Feyn-Man
/ load_inbreast_roi.py
Last active
July 19, 2022 12:49
— forked from jendelel/load_inbreast_roi.py
Load INBREAST ROIs
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| from skimage.draw import polygon | |
| import numpy as np | |
| import plistlib | |
| def load_inbreast_mask(mask_path, imshape=(4084, 3328)): | |
| """ | |
| This function loads a osirix xml region as a binary numpy array for INBREAST | |
| dataset | |
| @mask_path : Path to the xml file |
Feyn-Man
/ lctsc-contour-extraction_minimum-example.ipynb
Last active
October 12, 2022 03:05
Contour extraction for LCTSC challenge. See http://aapmchallenges.cloudapp.net/competitions/3 and http://aapmchallenges.cloudapp.net/forums/3/2/
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Feyn-Man
/ sliding-window.ipynb
Last active
December 12, 2019 15:27
Python code for a sliding window on numpy arrays (images)
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Feyn-Man
/ contour_extraction_numpy_mask_array.ipynb
Created
October 29, 2020 20:24
Contour_extraction_numpy_mask_array.ipynb
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Feyn-Man
/ _dice.py
Last active
December 14, 2020 14:55
— forked from brunodoamaral/_dice.py
Dice coefficient between two boolean NumPy arrays or array-like data. This is commonly used as a set similarity measurement (though note it is not a true metric; it does not satisfy the triangle inequality). The dimensionality of the input is completely arbitrary, but `im1.shape` and `im2.shape` much be equal. This Gist is licensed under the mod…
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| def dice(im1, im2): | |
| """ | |
| Computes the Dice coefficient, a measure of set similarity. | |
| Parameters | |
| ---------- | |
| im1 : array-like, bool | |
| Any array of arbitrary size. If not boolean, will be converted. | |
| im2 : array-like, bool | |
| Any other array of identical size. If not boolean, will be converted. | |
| Returns |
Feyn-Man
/ convex-hull.ipynb
Last active
January 6, 2021 13:15
Convex hull application to single-channel binary numpy array using the OpenCV library.
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