBDIR, you must either use libtool, and
 specify the full pathname of the library, or use the '-LLIBDIR'
 flag during linking and do at least one of the following:
   - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the 'LD_RUN_PATH' environment variable
     during linking
   - use the '-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to '/etc/ld.so.conf'

 See any operating system documentation about shared libraries for
 more information, such as the ld(1) and ld.so(8) manual pages.
 ----------------------------------------------------------------------
 /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
  /bin/sh ./libtool   --mode=install /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c pcre2grep pcre2test '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/pcre2grep /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin/pcre2grep
 libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/pcre2test /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin/pcre2test
 make[2]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
 make[1]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
diff --git a/config.log b/config.log
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.

 It was created by PCRE2 configure 10.20, which was
 generated by GNU Autoconf 2.69.  Invocation command line was

  $ ./configure --disable-dependency-tracking --prefix=/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20 --enable-pcre2-16 --enable-pcre2-32 --enable-pcre2grep-libz --enable-pcre2grep-libbz2 --enable-jit

 ## --------- ##
 ## Platform. ##
 ## --------- ##

 hostname = login01-adm
 uname -m = x86_64
 uname -r = 2.6.32-573.12.1.el6.x86_64
 uname -s = Linux
 uname -v = #1 SMP Tue Dec 15 21:19:08 UTC 2015

 /usr/bin/uname -p = unknown
 /bin/uname -X     = unknown

 /bin/arch              = x86_64
 /usr/bin/arch -k       = unknown
 /usr/convex/getsysinfo = unknown
 /usr/bin/hostinfo      = unknown
 /bin/machine           = unknown
 /usr/bin/oslevel       = unknown
 /bin/universe          = unknown

 PATH: /gpfs/home/rcthomps/.rbenv/versions/2.3.1/bin
 PATH: /gpfs/home/rcthomps/.rbenv/libexec
 PATH: /gpfs/home/rcthomps/.rbenv/plugins/ruby-build/bin
 PATH: /gpfs/home/rcthomps/usr/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/sbin
 PATH: /opt/applications/gmap/160501/gnu/bin
 PATH: /gpfs/home/rcthomps/bin
 PATH: /gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/bin
 PATH: /gpfs/home/rcthomps/.rbenv/shims
 PATH: /gpfs/home/rcthomps/.rbenv/bin
 PATH: /gpfs/home/rcthomps/perl5/perlbrew/bin
 PATH: /gpfs/home/rcthomps/perl5/perlbrew/perls/perl-5.16.0/bin
 PATH: /gpfs/home/rcthomps/opt/ucsc/bin
 PATH: /gpfs/home/rcthomps/usr/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/bin
 PATH: /gpfs/home/rcthomps/bin
 PATH: /gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/bin
 PATH: /gpfs/home/rcthomps/.rbenv/shims
 PATH: /gpfs/home/rcthomps/.rbenv/bin
 PATH: /gpfs/home/rcthomps/opt/ucsc/bin
 PATH: /gpfs/home/rcthomps/usr/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/bin
 PATH: /gpfs/home/rcthomps/bin
 PATH: /gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/bin
 PATH: /gpfs/home/rcthomps/.rbenv/shims
 PATH: /gpfs/home/rcthomps/.rbenv/bin
 PATH: /gpfs/home/rcthomps/opt/ucsc/bin
 PATH: /gpfs/home/rcthomps/usr/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/bin
 PATH: /gpfs/home/rcthomps/bin
 PATH: /gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/bin
 PATH: /gpfs/home/rcthomps/.rbenv/shims
 PATH: /gpfs/home/rcthomps/.rbenv/bin
 PATH: /gpfs/home/rcthomps/opt/ucsc/bin
 PATH: /gpfs/home/rcthomps/usr/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/bin
 PATH: /gpfs/home/rcthomps/.rbenv/shims
 PATH: /gpfs/home/rcthomps/.rbenv/bin
 PATH: /gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/bin
 PATH: /gpfs/home/rcthomps/bin
 PATH: /gpfs/home/rcthomps/usr/bin
 PATH: /gpfs/home/rcthomps/opt/ucsc/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/bin
 PATH: /gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/shims
 PATH: /gpfs/home/rcthomps/.pyenv/bin
 PATH: /gpfs/home/rcthomps/bin
 PATH: /gpfs/home/rcthomps/usr/bin
 PATH: /gpfs/home/rcthomps/opt/ucsc/bin
 PATH: /opt/applications/R/3.2.3/gnu/bin
 PATH: /opt/applications/tophat/2.1.0/gnu/bin
 PATH: /opt/applications/bowtie/1.1.2
 PATH: /opt/applications/star/2.5.1b/gnu/bin
 PATH: /opt/applications/vcftools/0.1.14/gnu/bin
 PATH: /opt/applications/tabix/0.2.6/gnu
 PATH: /opt/applications/bamtools/2.4.0/gnu/bin
 PATH: /opt/applications/samtools/1.3/gnu/bin
 PATH: /opt/applications/picard/2.1.0/bin
 PATH: /opt/applications/java/jdk1.8.0_65/bin
 PATH: /opt/applications/ant/apache-ant-1.9.0/bin
 PATH: /opt/applications/fastx/0.0.14/gnu/bin
 PATH: /opt/applications/cufflinks/2.2.1/bin
 PATH: /opt/applications/clustalw/2.1/gnu/bin
 PATH: /opt/applications/bwa/0.7.12/gnu/bin
 PATH: /opt/applications/blast/2.2.31+/bin
 PATH: /opt/applications/bioperl/1.6.924/gnu/bin
 PATH: /opt/applications/bedtools/2.17.0/gnu/bin
 PATH: /usr/lib64/qt-3.3/bin
 PATH: /usr/local/bin
 PATH: /bin
 PATH: /usr/bin
 PATH: /usr/local/sbin
 PATH: /usr/sbin
 PATH: /sbin
 PATH: /usr/local/bin
 PATH: /usr/lpp/mmfs/bin
 PATH: /var/lib/gems/1.8/bin
 PATH: /gpfs/home/rcthomps/opt/biopieces/bp_bin
 PATH: /gpfs/home/rcthomps/opt/fseq/bin
 PATH: /gpfs/home/rcthomps/opt/ucsc/bin
 PATH: /gpfs/home/rcthomps/opt/pbstools/bin
 PATH: /var/lib/gems/1.8/bin
 PATH: /gpfs/home/rcthomps/opt/biopieces/bp_bin
 PATH: /gpfs/home/rcthomps/opt/fseq/bin
 PATH: /gpfs/home/rcthomps/opt/pbstools/bin
 PATH: /gpfs/home/rcthomps/opt/fseq/bin
 PATH: /gpfs/home/rcthomps/opt/pbstools/bin
 PATH: /gpfs/home/rcthomps/opt/fseq/bin
 PATH: /gpfs/home/rcthomps/opt/pbstools/bin
 PATH: /gpfs/home/rcthomps/opt/fseq/bin
 PATH: /gpfs/home/rcthomps/opt/pbstools/bin
 PATH: /gpfs/home/rcthomps/opt/fseq/bin
 PATH: /gpfs/home/rcthomps/opt/pbstools/bin
 PATH: /gpfs/home/rcthomps/opt/moreutils/bin
 PATH: /gpfs/home/rcthomps/opt/fseq/bin
 PATH: /gpfs/home/rcthomps/opt/pbstools/bin
 PATH: /gpfs/home/rcthomps/.linuxbrew/Library/ENV/scm


 ## ----------- ##
 ## Core tests. ##
 ## ----------- ##

 configure:2527: checking for a BSD-compatible install
 configure:2595: result: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c
 configure:2606: checking whether build environment is sane
 configure:2661: result: yes
 configure:2812: checking for a thread-safe mkdir -p
 configure:2851: result: /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p
 configure:2858: checking for gawk
 configure:2874: found /bin/gawk
 configure:2885: result: gawk
 configure:2896: checking whether make sets $(MAKE)
 configure:2918: result: yes
 configure:2947: checking whether make supports nested variables
 configure:2964: result: yes
 configure:3101: checking whether make supports nested variables
 configure:3118: result: yes
 configure:3145: checking for style of include used by make
 configure:3173: result: GNU
 configure:3244: checking for gcc
 configure:3271: result: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 configure:3500: checking for C compiler version
 configure:3509: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 --version >&5
 gcc-5 (Homebrew gcc 5.3.0) 5.3.0
 Copyright (C) 2015 Free Software Foundation, Inc.
 This is free software; see the source for copying conditions.  There is NO
 warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

 configure:3520: $? = 0
 configure:3509: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -v >&5
 Reading specs from /gpfs/home/rcthomps/.linuxbrew/Cellar/gcc/5.3.0/bin/../lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs
 COLLECT_GCC=/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 COLLECT_LTO_WRAPPER=/gpfs/home/rcthomps/.linuxbrew/Cellar/gcc/5.3.0/bin/../libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper
 Target: x86_64-unknown-linux-gnu
 Configured with: ../configure --prefix=/home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0  --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/home/linuxbrew/.linuxbrew/opt/gmp --with-mpfr=/home/linuxbrew/.linuxbrew/opt/mpfr --with-mpc=/home/linuxbrew/.linuxbrew/opt/libmpc --with-isl=/home/linuxbrew/.linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib
 Thread model: posix
 gcc version 5.3.0 (Homebrew gcc 5.3.0) 
 configure:3520: $? = 0
 configure:3509: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -V >&5
 gcc-5: error: unrecognized command line option '-V'
 gcc-5: fatal error: no input files
 compilation terminated.
 configure:3520: $? = 1
 configure:3509: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -qversion >&5
 gcc-5: error: unrecognized command line option '-qversion'
 gcc-5: fatal error: no input files
 compilation terminated.
 configure:3520: $? = 1
 configure:3540: checking whether the C compiler works
 configure:3562: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  >&5
 configure:3566: $? = 0
 configure:3614: result: yes
 configure:3617: checking for C compiler default output file name
 configure:3619: result: a.out
 configure:3625: checking for suffix of executables
 configure:3632: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  >&5
 configure:3636: $? = 0
 configure:3658: result: 
 configure:3680: checking whether we are cross compiling
 configure:3688: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  >&5
 configure:3692: $? = 0
 configure:3699: ./conftest
 configure:3703: $? = 0
 configure:3718: result: no
 configure:3723: checking for suffix of object files
 configure:3745: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:3749: $? = 0
 configure:3770: result: o
 configure:3774: checking whether we are using the GNU C compiler
 configure:3793: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:3793: $? = 0
 configure:3802: result: yes
 configure:3811: checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 accepts -g
 configure:3831: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -g -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:3831: $? = 0
 configure:3872: result: yes
 configure:3889: checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to accept ISO C89
 configure:3952: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5  -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:3952: $? = 0
 configure:3965: result: none needed
 configure:3990: checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 understands -c and -o together
 configure:4012: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c conftest.c -o conftest2.o
 configure:4015: $? = 0
 configure:4012: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c conftest.c -o conftest2.o
 configure:4015: $? = 0
 configure:4027: result: yes
 configure:4046: checking dependency style of /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 configure:4157: result: none
 configure:4222: checking for ar
 configure:4238: found /gpfs/home/rcthomps/.linuxbrew/bin/ar
 configure:4249: result: ar
 configure:4275: checking the archiver (ar) interface
 configure:4291: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:4291: $? = 0
 configure:4293: ar cru libconftest.a conftest.o >&5
 configure:4296: $? = 0
 configure:4324: result: ar
 configure:4406: checking for gcc
 configure:4433: result: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 configure:4662: checking for C compiler version
 configure:4671: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 --version >&5
 gcc-5 (Homebrew gcc 5.3.0) 5.3.0
 Copyright (C) 2015 Free Software Foundation, Inc.
 This is free software; see the source for copying conditions.  There is NO
 warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

 configure:4682: $? = 0
 configure:4671: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -v >&5
 Reading specs from /gpfs/home/rcthomps/.linuxbrew/Cellar/gcc/5.3.0/bin/../lib/gcc/x86_64-unknown-linux-gnu/5.3.0/specs
 COLLECT_GCC=/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 COLLECT_LTO_WRAPPER=/gpfs/home/rcthomps/.linuxbrew/Cellar/gcc/5.3.0/bin/../libexec/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper
 Target: x86_64-unknown-linux-gnu
 Configured with: ../configure --prefix=/home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0  --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/home/linuxbrew/.linuxbrew/opt/gmp --with-mpfr=/home/linuxbrew/.linuxbrew/opt/mpfr --with-mpc=/home/linuxbrew/.linuxbrew/opt/libmpc --with-isl=/home/linuxbrew/.linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --disable-multilib
 Thread model: posix
 gcc version 5.3.0 (Homebrew gcc 5.3.0) 
 configure:4682: $? = 0
 configure:4671: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -V >&5
 gcc-5: error: unrecognized command line option '-V'
 gcc-5: fatal error: no input files
 compilation terminated.
 configure:4682: $? = 1
 configure:4671: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -qversion >&5
 gcc-5: error: unrecognized command line option '-qversion'
 gcc-5: fatal error: no input files
 compilation terminated.
 configure:4682: $? = 1
 configure:4686: checking whether we are using the GNU C compiler
 configure:4714: result: yes
 configure:4723: checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 accepts -g
 configure:4784: result: yes
 configure:4801: checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to accept ISO C89
 configure:4877: result: none needed
 configure:4902: checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 understands -c and -o together
 configure:4939: result: yes
 configure:4958: checking dependency style of /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 configure:5069: result: none
 configure:5103: checking how to run the C preprocessor
 configure:5134: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 configure:5134: $? = 0
 configure:5148: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
 compilation terminated.
 configure:5148: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | /* end confdefs.h.  */
 | #include <ac_nonexistent.h>
 configure:5173: result: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E
 configure:5193: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 configure:5193: $? = 0
 configure:5207: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
 compilation terminated.
 configure:5207: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | /* end confdefs.h.  */
 | #include <ac_nonexistent.h>
 configure:5236: checking for grep that handles long lines and -e
 configure:5294: result: /bin/grep
 configure:5299: checking for egrep
 configure:5361: result: /bin/grep -E
 configure:5366: checking for ANSI C header files
 configure:5386: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5386: $? = 0
 configure:5459: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  >&5
 configure:5459: $? = 0
 configure:5459: ./conftest
 configure:5459: $? = 0
 configure:5470: result: yes
 configure:5483: checking for sys/types.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for sys/stat.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for stdlib.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for string.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for memory.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for strings.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for inttypes.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for stdint.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5483: checking for unistd.h
 configure:5483: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5483: $? = 0
 configure:5483: result: yes
 configure:5495: checking for int64_t
 configure:5495: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:5495: $? = 0
 configure:5495: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 conftest.c: In function 'main':
 conftest.c:58:12: error: storage size of 'test_array' isn't constant
 static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1)
            ^
 configure:5495: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | /* end confdefs.h.  */
 | #include <stdio.h>
 | #ifdef HAVE_SYS_TYPES_H
 | # include <sys/types.h>
 | #endif
 | #ifdef HAVE_SYS_STAT_H
 | # include <sys/stat.h>
 | #endif
 | #ifdef STDC_HEADERS
 | # include <stdlib.h>
 | # include <stddef.h>
 | #else
 | # ifdef HAVE_STDLIB_H
 | #  include <stdlib.h>
 | # endif
 | #endif
 | #ifdef HAVE_STRING_H
 | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
 | #  include <memory.h>
 | # endif
 | # include <string.h>
 | #endif
 | #ifdef HAVE_STRINGS_H
 | # include <strings.h>
 | #endif
 | #ifdef HAVE_INTTYPES_H
 | # include <inttypes.h>
 | #endif
 | #ifdef HAVE_STDINT_H
 | # include <stdint.h>
 | #endif
 | #ifdef HAVE_UNISTD_H
 | # include <unistd.h>
 | #endif
 | 	        enum { N = 64 / 2 - 1 };
 | int
 | main ()
 | {
 | static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1)
 | 		 < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))];
 | test_array [0] = 0;
 | return test_array [0];
 | 
 |   ;
 |   return 0;
 | }
 configure:5495: result: yes
 configure:5512: checking build system type
 configure:5526: result: x86_64-unknown-linux-gnu
 configure:5546: checking host system type
 configure:5559: result: x86_64-unknown-linux-gnu
 configure:5928: checking how to print strings
 configure:5955: result: printf
 configure:5976: checking for a sed that does not truncate output
 configure:6040: result: /gpfs/home/rcthomps/.linuxbrew/bin/sed
 configure:6058: checking for fgrep
 configure:6120: result: /bin/grep -F
 configure:6155: checking for ld used by /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 configure:6222: result: /gpfs/home/rcthomps/.linuxbrew/bin/ld
 configure:6229: checking if the linker (/gpfs/home/rcthomps/.linuxbrew/bin/ld) is GNU ld
 configure:6244: result: yes
 configure:6256: checking for BSD- or MS-compatible name lister (nm)
 configure:6310: result: /gpfs/home/rcthomps/.linuxbrew/bin/nm -B
 configure:6440: checking the name lister (/gpfs/home/rcthomps/.linuxbrew/bin/nm -B) interface
 configure:6447: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:6450: /gpfs/home/rcthomps/.linuxbrew/bin/nm -B "conftest.o"
 configure:6453: output
 0000000000000000 B some_variable
 configure:6460: result: BSD nm
 configure:6463: checking whether ln -s works
 configure:6467: result: yes
 configure:6475: checking the maximum length of command line arguments
 configure:6606: result: 1966080
 configure:6654: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
 configure:6694: result: func_convert_file_noop
 configure:6701: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
 configure:6721: result: func_convert_file_noop
 configure:6728: checking for /gpfs/home/rcthomps/.linuxbrew/bin/ld option to reload object files
 configure:6735: result: -r
 configure:6809: checking for objdump
 configure:6836: result: objdump
 configure:6865: checking how to recognize dependent libraries
 configure:7065: result: pass_all
 configure:7150: checking for dlltool
 configure:7177: result: dlltool
 configure:7207: checking how to associate runtime and link libraries
 configure:7234: result: printf %s\n
 configure:7358: checking for archiver @FILE support
 configure:7375: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:7375: $? = 0
 configure:7378: ar cru libconftest.a @conftest.lst >&5
 configure:7381: $? = 0
 configure:7386: ar cru libconftest.a @conftest.lst >&5
 ar: conftest.o: No such file or directory
 configure:7389: $? = 1
 configure:7401: result: @
 configure:7459: checking for strip
 configure:7475: found /gpfs/home/rcthomps/.linuxbrew/bin/strip
 configure:7486: result: strip
 configure:7558: checking for ranlib
 configure:7574: found /gpfs/home/rcthomps/.linuxbrew/bin/ranlib
 configure:7585: result: ranlib
 configure:7687: checking command to parse /gpfs/home/rcthomps/.linuxbrew/bin/nm -B output from /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 object
 configure:7840: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:7843: $? = 0
 configure:7847: /gpfs/home/rcthomps/.linuxbrew/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
 configure:7850: $? = 0
 configure:7916: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c conftstm.o >&5
 configure:7919: $? = 0
 configure:7957: result: ok
 configure:8004: checking for sysroot
 configure:8034: result: no
 configure:8041: checking for a working dd
 configure:8079: result: /gpfs/home/rcthomps/.linuxbrew/bin/dd
 configure:8083: checking how to truncate binary pipes
 configure:8098: result: /gpfs/home/rcthomps/.linuxbrew/bin/dd bs=4096 count=1
 configure:8234: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:8237: $? = 0
 configure:8427: checking for mt
 configure:8457: result: no
 configure:8477: checking if : is a manifest tool
 configure:8483: : '-?'
 configure:8491: result: no
 configure:9165: checking for dlfcn.h
 configure:9165: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:9165: $? = 0
 configure:9165: result: yes
 configure:9419: checking for objdir
 configure:9434: result: .libs
 configure:9698: checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -fno-rtti -fno-exceptions
 configure:9716: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -fno-rtti -fno-exceptions conftest.c >&5
 configure:9720: $? = 0
 configure:9733: result: yes
 configure:10091: checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to produce PIC
 configure:10098: result: -fPIC -DPIC
 configure:10106: checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 PIC flag -fPIC -DPIC works
 configure:10124: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -fPIC -DPIC -DPIC conftest.c >&5
 configure:10128: $? = 0
 configure:10141: result: yes
 configure:10170: checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 static flag -static works
 configure:10198: result: yes
 configure:10213: checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -c -o file.o
 configure:10234: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -o out/conftest2.o conftest.c >&5
 configure:10238: $? = 0
 configure:10260: result: yes
 configure:10268: checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -c -o file.o
 configure:10315: result: yes
 configure:10348: checking whether the /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 linker (/gpfs/home/rcthomps/.linuxbrew/bin/ld -m elf_x86_64) supports shared libraries
 configure:11607: result: yes
 configure:11644: checking whether -lc should be explicitly linked in
 configure:11652: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:11655: $? = 0
 configure:11670: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
 configure:11673: $? = 0
 configure:11687: result: no
 configure:11847: checking dynamic linker characteristics
 configure:12428: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib -Wl,-rpath -Wl,/foo conftest.c  >&5
 configure:12428: $? = 0
 configure:12665: result: GNU/Linux ld.so
 configure:12787: checking how to hardcode library paths into programs
 configure:12812: result: immediate
 configure:13360: checking whether stripping libraries is possible
 configure:13365: result: yes
 configure:13400: checking if libtool supports shared libraries
 configure:13402: result: yes
 configure:13405: checking whether to build shared libraries
 configure:13430: result: yes
 configure:13433: checking whether to build static libraries
 configure:13437: result: yes
 configure:13474: checking whether ln -s works
 configure:13478: result: yes
 configure:13494: checking whether the -Werror option is usable
 configure:13513: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -Werror -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:13513: $? = 0
 configure:13522: result: yes
 configure:13524: checking for simple visibility declarations
 configure:13551: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -fvisibility=hidden -Werror -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:13551: $? = 0
 configure:13560: result: yes
 configure:13969: checking for ANSI C header files
 configure:14073: result: yes
 configure:14084: checking limits.h usability
 configure:14084: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:14084: $? = 0
 configure:14084: result: yes
 configure:14084: checking limits.h presence
 configure:14084: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 configure:14084: $? = 0
 configure:14084: result: yes
 configure:14084: checking for limits.h
 configure:14084: result: yes
 configure:14084: checking for sys/types.h
 configure:14084: result: yes
 configure:14084: checking for sys/stat.h
 configure:14084: result: yes
 configure:14084: checking dirent.h usability
 configure:14084: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:14084: $? = 0
 configure:14084: result: yes
 configure:14084: checking dirent.h presence
 configure:14084: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 configure:14084: $? = 0
 configure:14084: result: yes
 configure:14084: checking for dirent.h
 configure:14084: result: yes
 configure:14096: checking windows.h usability
 configure:14096: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 conftest.c:66:21: fatal error: windows.h: No such file or directory
 compilation terminated.
 configure:14096: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | /* end confdefs.h.  */
 | #include <stdio.h>
 | #ifdef HAVE_SYS_TYPES_H
 | # include <sys/types.h>
 | #endif
 | #ifdef HAVE_SYS_STAT_H
 | # include <sys/stat.h>
 | #endif
 | #ifdef STDC_HEADERS
 | # include <stdlib.h>
 | # include <stddef.h>
 | #else
 | # ifdef HAVE_STDLIB_H
 | #  include <stdlib.h>
 | # endif
 | #endif
 | #ifdef HAVE_STRING_H
 | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
 | #  include <memory.h>
 | # endif
 | # include <string.h>
 | #endif
 | #ifdef HAVE_STRINGS_H
 | # include <strings.h>
 | #endif
 | #ifdef HAVE_INTTYPES_H
 | # include <inttypes.h>
 | #endif
 | #ifdef HAVE_STDINT_H
 | # include <stdint.h>
 | #endif
 | #ifdef HAVE_UNISTD_H
 | # include <unistd.h>
 | #endif
 | #include <windows.h>
 configure:14096: result: no
 configure:14096: checking windows.h presence
 configure:14096: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 conftest.c:33:21: fatal error: windows.h: No such file or directory
 compilation terminated.
 configure:14096: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | /* end confdefs.h.  */
 | #include <windows.h>
 configure:14096: result: no
 configure:14096: checking for windows.h
 configure:14096: result: no
 configure:14175: checking for an ANSI C-conforming const
 configure:14241: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:14241: $? = 0
 configure:14248: result: yes
 configure:14256: checking for size_t
 configure:14256: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:14256: $? = 0
 configure:14256: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 conftest.c: In function 'main':
 conftest.c:69:21: error: expected expression before ')' token
 if (sizeof ((size_t)))
                     ^
 configure:14256: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | /* end confdefs.h.  */
 | #include <stdio.h>
 | #ifdef HAVE_SYS_TYPES_H
 | # include <sys/types.h>
 | #endif
 | #ifdef HAVE_SYS_STAT_H
 | # include <sys/stat.h>
 | #endif
 | #ifdef STDC_HEADERS
 | # include <stdlib.h>
 | # include <stddef.h>
 | #else
 | # ifdef HAVE_STDLIB_H
 | #  include <stdlib.h>
 | # endif
 | #endif
 | #ifdef HAVE_STRING_H
 | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
 | #  include <memory.h>
 | # endif
 | # include <string.h>
 | #endif
 | #ifdef HAVE_STRINGS_H
 | # include <strings.h>
 | #endif
 | #ifdef HAVE_INTTYPES_H
 | # include <inttypes.h>
 | #endif
 | #ifdef HAVE_STDINT_H
 | # include <stdint.h>
 | #endif
 | #ifdef HAVE_UNISTD_H
 | # include <unistd.h>
 | #endif
 | int
 | main ()
 | {
 | if (sizeof ((size_t)))
 | 	    return 0;
 |   ;
 |   return 0;
 | }
 configure:14256: result: yes
 configure:14273: checking for bcopy
 configure:14273: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  >&5
 configure:14273: $? = 0
 configure:14273: result: yes
 configure:14273: checking for memmove
 configure:14273: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  >&5
 configure:14273: $? = 0
 configure:14273: result: yes
 configure:14273: checking for strerror
 configure:14273: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  >&5
 configure:14273: $? = 0
 configure:14273: result: yes
 configure:14287: checking zlib.h usability
 configure:14287: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:14287: $? = 0
 configure:14287: result: yes
 configure:14287: checking zlib.h presence
 configure:14287: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 configure:14287: $? = 0
 configure:14287: result: yes
 configure:14287: checking for zlib.h
 configure:14287: result: yes
 configure:14297: checking for gzopen in -lz
 configure:14322: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c -lz   >&5
 configure:14322: $? = 0
 configure:14331: result: yes
 configure:14356: checking bzlib.h usability
 configure:14356: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -c -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c >&5
 configure:14356: $? = 0
 configure:14356: result: yes
 configure:14356: checking bzlib.h presence
 configure:14356: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E -isystem/gpfs/home/rcthomps/.linuxbrew/include conftest.c
 configure:14356: $? = 0
 configure:14356: result: yes
 configure:14356: checking for bzlib.h
 configure:14356: result: yes
 configure:14371: checking for libbz2
 configure:14389: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c  -lbz2 >&5
 configure:14389: $? = 0
 configure:14390: result: yes
 configure:14982: checking for the pthreads library -lpthreads
 configure:15020: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native  -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c -lpthreads  >&5
 /gpfs/home/rcthomps/.linuxbrew/bin/ld: cannot find -lpthreads
 collect2: error: ld returned 1 exit status
 configure:15020: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | #define HAVE_BCOPY 1
 | #define HAVE_MEMMOVE 1
 | #define HAVE_STRERROR 1
 | #define HAVE_ZLIB_H 1
 | #define HAVE_BZLIB_H 1
 | #define SUPPORT_PCRE2_8 /**/
 | #define SUPPORT_PCRE2_16 /**/
 | #define SUPPORT_PCRE2_32 /**/
 | /* end confdefs.h.  */
 | #include <pthread.h>
 |                         static void routine(void *a) { a = 0; }
 |                         static void *start_routine(void *a) { return a; }
 | int
 | main ()
 | {
 | pthread_t th; pthread_attr_t attr;
 |                         pthread_create(&th, 0, start_routine, 0);
 |                         pthread_join(th, 0);
 |                         pthread_attr_init(&attr);
 |                         pthread_cleanup_push(routine, 0);
 |                         pthread_cleanup_pop(0) /* ; */
 |   ;
 |   return 0;
 | }
 configure:15029: result: no
 configure:14927: checking whether pthreads work without any flags
 configure:15020: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native  -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c   >&5
 /tmp/ccCsg39G.o: In function `main':
 conftest.c:(.text.startup+0x14): undefined reference to `pthread_create'
 conftest.c:(.text.startup+0x1f): undefined reference to `pthread_join'
 conftest.c:(.text.startup+0x54): undefined reference to `__pthread_register_cancel'
 conftest.c:(.text.startup+0x5e): undefined reference to `__pthread_unregister_cancel'
 collect2: error: ld returned 1 exit status
 configure:15020: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | #define HAVE_BCOPY 1
 | #define HAVE_MEMMOVE 1
 | #define HAVE_STRERROR 1
 | #define HAVE_ZLIB_H 1
 | #define HAVE_BZLIB_H 1
 | #define SUPPORT_PCRE2_8 /**/
 | #define SUPPORT_PCRE2_16 /**/
 | #define SUPPORT_PCRE2_32 /**/
 | /* end confdefs.h.  */
 | #include <pthread.h>
 |                         static void routine(void *a) { a = 0; }
 |                         static void *start_routine(void *a) { return a; }
 | int
 | main ()
 | {
 | pthread_t th; pthread_attr_t attr;
 |                         pthread_create(&th, 0, start_routine, 0);
 |                         pthread_join(th, 0);
 |                         pthread_attr_init(&attr);
 |                         pthread_cleanup_push(routine, 0);
 |                         pthread_cleanup_pop(0) /* ; */
 |   ;
 |   return 0;
 | }
 configure:15029: result: no
 configure:14932: checking whether pthreads work with -Kthread
 configure:15020: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -Kthread -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c   >&5
 gcc-5: error: unrecognized command line option '-Kthread'
 configure:15020: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | #define HAVE_BCOPY 1
 | #define HAVE_MEMMOVE 1
 | #define HAVE_STRERROR 1
 | #define HAVE_ZLIB_H 1
 | #define HAVE_BZLIB_H 1
 | #define SUPPORT_PCRE2_8 /**/
 | #define SUPPORT_PCRE2_16 /**/
 | #define SUPPORT_PCRE2_32 /**/
 | /* end confdefs.h.  */
 | #include <pthread.h>
 |                         static void routine(void *a) { a = 0; }
 |                         static void *start_routine(void *a) { return a; }
 | int
 | main ()
 | {
 | pthread_t th; pthread_attr_t attr;
 |                         pthread_create(&th, 0, start_routine, 0);
 |                         pthread_join(th, 0);
 |                         pthread_attr_init(&attr);
 |                         pthread_cleanup_push(routine, 0);
 |                         pthread_cleanup_pop(0) /* ; */
 |   ;
 |   return 0;
 | }
 configure:15029: result: no
 configure:14932: checking whether pthreads work with -kthread
 configure:15020: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -kthread -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c   >&5
 gcc-5: error: unrecognized command line option '-kthread'
 configure:15020: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | #define HAVE_BCOPY 1
 | #define HAVE_MEMMOVE 1
 | #define HAVE_STRERROR 1
 | #define HAVE_ZLIB_H 1
 | #define HAVE_BZLIB_H 1
 | #define SUPPORT_PCRE2_8 /**/
 | #define SUPPORT_PCRE2_16 /**/
 | #define SUPPORT_PCRE2_32 /**/
 | /* end confdefs.h.  */
 | #include <pthread.h>
 |                         static void routine(void *a) { a = 0; }
 |                         static void *start_routine(void *a) { return a; }
 | int
 | main ()
 | {
 | pthread_t th; pthread_attr_t attr;
 |                         pthread_create(&th, 0, start_routine, 0);
 |                         pthread_join(th, 0);
 |                         pthread_attr_init(&attr);
 |                         pthread_cleanup_push(routine, 0);
 |                         pthread_cleanup_pop(0) /* ; */
 |   ;
 |   return 0;
 | }
 configure:15029: result: no
 configure:14982: checking for the pthreads library -llthread
 configure:15020: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native  -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c -llthread  >&5
 /gpfs/home/rcthomps/.linuxbrew/bin/ld: cannot find -llthread
 collect2: error: ld returned 1 exit status
 configure:15020: $? = 1
 configure: failed program was:
 | /* confdefs.h */
 | #define PACKAGE_NAME "PCRE2"
 | #define PACKAGE_TARNAME "pcre2"
 | #define PACKAGE_VERSION "10.20"
 | #define PACKAGE_STRING "PCRE2 10.20"
 | #define PACKAGE_BUGREPORT ""
 | #define PACKAGE_URL ""
 | #define PACKAGE "pcre2"
 | #define VERSION "10.20"
 | #define STDC_HEADERS 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_STDLIB_H 1
 | #define HAVE_STRING_H 1
 | #define HAVE_MEMORY_H 1
 | #define HAVE_STRINGS_H 1
 | #define HAVE_INTTYPES_H 1
 | #define HAVE_STDINT_H 1
 | #define HAVE_UNISTD_H 1
 | #define HAVE_DLFCN_H 1
 | #define LT_OBJDIR ".libs/"
 | #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 | #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 | #define HAVE_VISIBILITY 1
 | #define STDC_HEADERS 1
 | #define HAVE_LIMITS_H 1
 | #define HAVE_SYS_TYPES_H 1
 | #define HAVE_SYS_STAT_H 1
 | #define HAVE_DIRENT_H 1
 | #define HAVE_BCOPY 1
 | #define HAVE_MEMMOVE 1
 | #define HAVE_STRERROR 1
 | #define HAVE_ZLIB_H 1
 | #define HAVE_BZLIB_H 1
 | #define SUPPORT_PCRE2_8 /**/
 | #define SUPPORT_PCRE2_16 /**/
 | #define SUPPORT_PCRE2_32 /**/
 | /* end confdefs.h.  */
 | #include <pthread.h>
 |                         static void routine(void *a) { a = 0; }
 |                         static void *start_routine(void *a) { return a; }
 | int
 | main ()
 | {
 | pthread_t th; pthread_attr_t attr;
 |                         pthread_create(&th, 0, start_routine, 0);
 |                         pthread_join(th, 0);
 |                         pthread_attr_init(&attr);
 |                         pthread_cleanup_push(routine, 0);
 |                         pthread_cleanup_pop(0) /* ; */
 |   ;
 |   return 0;
 | }
 configure:15029: result: no
 configure:14932: checking whether pthreads work with -pthread
 configure:15020: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -pthread -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c   >&5
 configure:15020: $? = 0
 configure:15029: result: yes
 configure:15048: checking for joinable pthread attribute
 configure:15063: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -pthread -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c   >&5
 configure:15063: $? = 0
 configure:15069: result: PTHREAD_CREATE_JOINABLE
 configure:15079: checking if more special flags are required for pthreads
 configure:15093: result: no
 configure:15099: checking for PTHREAD_PRIO_INHERIT
 configure:15117: /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -o conftest -Os -w -pipe -march=native -pthread -isystem/gpfs/home/rcthomps/.linuxbrew/include -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib conftest.c   >&5
 configure:15117: $? = 0
 configure:15126: result: yes
 configure:15955: checking that generated files are newer than configure
 configure:15961: result: done
 configure:16024: creating ./config.status

 ## ---------------------- ##
 ## Running config.status. ##
 ## ---------------------- ##

 This file was extended by PCRE2 config.status 10.20, which was
 generated by GNU Autoconf 2.69.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

 on login01-adm

 config.status:1178: creating Makefile
 config.status:1178: creating libpcre2-8.pc
 config.status:1178: creating libpcre2-16.pc
 config.status:1178: creating libpcre2-32.pc
 config.status:1178: creating libpcre2-posix.pc
 config.status:1178: creating pcre2-config
 config.status:1178: creating src/pcre2.h
 config.status:1178: creating src/config.h
 config.status:1407: executing depfiles commands
 config.status:1407: executing libtool commands
 config.status:1407: executing script-chmod commands
 config.status:1407: executing delete-old-chartables commands

 ## ---------------- ##
 ## Cache variables. ##
 ## ---------------- ##

 ac_cv_build=x86_64-unknown-linux-gnu
 ac_cv_c_compiler_gnu=yes
 ac_cv_c_const=yes
 ac_cv_c_int64_t=yes
 ac_cv_env_CC_set=set
 ac_cv_env_CC_value=/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 ac_cv_env_CFLAGS_set=set
 ac_cv_env_CFLAGS_value='-Os -w -pipe -march=native'
 ac_cv_env_CPPFLAGS_set=set
 ac_cv_env_CPPFLAGS_value=-isystem/gpfs/home/rcthomps/.linuxbrew/include
 ac_cv_env_CPP_set=
 ac_cv_env_CPP_value=
 ac_cv_env_GENHTML_set=
 ac_cv_env_GENHTML_value=
 ac_cv_env_LCOV_set=
 ac_cv_env_LCOV_value=
 ac_cv_env_LDFLAGS_set=set
 ac_cv_env_LDFLAGS_value='-L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib'
 ac_cv_env_LIBS_set=
 ac_cv_env_LIBS_value=
 ac_cv_env_LT_SYS_LIBRARY_PATH_set=
 ac_cv_env_LT_SYS_LIBRARY_PATH_value=
 ac_cv_env_PKG_CONFIG_LIBDIR_set=set
 ac_cv_env_PKG_CONFIG_LIBDIR_value=/gpfs/home/rcthomps/.linuxbrew/lib/pkgconfig
 ac_cv_env_PKG_CONFIG_PATH_set=
 ac_cv_env_PKG_CONFIG_PATH_value=
 ac_cv_env_PKG_CONFIG_set=
 ac_cv_env_PKG_CONFIG_value=
 ac_cv_env_VALGRIND_CFLAGS_set=
 ac_cv_env_VALGRIND_CFLAGS_value=
 ac_cv_env_VALGRIND_LIBS_set=
 ac_cv_env_VALGRIND_LIBS_value=
 ac_cv_env_build_alias_set=
 ac_cv_env_build_alias_value=
 ac_cv_env_host_alias_set=
 ac_cv_env_host_alias_value=
 ac_cv_env_target_alias_set=
 ac_cv_env_target_alias_value=
 ac_cv_func_bcopy=yes
 ac_cv_func_memmove=yes
 ac_cv_func_strerror=yes
 ac_cv_header_bzlib_h=yes
 ac_cv_header_dirent_h=yes
 ac_cv_header_dlfcn_h=yes
 ac_cv_header_inttypes_h=yes
 ac_cv_header_limits_h=yes
 ac_cv_header_memory_h=yes
 ac_cv_header_stdc=yes
 ac_cv_header_stdint_h=yes
 ac_cv_header_stdlib_h=yes
 ac_cv_header_string_h=yes
 ac_cv_header_strings_h=yes
 ac_cv_header_sys_stat_h=yes
 ac_cv_header_sys_types_h=yes
 ac_cv_header_unistd_h=yes
 ac_cv_header_windows_h=no
 ac_cv_header_zlib_h=yes
 ac_cv_host=x86_64-unknown-linux-gnu
 ac_cv_lib_z_gzopen=yes
 ac_cv_objext=o
 ac_cv_path_EGREP='/bin/grep -E'
 ac_cv_path_FGREP='/bin/grep -F'
 ac_cv_path_GREP=/bin/grep
 ac_cv_path_SED=/gpfs/home/rcthomps/.linuxbrew/bin/sed
 ac_cv_path_install='/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c'
 ac_cv_path_lt_DD=/gpfs/home/rcthomps/.linuxbrew/bin/dd
 ac_cv_path_mkdir=/gpfs/home/rcthomps/.linuxbrew/bin/mkdir
 ac_cv_prog_AWK=gawk
 ac_cv_prog_CPP='/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E'
 ac_cv_prog_ac_ct_AR=ar
 ac_cv_prog_ac_ct_CC=/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
 ac_cv_prog_ac_ct_DLLTOOL=dlltool
 ac_cv_prog_ac_ct_OBJDUMP=objdump
 ac_cv_prog_ac_ct_RANLIB=ranlib
 ac_cv_prog_ac_ct_STRIP=strip
 ac_cv_prog_cc_c89=
 ac_cv_prog_cc_g=yes
 ac_cv_prog_make_make_set=yes
 ac_cv_type_size_t=yes
 am_cv_CC_dependencies_compiler_type=none
 am_cv_ar_interface=ar
 am_cv_make_support_nested_variables=yes
 am_cv_prog_cc_c_o=yes
 ax_cv_PTHREAD_PRIO_INHERIT=yes
 lt_cv_ar_at_file=@
 lt_cv_archive_cmds_need_lc=no
 lt_cv_deplibs_check_method=pass_all
 lt_cv_file_magic_cmd='$MAGIC_CMD'
 lt_cv_file_magic_test_file=
 lt_cv_ld_reload_flag=-r
 lt_cv_nm_interface='BSD nm'
 lt_cv_objdir=.libs
 lt_cv_path_LD=/gpfs/home/rcthomps/.linuxbrew/bin/ld
 lt_cv_path_NM='/gpfs/home/rcthomps/.linuxbrew/bin/nm -B'
 lt_cv_path_mainfest_tool=no
 lt_cv_prog_compiler_c_o=yes
 lt_cv_prog_compiler_pic='-fPIC -DPIC'
 lt_cv_prog_compiler_pic_works=yes
 lt_cv_prog_compiler_rtti_exceptions=yes
 lt_cv_prog_compiler_static_works=yes
 lt_cv_prog_gnu_ld=yes
 lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
 lt_cv_shlibpath_overrides_runpath=no
 lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
 lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"\1", (void *) \&\1},/p'\'''
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/  {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"lib\1", (void *) \&\1},/p'\'''
 lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
 lt_cv_sys_global_symbol_to_import=
 lt_cv_sys_max_cmd_len=1966080
 lt_cv_to_host_file_cmd=func_convert_file_noop
 lt_cv_to_tool_file_cmd=func_convert_file_noop
 lt_cv_truncate_bin='/gpfs/home/rcthomps/.linuxbrew/bin/dd bs=4096 count=1'
 pcre2_cv_cc_vis_werror=yes
 pcre2_cv_cc_visibility=yes

 ## ----------------- ##
 ## Output variables. ##
 ## ----------------- ##

 ACLOCAL='${SHELL} /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/missing aclocal-1.15'
 AMDEPBACKSLASH=''
 AMDEP_FALSE=''
 AMDEP_TRUE='#'
 AMTAR='$${TAR-tar}'
 AM_BACKSLASH='\'
 AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
 AM_DEFAULT_VERBOSITY='0'
 AM_V='$(V)'
 AR='ar'
 AS='as'
 AUTOCONF='${SHELL} /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/missing autoconf'
 AUTOHEADER='${SHELL} /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/missing autoheader'
 AUTOMAKE='${SHELL} /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/missing automake-1.15'
 AWK='gawk'
 CC='/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5'
 CCDEPMODE='depmode=none'
 CFLAGS='-pthread -Os -w -pipe -march=native'
 CPP='/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E'
 CPPFLAGS='-isystem/gpfs/home/rcthomps/.linuxbrew/include'
 CYGPATH_W='echo'
 DEFS='-DHAVE_CONFIG_H'
 DEPDIR='.deps'
 DISTCHECK_CONFIGURE_FLAGS='CFLAGS='\'''\'' CXXFLAGS='\'''\'' --enable-pcre2-16 --enable-pcre2-32 --enable-jit --enable-utf'
 DLLTOOL='dlltool'
 DSYMUTIL=''
 DUMPBIN=''
 ECHO_C=''
 ECHO_N='-n'
 ECHO_T=''
 EGREP='/bin/grep -E'
 EXEEXT=''
 EXTRA_LIBPCRE2_16_LDFLAGS='    -version-info 2:0:2'
 EXTRA_LIBPCRE2_32_LDFLAGS='    -version-info 2:0:2'
 EXTRA_LIBPCRE2_8_LDFLAGS='    -version-info 2:0:2'
 EXTRA_LIBPCRE2_POSIX_LDFLAGS='    -version-info 0:0:0'
 FGREP='/bin/grep -F'
 GCOV_CFLAGS=''
 GCOV_CXXFLAGS=''
 GCOV_LIBS=''
 GENHTML=''
 GREP='/bin/grep'
 HAVE_VISIBILITY='1'
 INSTALL_DATA='${INSTALL} -m 644'
 INSTALL_PROGRAM='${INSTALL}'
 INSTALL_SCRIPT='${INSTALL}'
 INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
 LCOV=''
 LD='/gpfs/home/rcthomps/.linuxbrew/bin/ld -m elf_x86_64'
 LDFLAGS='-L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib'
 LIBBZ2='-lbz2'
 LIBOBJS=''
 LIBREADLINE=''
 LIBS=' '
 LIBTOOL='$(SHELL) $(top_builddir)/libtool'
 LIBZ='-lz'
 LIPO=''
 LN_S='ln -s'
 LTLIBOBJS=''
 LT_SYS_LIBRARY_PATH=''
 MAKEINFO='${SHELL} /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/missing makeinfo'
 MANIFEST_TOOL=':'
 MKDIR_P='/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p'
 NM='/gpfs/home/rcthomps/.linuxbrew/bin/nm -B'
 NMEDIT=''
 OBJDUMP='objdump'
 OBJEXT='o'
 OTOOL64=''
 OTOOL=''
 PACKAGE='pcre2'
 PACKAGE_BUGREPORT=''
 PACKAGE_NAME='PCRE2'
 PACKAGE_STRING='PCRE2 10.20'
 PACKAGE_TARNAME='pcre2'
 PACKAGE_URL=''
 PACKAGE_VERSION='10.20'
 PATH_SEPARATOR=':'
 PCRE2_DATE='2015-06-30'
 PCRE2_MAJOR='10'
 PCRE2_MINOR='20'
 PCRE2_PRERELEASE=''
 PCRE2_STATIC_CFLAG=''
 PKG_CONFIG=''
 PKG_CONFIG_LIBDIR='/gpfs/home/rcthomps/.linuxbrew/lib/pkgconfig'
 PKG_CONFIG_PATH=''
 PTHREAD_CC='/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5'
 PTHREAD_CFLAGS='-pthread'
 PTHREAD_LIBS=''
 RANLIB='ranlib'
 SED='/gpfs/home/rcthomps/.linuxbrew/bin/sed'
 SET_MAKE=''
 SHELL='/bin/sh'
 SHTOOL=''
 STRIP='strip'
 VALGRIND_CFLAGS=''
 VALGRIND_LIBS=''
 VERSION='10.20'
 VISIBILITY_CFLAGS='-fvisibility=hidden'
 VISIBILITY_CXXFLAGS='-fvisibility=hidden -fvisibility-inlines-hidden'
 WITH_DEBUG_FALSE=''
 WITH_DEBUG_TRUE='#'
 WITH_GCOV_FALSE=''
 WITH_GCOV_TRUE='#'
 WITH_JIT_FALSE='#'
 WITH_JIT_TRUE=''
 WITH_PCRE2_16_FALSE='#'
 WITH_PCRE2_16_TRUE=''
 WITH_PCRE2_32_FALSE='#'
 WITH_PCRE2_32_TRUE=''
 WITH_PCRE2_8_FALSE='#'
 WITH_PCRE2_8_TRUE=''
 WITH_REBUILD_CHARTABLES_FALSE=''
 WITH_REBUILD_CHARTABLES_TRUE='#'
 WITH_UNICODE_FALSE='#'
 WITH_UNICODE_TRUE=''
 WITH_VALGRIND_FALSE=''
 WITH_VALGRIND_TRUE='#'
 ac_ct_AR='ar'
 ac_ct_CC='/gpfs/home/rcthomps/.linuxbrew/bin/gcc-5'
 ac_ct_DUMPBIN=''
 am__EXEEXT_FALSE=''
 am__EXEEXT_TRUE='#'
 am__fastdepCC_FALSE=''
 am__fastdepCC_TRUE='#'
 am__include='include'
 am__isrc=''
 am__leading_dot='.'
 am__nodep=''
 am__quote=''
 am__tar='$${TAR-tar} chof - "$$tardir"'
 am__untar='$${TAR-tar} xf -'
 ax_pthread_config=''
 bindir='${exec_prefix}/bin'
 build='x86_64-unknown-linux-gnu'
 build_alias=''
 build_cpu='x86_64'
 build_os='linux-gnu'
 build_vendor='unknown'
 datadir='${datarootdir}'
 datarootdir='${prefix}/share'
 docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
 dvidir='${docdir}'
 enable_pcre2_16='yes'
 enable_pcre2_32='yes'
 enable_pcre2_8='yes'
 exec_prefix='${prefix}'
 host='x86_64-unknown-linux-gnu'
 host_alias=''
 host_cpu='x86_64'
 host_os='linux-gnu'
 host_vendor='unknown'
 htmldir='${docdir}/html'
 includedir='${prefix}/include'
 infodir='${datarootdir}/info'
 install_sh='${SHELL} /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/install-sh'
 libdir='${exec_prefix}/lib'
 libexecdir='${exec_prefix}/libexec'
 localedir='${datarootdir}/locale'
 localstatedir='${prefix}/var'
 mandir='${datarootdir}/man'
 mkdir_p='$(MKDIR_P)'
 oldincludedir='/usr/include'
 pdfdir='${docdir}'
 prefix='/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20'
 program_transform_name='s,x,x,'
 psdir='${docdir}'
 sbindir='${exec_prefix}/sbin'
 sharedstatedir='${prefix}/com'
 sysconfdir='${prefix}/etc'
 target_alias=''

 ## ----------- ##
 ## confdefs.h. ##
 ## ----------- ##

 /* confdefs.h */
 #define PACKAGE_NAME "PCRE2"
 #define PACKAGE_TARNAME "pcre2"
 #define PACKAGE_VERSION "10.20"
 #define PACKAGE_STRING "PCRE2 10.20"
 #define PACKAGE_BUGREPORT ""
 #define PACKAGE_URL ""
 #define PACKAGE "pcre2"
 #define VERSION "10.20"
 #define STDC_HEADERS 1
 #define HAVE_SYS_TYPES_H 1
 #define HAVE_SYS_STAT_H 1
 #define HAVE_STDLIB_H 1
 #define HAVE_STRING_H 1
 #define HAVE_MEMORY_H 1
 #define HAVE_STRINGS_H 1
 #define HAVE_INTTYPES_H 1
 #define HAVE_STDINT_H 1
 #define HAVE_UNISTD_H 1
 #define HAVE_DLFCN_H 1
 #define LT_OBJDIR ".libs/"
 #define PCRE2_EXP_DECL extern __attribute__ ((visibility ("default")))
 #define PCRE2_EXP_DEFN __attribute__ ((visibility ("default")))
 #define PCRE2POSIX_EXP_DECL extern __attribute__ ((visibility ("default")))
 #define PCRE2POSIX_EXP_DEFN extern __attribute__ ((visibility ("default")))
 #define HAVE_VISIBILITY 1
 #define STDC_HEADERS 1
 #define HAVE_LIMITS_H 1
 #define HAVE_SYS_TYPES_H 1
 #define HAVE_SYS_STAT_H 1
 #define HAVE_DIRENT_H 1
 #define HAVE_BCOPY 1
 #define HAVE_MEMMOVE 1
 #define HAVE_STRERROR 1
 #define HAVE_ZLIB_H 1
 #define HAVE_BZLIB_H 1
 #define SUPPORT_PCRE2_8 /**/
 #define SUPPORT_PCRE2_16 /**/
 #define SUPPORT_PCRE2_32 /**/
 #define HAVE_PTHREAD_PRIO_INHERIT 1
 #define HAVE_PTHREAD 1
 #define SUPPORT_JIT /**/
 #define SUPPORT_PCRE2GREP_JIT /**/
 #define SUPPORT_UNICODE /**/
 #define SUPPORT_LIBZ /**/
 #define SUPPORT_LIBBZ2 /**/
 #define PCRE2GREP_BUFSIZE 20480
 #define NEWLINE_DEFAULT 2
 #define LINK_SIZE 2
 #define PARENS_NEST_LIMIT 250
 #define MATCH_LIMIT 10000000
 #define MATCH_LIMIT_RECURSION MATCH_LIMIT
 #define MAX_NAME_SIZE 32
 #define MAX_NAME_COUNT 10000

 configure: exit 0
	Homebrew build logs for pcre2 on "CentOS release 6.7 (Final)"
	Build date: 2016-06-14 13:49:25
	HOMEBREW_VERSION: 0.9.9
	ORIGIN: https://github.com/Linuxbrew/brew.git
	HEAD: 91b4a8471614f2fe978c1031fd28dc181eac3c0e
	Last commit: 2 days ago
	Core tap ORIGIN: https://github.com/Linuxbrew/homebrew-core
	Core tap HEAD: 289181971566013d9ed5969f0a5d3383f8fedfd2
	Core tap last commit: 2 days ago
	HOMEBREW_PREFIX: /gpfs/home/rcthomps/.linuxbrew
	HOMEBREW_REPOSITORY: /gpfs/home/rcthomps/.linuxbrew
	HOMEBREW_CELLAR: /gpfs/home/rcthomps/.linuxbrew/Cellar
	HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
	CPU: 8-core 64-bit merom
	Kernel: Linux 2.6.32-573.12.1.el6.x86_64 x86_64 GNU/Linux
	OS: CentOS release 6.7 (Final)
	Codename: Final
	OS glibc: 2.12
	OS gcc: 4.4.7
	Linuxbrew glibc: 2.19
	Linuxbrew gcc: 5.3.0
	Clang: N/A
	X11: N/A
	System Ruby: 2.3.1 => /gpfs/home/rcthomps/.rbenv/versions/2.3.1/bin/ruby
	Perl: /gpfs/home/rcthomps/perl5/perlbrew/perls/perl-5.16.0/bin/perl
	Python: /gpfs/home/rcthomps/.pyenv/shims/python => /gpfs/home/rcthomps/.pyenv/versions/2.7.11/bin/python2.7
	Ruby: /gpfs/home/rcthomps/.rbenv/versions/2.3.1/bin/ruby
	Java: 1.8.0_65
	Please note that these warnings are just used to help the Homebrew maintainers
	with debugging if you file an issue. If everything you use Homebrew for is
	working fine: please don't worry and just ignore them. Thanks!

	Warning: Setting LD_* vars can break dynamic linking.
	Set variables:
	LD_LIBRARY_PATH: /opt/applications/R/3.2.3/gnu/lib64/R/lib:/opt/applications/R/3.2.3/gnu/lib64/R/library/Rhipe/libs:/opt/applications/bamtools/2.4.0/gnu/lib/bamtools:/opt/applications/samtools/1.3/gnu/lib:/opt/applications/java/jdk1.8.0_65/lib:/opt/applications/fastx/0.0.14/gnu/lib:/opt/applications/blast/2.2.31+/lib

	Warning: "config" scripts exist outside your system or Homebrew directories.
	`./configure` scripts often look for *-config scripts to determine if
	software packages are installed, and what additional flags to use when
	compiling and linking.

	Having additional scripts in your path can confuse software installed via
	Homebrew if the config script overrides a system or Homebrew provided
	script of the same name. We found the following "config" scripts:
	/gpfs/home/rcthomps/.pyenv/shims/python2.7-config
	/gpfs/home/rcthomps/.pyenv/shims/python2-config
	/gpfs/home/rcthomps/.pyenv/shims/python-config
	2016-06-14 13:48:37 -0700

	./configure
	--disable-dependency-tracking
	--prefix=/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20
	--enable-pcre2-16
	--enable-pcre2-32
	--enable-pcre2grep-libz
	--enable-pcre2grep-libbz2
	--enable-jit

	checking for a BSD-compatible install... /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c
	checking whether build environment is sane... yes
	checking for a thread-safe mkdir -p... /gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p
	checking for gawk... gawk
	checking whether make sets $(MAKE)... yes
	checking whether make supports nested variables... yes
	checking whether make supports nested variables... (cached) yes
	checking for style of include used by make... GNU
	checking for gcc... /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
	checking whether the C compiler works... yes
	checking for C compiler default output file name... a.out
	checking for suffix of executables...
	checking whether we are cross compiling... no
	checking for suffix of object files... o
	checking whether we are using the GNU C compiler... yes
	checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 accepts -g... yes
	checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to accept ISO C89... none needed
	checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 understands -c and -o together... yes
	checking dependency style of /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5... none
	checking for ar... ar
	checking the archiver (ar) interface... ar
	checking for gcc... (cached) /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
	checking whether we are using the GNU C compiler... (cached) yes
	checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 accepts -g... (cached) yes
	checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to accept ISO C89... (cached) none needed
	checking whether /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 understands -c and -o together... (cached) yes
	checking dependency style of /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5... (cached) none
	checking how to run the C preprocessor... /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E
	checking for grep that handles long lines and -e... /bin/grep
	checking for egrep... /bin/grep -E
	checking for ANSI C header files... yes
	checking for sys/types.h... yes
	checking for sys/stat.h... yes
	checking for stdlib.h... yes
	checking for string.h... yes
	checking for memory.h... yes
	checking for strings.h... yes
	checking for inttypes.h... yes
	checking for stdint.h... yes
	checking for unistd.h... yes
	checking for int64_t... yes
	checking build system type... x86_64-unknown-linux-gnu
	checking host system type... x86_64-unknown-linux-gnu
	checking how to print strings... printf
	checking for a sed that does not truncate output... /gpfs/home/rcthomps/.linuxbrew/bin/sed
	checking for fgrep... /bin/grep -F
	checking for ld used by /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5... /gpfs/home/rcthomps/.linuxbrew/bin/ld
	checking if the linker (/gpfs/home/rcthomps/.linuxbrew/bin/ld) is GNU ld... yes
	checking for BSD- or MS-compatible name lister (nm)... /gpfs/home/rcthomps/.linuxbrew/bin/nm -B
	checking the name lister (/gpfs/home/rcthomps/.linuxbrew/bin/nm -B) interface... BSD nm
	checking whether ln -s works... yes
	checking the maximum length of command line arguments... 1966080
	checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
	checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
	checking for /gpfs/home/rcthomps/.linuxbrew/bin/ld option to reload object files... -r
	checking for objdump... objdump
	checking how to recognize dependent libraries... pass_all
	checking for dlltool... dlltool
	checking how to associate runtime and link libraries... printf %s\n
	checking for archiver @FILE support... @
	checking for strip... strip
	checking for ranlib... ranlib
	checking command to parse /gpfs/home/rcthomps/.linuxbrew/bin/nm -B output from /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 object... ok
	checking for sysroot... no
	checking for a working dd... /gpfs/home/rcthomps/.linuxbrew/bin/dd
	checking how to truncate binary pipes... /gpfs/home/rcthomps/.linuxbrew/bin/dd bs=4096 count=1
	checking for mt... no
	checking if : is a manifest tool... no
	checking for dlfcn.h... yes
	checking for objdir... .libs
	checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -fno-rtti -fno-exceptions... yes
	checking for /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 option to produce PIC... -fPIC -DPIC
	checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 PIC flag -fPIC -DPIC works... yes
	checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 static flag -static works... yes
	checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -c -o file.o... yes
	checking if /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 supports -c -o file.o... (cached) yes
	checking whether the /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 linker (/gpfs/home/rcthomps/.linuxbrew/bin/ld -m elf_x86_64) supports shared libraries... yes
	checking whether -lc should be explicitly linked in... no
	checking dynamic linker characteristics... GNU/Linux ld.so
	checking how to hardcode library paths into programs... immediate
	checking whether stripping libraries is possible... yes
	checking if libtool supports shared libraries... yes
	checking whether to build shared libraries... yes
	checking whether to build static libraries... yes
	checking whether ln -s works... yes
	checking whether the -Werror option is usable... yes
	checking for simple visibility declarations... yes
	checking for ANSI C header files... (cached) yes
	checking limits.h usability... yes
	checking limits.h presence... yes
	checking for limits.h... yes
	checking for sys/types.h... (cached) yes
	checking for sys/stat.h... (cached) yes
	checking dirent.h usability... yes
	checking dirent.h presence... yes
	checking for dirent.h... yes
	checking windows.h usability... no
	checking windows.h presence... no
	checking for windows.h... no
	checking for an ANSI C-conforming const... yes
	checking for size_t... yes
	checking for bcopy... yes
	checking for memmove... yes
	checking for strerror... yes
	checking zlib.h usability... yes
	checking zlib.h presence... yes
	checking for zlib.h... yes
	checking for gzopen in -lz... yes
	checking bzlib.h usability... yes
	checking bzlib.h presence... yes
	checking for bzlib.h... yes
	checking for libbz2... yes
	checking for the pthreads library -lpthreads... no
	checking whether pthreads work without any flags... no
	checking whether pthreads work with -Kthread... no
	checking whether pthreads work with -kthread... no
	checking for the pthreads library -llthread... no
	checking whether pthreads work with -pthread... yes
	checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
	checking if more special flags are required for pthreads... no
	checking for PTHREAD_PRIO_INHERIT... yes
	checking that generated files are newer than configure... done
	configure: creating ./config.status
	config.status: creating Makefile
	config.status: creating libpcre2-8.pc
	config.status: creating libpcre2-16.pc
	config.status: creating libpcre2-32.pc
	config.status: creating libpcre2-posix.pc
	config.status: creating pcre2-config
	config.status: creating src/pcre2.h
	config.status: creating src/config.h
	config.status: executing depfiles commands
	config.status: executing libtool commands
	config.status: executing script-chmod commands
	config.status: executing delete-old-chartables commands

	pcre2-10.20 configuration summary:

	Install prefix .................. : /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20
	C preprocessor .................. : /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -E
	C compiler ...................... : /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5
	Linker .......................... : /gpfs/home/rcthomps/.linuxbrew/bin/ld -m elf_x86_64
	C preprocessor flags ............ : -isystem/gpfs/home/rcthomps/.linuxbrew/include
	C compiler flags ................ : -pthread -Os -w -pipe -march=native -fvisibility=hidden
	Linker flags .................... : -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib
	Extra libraries ................. :

	Build 8-bit pcre2 library ....... : yes
	Build 16-bit pcre2 library ...... : yes
	Build 32-bit pcre2 library ...... : yes
	Include debugging code .......... : no
	Enable JIT compiling support .... : yes
	Enable Unicode support .......... : yes
	Newline char/sequence ........... : lf
	\R matches only ANYCRLF ......... : no
	EBCDIC coding ................... : no
	EBCDIC code for NL .............. : n/a
	Rebuild char tables ............. : no
	Use stack recursion ............. : yes
	Internal link size .............. : 2
	Nested parentheses limit ........ : 250
	Match limit ..................... : 10000000
	Match limit recursion ........... : MATCH_LIMIT
	Build shared libs ............... : yes
	Build static libs ............... : yes
	Use JIT in pcre2grep ............ : yes
	Buffer size for pcre2grep ....... : 20480
	Link pcre2grep with libz ........ : yes
	Link pcre2grep with libbz2 ...... : yes
	Link pcre2test with libedit ..... : no
	Link pcre2test with libreadline . : no
	Valgrind support ................ : no
	Code coverage ................... : no
	2016-06-14 13:48:47 -0700

	make

	rm -f src/pcre2_chartables.c
	ln -s /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/src/pcre2_chartables.c.dist /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/src/pcre2_chartables.c
	make all-am
	make[1]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	CC src/libpcre2_8_la-pcre2_auto_possess.lo
	CC src/libpcre2_8_la-pcre2_config.lo
	CC src/libpcre2_8_la-pcre2_compile.lo
	CC src/libpcre2_8_la-pcre2_dfa_match.lo
	CC src/libpcre2_8_la-pcre2_context.lo
	CC src/libpcre2_8_la-pcre2_error.lo
	CC src/libpcre2_8_la-pcre2_jit_compile.lo
	CC src/libpcre2_8_la-pcre2_maketables.lo
	CC src/libpcre2_8_la-pcre2_match.lo
	CC src/libpcre2_8_la-pcre2_match_data.lo
	CC src/libpcre2_8_la-pcre2_newline.lo
	CC src/libpcre2_8_la-pcre2_ord2utf.lo
	CC src/libpcre2_8_la-pcre2_pattern_info.lo
	CC src/libpcre2_8_la-pcre2_serialize.lo
	CC src/libpcre2_8_la-pcre2_string_utils.lo
	CC src/libpcre2_8_la-pcre2_study.lo
	CC src/libpcre2_8_la-pcre2_substitute.lo
	CC src/libpcre2_8_la-pcre2_substring.lo
	CC src/libpcre2_8_la-pcre2_tables.lo
	CC src/libpcre2_8_la-pcre2_ucd.lo
	CC src/libpcre2_8_la-pcre2_valid_utf.lo
	CC src/libpcre2_8_la-pcre2_xclass.lo
	CC src/libpcre2_8_la-pcre2_chartables.lo
	CC src/libpcre2_16_la-pcre2_auto_possess.lo
	CC src/libpcre2_16_la-pcre2_compile.lo
	CC src/libpcre2_16_la-pcre2_config.lo
	CC src/libpcre2_16_la-pcre2_context.lo
	CC src/libpcre2_16_la-pcre2_dfa_match.lo
	CC src/libpcre2_16_la-pcre2_error.lo
	CC src/libpcre2_16_la-pcre2_jit_compile.lo
	CC src/libpcre2_16_la-pcre2_maketables.lo
	CC src/libpcre2_16_la-pcre2_match.lo
	CC src/libpcre2_16_la-pcre2_match_data.lo
	CC src/libpcre2_16_la-pcre2_newline.lo
	CC src/libpcre2_16_la-pcre2_ord2utf.lo
	CC src/libpcre2_16_la-pcre2_pattern_info.lo
	CC src/libpcre2_16_la-pcre2_serialize.lo
	CC src/libpcre2_16_la-pcre2_string_utils.lo
	CC src/libpcre2_16_la-pcre2_study.lo
	CC src/libpcre2_16_la-pcre2_substitute.lo
	CC src/libpcre2_16_la-pcre2_substring.lo
	CC src/libpcre2_16_la-pcre2_tables.lo
	CC src/libpcre2_16_la-pcre2_ucd.lo
	CC src/libpcre2_16_la-pcre2_valid_utf.lo
	CC src/libpcre2_16_la-pcre2_xclass.lo
	CC src/libpcre2_16_la-pcre2_chartables.lo
	CC src/libpcre2_32_la-pcre2_auto_possess.lo
	CC src/libpcre2_32_la-pcre2_compile.lo
	CC src/libpcre2_32_la-pcre2_config.lo
	CC src/libpcre2_32_la-pcre2_context.lo
	CC src/libpcre2_32_la-pcre2_dfa_match.lo
	CC src/libpcre2_32_la-pcre2_error.lo
	CC src/libpcre2_32_la-pcre2_jit_compile.lo
	CC src/libpcre2_32_la-pcre2_maketables.lo
	CC src/libpcre2_32_la-pcre2_match.lo
	CC src/libpcre2_32_la-pcre2_match_data.lo
	CC src/libpcre2_32_la-pcre2_newline.lo
	CC src/libpcre2_32_la-pcre2_ord2utf.lo
	CC src/libpcre2_32_la-pcre2_pattern_info.lo
	CC src/libpcre2_32_la-pcre2_serialize.lo
	CC src/libpcre2_32_la-pcre2_string_utils.lo
	CC src/libpcre2_32_la-pcre2_study.lo
	CC src/libpcre2_32_la-pcre2_substitute.lo
	CC src/libpcre2_32_la-pcre2_substring.lo
	CC src/libpcre2_32_la-pcre2_tables.lo
	CC src/libpcre2_32_la-pcre2_ucd.lo
	CC src/libpcre2_32_la-pcre2_valid_utf.lo
	CC src/libpcre2_32_la-pcre2_xclass.lo
	CC src/libpcre2_32_la-pcre2_chartables.lo
	CC src/libpcre2_posix_la-pcre2posix.lo
	CC src/pcre2grep-pcre2grep.o
	CC src/pcre2test-pcre2test.o
	CC src/pcre2_jit_test-pcre2_jit_test.o
	CCLD libpcre2-8.la
	CCLD libpcre2-16.la
	CCLD libpcre2-posix.la
	CCLD pcre2grep
	CCLD libpcre2-32.la
	CCLD pcre2test
	CCLD pcre2_jit_test
	make[1]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	2016-06-14 13:49:11 -0700

	make
	check

	make check-am
	make[1]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make
	make[2]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make all-am
	make[3]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make[3]: Nothing to be done for `all-am'.
	make[3]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make[2]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make check-TESTS
	make[2]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make[3]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	PASS: RunGrepTest
	PASS: RunTest
	PASS: pcre2_jit_test
	============================================================================
	Testsuite summary for PCRE2 10.20
	============================================================================
	# TOTAL: 3
	# PASS: 3
	# SKIP: 0
	# XFAIL: 0
	# FAIL: 0
	# XPASS: 0
	# ERROR: 0
	============================================================================
	make[3]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make[2]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make[1]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	2016-06-14 13:49:23 -0700

	make
	install

	make install-am
	make[1]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make[2]: Entering directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2'
	/bin/sh ./libtool --mode=install /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c libpcre2-8.la libpcre2-16.la libpcre2-32.la libpcre2-posix.la '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2/html'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man1'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man3'
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c pcre2-config '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 AUTHORS COPYING ChangeLog LICENCE NEWS README doc/pcre2.txt doc/pcre2-config.txt doc/pcre2grep.txt doc/pcre2test.txt '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2'
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 src/pcre2posix.h '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/pkgconfig'
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/html/NON-AUTOTOOLS-BUILD.txt doc/html/README.txt doc/html/index.html doc/html/pcre2-config.html doc/html/pcre2.html doc/html/pcre2_callout_enumerate.html doc/html/pcre2_code_free.html doc/html/pcre2_compile.html doc/html/pcre2_compile_context_copy.html doc/html/pcre2_compile_context_create.html doc/html/pcre2_compile_context_free.html doc/html/pcre2_config.html doc/html/pcre2_dfa_match.html doc/html/pcre2_general_context_copy.html doc/html/pcre2_general_context_create.html doc/html/pcre2_general_context_free.html doc/html/pcre2_get_error_message.html doc/html/pcre2_get_mark.html doc/html/pcre2_get_ovector_count.html doc/html/pcre2_get_ovector_pointer.html doc/html/pcre2_get_startchar.html doc/html/pcre2_jit_compile.html doc/html/pcre2_jit_free_unused_memory.html doc/html/pcre2_jit_match.html doc/html/pcre2_jit_stack_assign.html doc/html/pcre2_jit_stack_create.html doc/html/pcre2_jit_stack_free.html doc/html/pcre2_maketables.html doc/html/pcre2_match.html doc/html/pcre2_match_context_copy.html doc/html/pcre2_match_context_create.html doc/html/pcre2_match_context_free.html doc/html/pcre2_match_data_create.html doc/html/pcre2_match_data_create_from_pattern.html doc/html/pcre2_match_data_free.html doc/html/pcre2_pattern_info.html doc/html/pcre2_serialize_decode.html doc/html/pcre2_serialize_encode.html doc/html/pcre2_serialize_free.html doc/html/pcre2_serialize_get_number_of_codes.html '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2/html'
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-8.so.0.2.0 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.so.0.2.0
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 src/pcre2.h '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/include'
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-8.so.0.2.0 libpcre2-8.so.0 \|\| { rm -f libpcre2-8.so.0 && ln -s libpcre2-8.so.0.2.0 libpcre2-8.so.0; }; })
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/pcre2-config.1 doc/pcre2grep.1 doc/pcre2test.1 '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man1'
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/pcre2.3 doc/pcre2_callout_enumerate.3 doc/pcre2_code_free.3 doc/pcre2_compile.3 doc/pcre2_compile_context_copy.3 doc/pcre2_compile_context_create.3 doc/pcre2_compile_context_free.3 doc/pcre2_config.3 doc/pcre2_dfa_match.3 doc/pcre2_general_context_copy.3 doc/pcre2_general_context_create.3 doc/pcre2_general_context_free.3 doc/pcre2_get_error_message.3 doc/pcre2_get_mark.3 doc/pcre2_get_ovector_count.3 doc/pcre2_get_ovector_pointer.3 doc/pcre2_get_startchar.3 doc/pcre2_jit_compile.3 doc/pcre2_jit_free_unused_memory.3 doc/pcre2_jit_match.3 doc/pcre2_jit_stack_assign.3 doc/pcre2_jit_stack_create.3 doc/pcre2_jit_stack_free.3 doc/pcre2_maketables.3 doc/pcre2_match.3 doc/pcre2_match_context_copy.3 doc/pcre2_match_context_create.3 doc/pcre2_match_context_free.3 doc/pcre2_match_data_create.3 doc/pcre2_match_data_create_from_pattern.3 doc/pcre2_match_data_free.3 doc/pcre2_pattern_info.3 doc/pcre2_serialize_decode.3 doc/pcre2_serialize_encode.3 doc/pcre2_serialize_free.3 doc/pcre2_serialize_get_number_of_codes.3 doc/pcre2_set_bsr.3 doc/pcre2_set_callout.3 doc/pcre2_set_character_tables.3 doc/pcre2_set_compile_recursion_guard.3 '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man3'
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 libpcre2-8.pc libpcre2-posix.pc libpcre2-16.pc libpcre2-32.pc '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/pkgconfig'
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-8.so.0.2.0 libpcre2-8.so \|\| { rm -f libpcre2-8.so && ln -s libpcre2-8.so.0.2.0 libpcre2-8.so; }; })
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-8.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.la
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-16.so.0.2.0 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.so.0.2.0
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-16.so.0.2.0 libpcre2-16.so.0 \|\| { rm -f libpcre2-16.so.0 && ln -s libpcre2-16.so.0.2.0 libpcre2-16.so.0; }; })
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-16.so.0.2.0 libpcre2-16.so \|\| { rm -f libpcre2-16.so && ln -s libpcre2-16.so.0.2.0 libpcre2-16.so; }; })
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-16.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.la
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-32.so.0.2.0 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.so.0.2.0
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-32.so.0.2.0 libpcre2-32.so.0 \|\| { rm -f libpcre2-32.so.0 && ln -s libpcre2-32.so.0.2.0 libpcre2-32.so.0; }; })
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-32.so.0.2.0 libpcre2-32.so \|\| { rm -f libpcre2-32.so && ln -s libpcre2-32.so.0.2.0 libpcre2-32.so; }; })
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-32.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.la
	libtool: warning: relinking 'libpcre2-posix.la'
	libtool: install: (cd /tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20; /bin/sh "/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20/libtool" --silent --tag CC --mode=relink /gpfs/home/rcthomps/.linuxbrew/bin/gcc-5 -DPCRE2_CODE_UNIT_WIDTH=8 -fvisibility=hidden -pthread -Os -w -pipe -march=native -version-info 0:0:0 -L/gpfs/home/rcthomps/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs/home/rcthomps/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs/home/rcthomps/.linuxbrew/lib -o libpcre2-posix.la -rpath /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib src/libpcre2_posix_la-pcre2posix.lo libpcre2-8.la )
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/html/pcre2_set_bsr.html doc/html/pcre2_set_callout.html doc/html/pcre2_set_character_tables.html doc/html/pcre2_set_compile_recursion_guard.html doc/html/pcre2_set_match_limit.html doc/html/pcre2_set_newline.html doc/html/pcre2_set_parens_nest_limit.html doc/html/pcre2_set_recursion_limit.html doc/html/pcre2_set_recursion_memory_management.html doc/html/pcre2_substitute.html doc/html/pcre2_substring_copy_byname.html doc/html/pcre2_substring_copy_bynumber.html doc/html/pcre2_substring_free.html doc/html/pcre2_substring_get_byname.html doc/html/pcre2_substring_get_bynumber.html doc/html/pcre2_substring_length_byname.html doc/html/pcre2_substring_length_bynumber.html doc/html/pcre2_substring_list_free.html doc/html/pcre2_substring_list_get.html doc/html/pcre2_substring_nametable_scan.html doc/html/pcre2_substring_number_from_name.html doc/html/pcre2api.html doc/html/pcre2build.html doc/html/pcre2callout.html doc/html/pcre2compat.html doc/html/pcre2demo.html doc/html/pcre2grep.html doc/html/pcre2jit.html doc/html/pcre2limits.html doc/html/pcre2matching.html doc/html/pcre2partial.html doc/html/pcre2pattern.html doc/html/pcre2perform.html doc/html/pcre2posix.html doc/html/pcre2sample.html doc/html/pcre2serialize.html doc/html/pcre2stack.html doc/html/pcre2syntax.html doc/html/pcre2test.html doc/html/pcre2unicode.html '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/doc/pcre2/html'
	/gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c -m 644 doc/pcre2_set_match_limit.3 doc/pcre2_set_newline.3 doc/pcre2_set_parens_nest_limit.3 doc/pcre2_set_recursion_limit.3 doc/pcre2_set_recursion_memory_management.3 doc/pcre2_substitute.3 doc/pcre2_substring_copy_byname.3 doc/pcre2_substring_copy_bynumber.3 doc/pcre2_substring_free.3 doc/pcre2_substring_get_byname.3 doc/pcre2_substring_get_bynumber.3 doc/pcre2_substring_length_byname.3 doc/pcre2_substring_length_bynumber.3 doc/pcre2_substring_list_free.3 doc/pcre2_substring_list_get.3 doc/pcre2_substring_nametable_scan.3 doc/pcre2_substring_number_from_name.3 doc/pcre2api.3 doc/pcre2build.3 doc/pcre2callout.3 doc/pcre2compat.3 doc/pcre2demo.3 doc/pcre2jit.3 doc/pcre2limits.3 doc/pcre2matching.3 doc/pcre2partial.3 doc/pcre2pattern.3 doc/pcre2perform.3 doc/pcre2posix.3 doc/pcre2sample.3 doc/pcre2serialize.3 doc/pcre2stack.3 doc/pcre2syntax.3 doc/pcre2unicode.3 '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/share/man/man3'
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-posix.so.0.0.0T /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.so.0.0.0
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-posix.so.0.0.0 libpcre2-posix.so.0 \|\| { rm -f libpcre2-posix.so.0 && ln -s libpcre2-posix.so.0.0.0 libpcre2-posix.so.0; }; })
	libtool: install: (cd /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib && { ln -s -f libpcre2-posix.so.0.0.0 libpcre2-posix.so \|\| { rm -f libpcre2-posix.so && ln -s libpcre2-posix.so.0.0.0 libpcre2-posix.so; }; })
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-posix.lai /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.la
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-8.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.a
	libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.a
	libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-8.a
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-16.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.a
	libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.a
	libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-16.a
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-32.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.a
	libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.a
	libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-32.a
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/libpcre2-posix.a /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.a
	libtool: install: chmod 644 /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.a
	libtool: install: ranlib /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib/libpcre2-posix.a
	libtool: finish: PATH="/gpfs/home/rcthomps/.rbenv/versions/2.3.1/bin:/gpfs/home/rcthomps/.rbenv/libexec:/gpfs/home/rcthomps/.rbenv/plugins/ruby-build/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/.linuxbrew/sbin:/opt/applications/gmap/160501/gnu/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/perl5/perlbrew/bin:/gpfs/home/rcthomps/perl5/perlbrew/perls/perl-5.16.0/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/.rbenv/shims:/gpfs/home/rcthomps/.rbenv/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/.linuxbrew/bin:/gpfs/home/rcthomps/.pyenv/plugins/pyenv-virtualenv/shims:/gpfs/home/rcthomps/.pyenv/shims:/gpfs/home/rcthomps/.pyenv/bin:/gpfs/home/rcthomps/bin:/gpfs/home/rcthomps/usr/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/opt/applications/R/3.2.3/gnu/bin:/opt/applications/tophat/2.1.0/gnu/bin:/opt/applications/bowtie/1.1.2:/opt/applications/star/2.5.1b/gnu/bin:/opt/applications/vcftools/0.1.14/gnu/bin:/opt/applications/tabix/0.2.6/gnu:/opt/applications/bamtools/2.4.0/gnu/bin:/opt/applications/samtools/1.3/gnu/bin:/opt/applications/picard/2.1.0/bin:/opt/applications/java/jdk1.8.0_65/bin:/opt/applications/ant/apache-ant-1.9.0/bin:/opt/applications/fastx/0.0.14/gnu/bin:/opt/applications/cufflinks/2.2.1/bin:/opt/applications/clustalw/2.1/gnu/bin:/opt/applications/bwa/0.7.12/gnu/bin:/opt/applications/blast/2.2.31+/bin:/opt/applications/bioperl/1.6.924/gnu/bin:/opt/applications/bedtools/2.17.0/gnu/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/bin:/usr/lpp/mmfs/bin:/var/lib/gems/1.8/bin:/gpfs/home/rcthomps/opt/biopieces/bp_bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/ucsc/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/var/lib/gems/1.8/bin:/gpfs/home/rcthomps/opt/biopieces/bp_bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/opt/moreutils/bin:/gpfs/home/rcthomps/opt/fseq/bin:/gpfs/home/rcthomps/opt/pbstools/bin:/gpfs/home/rcthomps/.linuxbrew/Library/ENV/scm:/sbin" ldconfig -n /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib
	----------------------------------------------------------------------
	Libraries have been installed in:
	/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/lib

	If you ever happen to want to link against installed libraries
	in a given directory, LIBDIR, you must either use libtool, and
	specify the full pathname of the library, or use the '-LLIBDIR'
	flag during linking and do at least one of the following:
	- add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
	during execution
	- add LIBDIR to the 'LD_RUN_PATH' environment variable
	during linking
	- use the '-Wl,-rpath -Wl,LIBDIR' linker flag
	- have your system administrator add LIBDIR to '/etc/ld.so.conf'

	See any operating system documentation about shared libraries for
	more information, such as the ld(1) and ld.so(8) manual pages.
	----------------------------------------------------------------------
	/gpfs/home/rcthomps/.linuxbrew/bin/mkdir -p '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
	/bin/sh ./libtool --mode=install /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c pcre2grep pcre2test '/gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin'
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/pcre2grep /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin/pcre2grep
	libtool: install: /gpfs/home/rcthomps/.linuxbrew/bin/ginstall -c .libs/pcre2test /gpfs/home/rcthomps/.linuxbrew/Cellar/pcre2/10.20/bin/pcre2test
	make[2]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'
	make[1]: Leaving directory `/tmp/pcre2-20160614-9939-12tqbjg/pcre2-10.20'