Draga Doncila Pop DragaDoncila
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| --------------------------------------------------------------------------- | |
| ModuleNotFoundError Traceback (most recent call last) | |
| File ~/Work/napari/napari/components/viewer_model.py:1544, in ViewerModel._open_or_raise_error(self=Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoo...use_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), paths=['/home/ddon0001/PhD/data/ctc_dummy/Fluo-N2DL-HeLa/01/t000.tif'], kwargs={}, layer_type=None, stack=False) | |
| 1543 try: | |
| -> 1544 added = self._add_layers_with_plugins( | |
| self = Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoom=1.0, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True, orientation=(<DepthAxisOrientation.TOWARDS: 'towards'>, <VerticalAxisOrientation.DOWN: 'down'>, <HorizontalAxisOrientation.RIGHT: 'right'>)), cursor=Cursor(position=(1.0, 1.0), scaled=True, style=<CursorStyle.STANDARD: 'standard'>, size=1.0), dims=Dims(ndim=2, ndisplay=2, order=(0, 1), axis_labels=('0', '1'), rollable=(True, True), range=(RangeTu |
DragaDoncila
/ opengl_error
Created
March 17, 2025 02:31
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| WARNING: Error drawing visual <Volume at 0x7f412d5f5fd0> | |
| 13:07:30 : WARNING : MainThread : Error drawing visual <Volume at 0x7f412d5f5fd0> | |
| --------------------------------------------------------------------------- | |
| RuntimeError Traceback (most recent call last) | |
| File ~/miniconda3/envs/opengl/lib/python3.12/site-packages/vispy/app/backends/_qt.py:928, in CanvasBackendDesktop.paintGL(self=<vispy.app.backends._qt.CanvasBackendDesktop object>) | |
| 926 # (0, 0, self.width(), self.height())) | |
| 927 self._vispy_canvas.set_current() | |
| --> 928 self._vispy_canvas.events.draw(region=None) | |
| self._vispy_canvas = <NapariSceneCanvas (PyQt5) at 0x7f412dc18e30> | |
| self._vispy_canvas.events.draw = <vispy.util.event.EventEmitter object at 0x7f412d5e4140> |
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| [ | |
| "bbii-decon", | |
| "beetlesafari", | |
| "darth-d", | |
| "devbio-napari", | |
| "grabber-ift", | |
| "iacs-ipac-reader", | |
| "Image-Composer", | |
| "Image-Part-Selecter", | |
| "Label-Creator", |
DragaDoncila
/ example_ng_manifest.yaml
Last active
June 7, 2024 03:51
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| name: space-race | |
| display_name: Space Race | |
| visibility: public | |
| categories: ["Annotation", "Segmentation", "Acquisition"] | |
| contributions: | |
| commands: | |
| # NOTE: no longer needing `name` prepended - we do this for the developer | |
| - command: get_reader | |
| # contribution type is declared with command, as are the attributes of the contribution | |
| # can be done using a discriminating union |
DragaDoncila
/ extending_napari_viewer.ipynb
Last active
June 29, 2022 16:14
Extending the napari viewer with a widget, mousebinding and event callback
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DragaDoncila
/ environment.yml
Created
May 4, 2022 09:53
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| name: tracking-challenge-demo | |
| channels: | |
| - conda | |
| dependencies: | |
| - python=3.8 | |
| - pip | |
| - pip: | |
| - napari[all] | |
| - cookiecutter | |
| - scikit-image |
DragaDoncila
/ shield.json
Last active
September 2, 2021 04:36
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| { | |
| "color": "#0074B8", | |
| "label": "napari hub", | |
| "logoSvg": "<svg width=\"512\" height=\"512\" viewBox=\"0 0 512 512\" fill=\"none\" xmlns=\"http://www.w3.org/2000/svg\"><circle cx=\"256.036\" cy=\"256\" r=\"85.3333\" fill=\"white\" stroke=\"white\" stroke-width=\"56.8889\"/><circle cx=\"256.036\" cy=\"42.6667\" r=\"42.6667\" fill=\"white\"/><circle cx=\"256.036\" cy=\"469.333\" r=\"42.6667\" fill=\"white\"/><path d=\"M256.036 28.4445L256.036 142.222\" stroke=\"white\" stroke-width=\"56.8889\" stroke-linecap=\"round\" stroke-linejoin=\"round\"/><path d=\"M256.036 369.778L256.036 483.556\" stroke=\"white\" stroke-width=\"56.8889\" stroke-linecap=\"round\" stroke-linejoin=\"round\"/><circle cx=\"71.2838\" cy=\"149.333\" r=\"42.6667\" transform=\"rotate(-60 71.2838 149.333)\" fill=\"white\"/><circle cx=\"440.788\" cy=\"362.667\" r=\"42.6667\" transform=\"rotate(-60 440.788 362.667)\" fill=\"white\"/><path d=\"M58.967 142.222L157.501 199.111\" stroke=\"white\" stroke-width=\"56.8889\" stroke-linecap=\"rou |
DragaDoncila
/ shield.json
Created
August 5, 2021 04:14
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| { | |
| "schemaVersion": 1, | |
| "label": "hello", | |
| "message": "my-napari-plugin", | |
| "color": "orange" | |
| } |
DragaDoncila
/ knn_classify.py
Last active
November 24, 2020 04:34
Code plotting confusion matrix for classifier
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| from matplotlib.colors import ListedColormap | |
| from sklearn import neighbors | |
| from imblearn.under_sampling import RandomUnderSampler | |
| from sklearn.model_selection import cross_val_score | |
| from sklearn.metrics import confusion_matrix | |
| import itertools | |
| import pandas as pd | |
| import os | |
| import re |
DragaDoncila
/ file_processes.py
Created
September 26, 2018 09:50
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| import pandas as pd | |
| import os | |
| import re | |
| from sklearn.decomposition import PCA | |
| from microscopium import io | |
| from microscopium.preprocess import montage_stream | |
| from microscopium.preprocess import correct_multiimage_illumination | |
| from microscopium.preprocess import find_background_illumination |
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