DragaDoncila

---------------------------------------------------------------------------
MultipleReaderError                       Traceback (most recent call last)
File ~/.local/napari-0.7.0/envs/napari-0.7.0/lib/python3.11/site-packages/napari/_qt/qt_viewer.py:1109, in QtViewer._qt_open(self=<napari._qt.qt_viewer.QtViewer(0x559e6ace2130)>, filenames=['/home/ddon0001/Work/data/LuCa-7color_[13860,52919]_1x1component_data.tif'], stack=False, choose_plugin=False, plugin=None, layer_type=None, **kwargs={})
   1108 try:
-> 1109     self.viewer.open(
        self = <napari._qt.qt_viewer.QtViewer(0x559e6ace2130) at 0x7f3e588e89c0>
        self.viewer = Viewer(mouse_move_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x7f3e5d71b740>], mouse_drag_callbacks=[<function drag_to_zoom at 0x7f3e5d71b880>], mouse_double_click_callbacks=[<function double_click_to_zoom at 0x7f3e5d71b7e0>], camera=Camera(center=(0.0, 0.0, 0.0), zoom=1.0, angles=(0.0, 0.0, 0.0), perspective=0.0, mouse_pan=True, mouse_zoom=True, orientation=(<

DragaDoncila

version: 6
environments:
  default:
    channels:
    - url: https://conda.anaconda.org/pytorch/
    - url: https://conda.anaconda.org/gurobi/
    - url: https://conda.anaconda.org/conda-forge/
    indexes:
    - https://pypi.org/simple
    options:

DragaDoncila

from ultrack import MainConfig, Tracker
import numpy as np

labels = np.zeros((2, 50, 50), dtype=np.uint16)
labels[:, 10:15, 10:15] = 1
labels[:, 30:35, 30:35] = 2

# Create a config
config = MainConfig()

DragaDoncila

import numpy as np
import napari

# shapes = np.asarray([[122, 314 ],
#        [255, 123],
#        [443, 395],
#        [261, 230]], dtype=np.float32)
shapes = np.asarray([[122.022385, 314.54358 ],
       [255.77983 , 123.14169 ],
       [443.26413 , 395.69348 ],

DragaDoncila

     active environment : napari-ps2
    active env location : /home/ddon0001/miniconda3/envs/napari-ps2
            shell level : 3
       user config file : /home/ddon0001/.condarc
 populated config files : /home/ddon0001/.condarc
          conda version : 25.1.1
    conda-build version : not installed
         python version : 3.11.5.final.0
                 solver : libmamba (default)

DragaDoncila

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
File ~/Work/napari/napari/components/viewer_model.py:1544, in ViewerModel._open_or_raise_error(self=Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoo...use_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), paths=['/home/ddon0001/PhD/data/ctc_dummy/Fluo-N2DL-HeLa/01/t000.tif'], kwargs={}, layer_type=None, stack=False)
   1543 try:
-> 1544     added = self._add_layers_with_plugins(
        self = Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoom=1.0, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True, orientation=(<DepthAxisOrientation.TOWARDS: 'towards'>, <VerticalAxisOrientation.DOWN: 'down'>, <HorizontalAxisOrientation.RIGHT: 'right'>)), cursor=Cursor(position=(1.0, 1.0), scaled=True, style=<CursorStyle.STANDARD: 'standard'>, size=1.0), dims=Dims(ndim=2, ndisplay=2, order=(0, 1), axis_labels=('0', '1'), rollable=(True, True), range=(RangeTu

DragaDoncila

WARNING: Error drawing visual <Volume at 0x7f412d5f5fd0>
13:07:30 : WARNING : MainThread : Error drawing visual <Volume at 0x7f412d5f5fd0>
---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
File ~/miniconda3/envs/opengl/lib/python3.12/site-packages/vispy/app/backends/_qt.py:928, in CanvasBackendDesktop.paintGL(self=<vispy.app.backends._qt.CanvasBackendDesktop object>)
    926 # (0, 0, self.width(), self.height()))
    927 self._vispy_canvas.set_current()
--> 928 self._vispy_canvas.events.draw(region=None)
        self._vispy_canvas = <NapariSceneCanvas (PyQt5) at 0x7f412dc18e30>
        self._vispy_canvas.events.draw = <vispy.util.event.EventEmitter object at 0x7f412d5e4140>

DragaDoncila

[
  "bbii-decon",
  "beetlesafari",
  "darth-d",
  "devbio-napari",
  "grabber-ift",
  "iacs-ipac-reader",
  "Image-Composer",
  "Image-Part-Selecter",
  "Label-Creator",

DragaDoncila

name: space-race
display_name: Space Race
visibility: public
categories: ["Annotation", "Segmentation", "Acquisition"]
contributions:
  commands:
    # NOTE: no longer needing `name` prepended - we do this for the developer
    - command: get_reader
      # contribution type is declared with command, as are the attributes of the contribution
      # can be done using a discriminating union

DragaDoncila