compy output core diversity analyses.

core_diversity_analyses

yova1074:~$ cat TEST_CORE0.*
E...E
======================================================================
ERROR: test_run_core_diversity_analyses (__main__.CoreDiversityAnalysesTests)
run_core_diversity_analyses functions with categories
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_core_diversity_analyses.py", line 128, in test_run_core_diversity_analyses
    status_update_callback=no_status_updates)
  File "/Users/yova1074/qiime_software/qiime/qiime/core_diversity_analyses.py", line 296, in run_core_diversity_analyses
    command_handler(commands, status_update_callback, logger)
  File "/Users/yova1074/qiime_software/qiime/qiime/workflow.py", line 127, in call_commands_serially
    stdout, stderr, return_value = qiime_system_call(e[1])
  File "/Users/yova1074/qiime_software/qiime/qiime/util.py", line 1114, in qiime_system_call
    stdout, stderr = proc.communicate()
  File "/Users/yova1074/qiime_software/python-2.7.3-release/lib/python2.7/subprocess.py", line 754, in communicate
    return self._communicate(input)
  File "/Users/yova1074/qiime_software/python-2.7.3-release/lib/python2.7/subprocess.py", line 1312, in _communicate
    stdout, stderr = self._communicate_with_poll(input)
  File "/Users/yova1074/qiime_software/python-2.7.3-release/lib/python2.7/subprocess.py", line 1366, in _communicate_with_poll
    ready = poller.poll()
  File "/Users/yova1074/qiime_software/qiime/qiime/test.py", line 42, in timeout
    "Test failed to run in allowed time (%d seconds)." % seconds
TimeExceededError: Test failed to run in allowed time (120 seconds).

======================================================================
ERROR: test_run_core_diversity_analyses_parallel (__main__.CoreDiversityAnalysesTests)
run_core_diversity_analyses functions with categories in parallel
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_core_diversity_analyses.py", line 157, in test_run_core_diversity_analyses_parallel
    status_update_callback=no_status_updates)
  File "/Users/yova1074/qiime_software/qiime/qiime/core_diversity_analyses.py", line 138, in run_core_diversity_analyses
    status_update_callback=status_update_callback)
  File "/Users/yova1074/qiime_software/qiime/qiime/workflow.py", line 867, in run_beta_diversity_through_plots
    close_logger_on_success=close_logger_on_success)
  File "/Users/yova1074/qiime_software/qiime/qiime/workflow.py", line 127, in call_commands_serially
    stdout, stderr, return_value = qiime_system_call(e[1])
  File "/Users/yova1074/qiime_software/qiime/qiime/util.py", line 1114, in qiime_system_call
    stdout, stderr = proc.communicate()
  File "/Users/yova1074/qiime_software/python-2.7.3-release/lib/python2.7/subprocess.py", line 754, in communicate
    return self._communicate(input)
  File "/Users/yova1074/qiime_software/python-2.7.3-release/lib/python2.7/subprocess.py", line 1312, in _communicate
    stdout, stderr = self._communicate_with_poll(input)
  File "/Users/yova1074/qiime_software/python-2.7.3-release/lib/python2.7/subprocess.py", line 1366, in _communicate_with_poll
    ready = poller.poll()
  File "/Users/yova1074/qiime_software/qiime/qiime/test.py", line 42, in timeout
    "Test failed to run in allowed time (%d seconds)." % seconds
TimeExceededError: Test failed to run in allowed time (120 seconds).

----------------------------------------------------------------------
Ran 5 tests in 425.192s

FAILED (errors=2)
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