Ryan C. Thompson DarwinAwardWinner

Assistant Professor at the Icahn School of Medicine at Mount Sinai

DarwinAwardWinner / analyze_pkg_usage.R

Last active October 19, 2024 01:59

Script for finding loaded but unused packages in R scripts

	#!/usr/bin/env Rscript

	suppressPackageStartupMessages({
	library(globals)
	library(readr)
	library(stringr)
	library(rex)
	library(magrittr)
	library(rlang)
	library(knitr)

jmerrifield / index.sh

Created November 16, 2016 16:10

List latest snapshot for each zfs dataset

zfs list -H -o name -r zmirror | while read -r line; do zfs list -t snapshot -o name -s creation -r "$line" | tail -1; done

DarwinAwardWinner / R-bash-wrapper.R

Created September 10, 2015 18:26

	#!/bin/sh
	# -- mode:R --
	#PBS -l nodes=1:ppn=8,mem=30gb

	'\' >/dev/null 2>&1 \|\| true
	# This is bash code to set up the environment

	echo "Hello from bash!"
	echo "Args are: $@"

DarwinAwardWinner / python-bash-wrapper.py

Last active November 9, 2020 20:43

Put bash cluster setup code and python script in a single file

	#!/bin/bash
	# -- mode:python --
	#PBS -l nodes=1:ppn=8,mem=30gb
	''''/bin/true
	# This is bash code to set up the environment
	echo "Hello from bash!"
	echo "Args are: $@"
	# Bash setup code ends here
	python - "$@" <<EOF
	''' # Python starts here '''