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Created August 7, 2025 09:40
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(partial) EasyBuild log for failed build of /dev/shm/easybuild-tmp/eb-oyomoaft/files_pr22616/s/sympy/sympy-1.12-gfbf-2024a.eb (PR(s) #22616)
== 2025-08-07 11:31:07,477 easyblock.py:369 INFO This is EasyBuild 5.1.2.dev0-rf8c94c316de871eab4959dbfaef69652b9173b7e (framework: 5.1.2.dev0-rf8c94c316de871eab4959dbfaef69652b9173b7e, easyblocks: 5.1.2.dev0-r6a532731e7840dba4b71f4612f69fd2b75417e6a) on host n1217.
== 2025-08-07 11:31:07,477 easyblock.py:375 INFO This is easyblock EB_sympy from module easybuild.easyblocks.sympy (/home/s3248973/.local/EasyBuildDev/easybuild-easyblocks/easybuild/easyblocks/s/sympy.py)
== 2025-08-07 11:31:07,477 easyblock.py:1150 INFO Build dir set to /dev/shm/s3248973-EasyBuild18630567/sympy/1.12/gfbf-2024a
== 2025-08-07 11:31:07,477 easyblock.py:1210 INFO Software install dir set to /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/sympy/1.12-gfbf-2024a
== 2025-08-07 11:31:07,477 easyblock.py:1215 INFO Module install dir set to /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/modules/all
== 2025-08-07 11:31:07,477 easyblock.py:343 INFO Init completed for application name sympy version 1.12
== 2025-08-07 11:31:07,478 pythonpackage.py:472 INFO Using default value for expected module name (lowercase software name): 'sympy'
== 2025-08-07 11:31:07,478 pythonpackage.py:518 INFO Using pip with --no-deps option
== 2025-08-07 11:31:07,478 pythonpackage.py:546 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command
== 2025-08-07 11:31:07,478 environment.py:95 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined)
== 2025-08-07 11:31:07,478 environment.py:95 INFO Environment variable PIP_REQUIRE_VIRTUALENV set to false (previously undefined)
== 2025-08-07 11:31:07,478 environment.py:95 INFO Environment variable PIP_DISABLE_PIP_VERSION_CHECK set to true (previously undefined)
== 2025-08-07 11:31:07,478 environment.py:95 INFO Environment variable XDG_CACHE_HOME set to /dev/shm/easybuild-tmp/eb-oyomoaft/xdg-cache-home (previously undefined)
== 2025-08-07 11:31:07,478 python.py:273 INFO Using /dev/shm/easybuild-tmp/eb-oyomoaft/xdg-cache-home as pip cache directory
== 2025-08-07 11:31:07,479 easyblock.py:4991 INFO Obtained application instance for sympy (easyblock: None)
== 2025-08-07 11:31:07,479 easyconfig.py:1812 INFO Generating template values...
== 2025-08-07 11:31:07,479 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='sympy', github_account='sympy', module_name='sympy/1.12-gfbf-2024a', name='sympy', nameletter='s', nameletterlower='s', namelower='sympy', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='false', software_commit='', sysroot='', toolchain_name='gfbf', toolchain_version='2024a', version='1.12', version_major='1', version_major_minor='1.12', version_minor='12', versionprefix='', versionsuffix=''
== 2025-08-07 11:31:07,479 one.py:179 INFO Skipping reformatting value for parameter 'toolchain'
== 2025-08-07 11:31:07,479 filetools.py:2044 INFO Creating directory /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466 (parents: True, set_gid: False, sticky: False)
== 2025-08-07 11:31:07,480 easyblock.py:5263 INFO Dumped easyconfig instance to /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/sympy-1.12-gfbf-2024a.eb
== 2025-08-07 11:31:07,481 filetools.py:2044 INFO Creating directory /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/easyblocks (parents: True, set_gid: False, sticky: False)
== 2025-08-07 11:31:07,488 filetools.py:2528 INFO /home/s3248973/.local/EasyBuildDev/easybuild-easyblocks/easybuild/easyblocks/s/sympy.py copied to /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/easyblocks/sympy.py
== 2025-08-07 11:31:07,488 easyblock.py:5243 INFO Dumped easyblock sympy.py required for reproduction to /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/easyblocks
== 2025-08-07 11:31:07,513 filetools.py:2528 INFO /home/s3248973/.local/EasyBuildDev/easybuild-easyblocks/easybuild/easyblocks/generic/pythonpackage.py copied to /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/easyblocks/pythonpackage.py
== 2025-08-07 11:31:07,513 easyblock.py:5243 INFO Dumped easyblock pythonpackage.py required for reproduction to /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/easyblocks
== 2025-08-07 11:31:07,515 filetools.py:2044 INFO Creating directory /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/hooks (parents: True, set_gid: False, sticky: False)
== 2025-08-07 11:31:07,525 filetools.py:2528 INFO /home/s3248973/.local/EasyBuildDev/hooks.py copied to /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/hooks/hooks.py
== 2025-08-07 11:31:07,525 easyblock.py:5275 INFO Dumped hooks file /home/s3248973/.local/EasyBuildDev/hooks.py which is (potentially) required for reproduction to /dev/shm/easybuild-tmplog/reprod_20250807113107_2894466/hooks/hooks.py
== 2025-08-07 11:31:07,529 filetools.py:1896 INFO Adjusting permissions recursively for /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/sympy/1.12-gfbf-2024a
== 2025-08-07 11:31:45,769 easyblock.py:2444 INFO Number of iterations to perform for central part of installation procedure: 1
== 2025-08-07 11:31:45,769 build_log.py:322 INFO building and installing sympy/1.12-gfbf-2024a...
== 2025-08-07 11:31:45,770 filetools.py:2127 INFO Lock /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rapids_software_sympy_1.12-gfbf-2024a.lock does not exist
== 2025-08-07 11:31:45,770 filetools.py:2084 INFO Creating lock at /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rapids_software_sympy_1.12-gfbf-2024a.lock...
== 2025-08-07 11:31:45,770 filetools.py:2044 INFO Creating directory /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rapids_software_sympy_1.12-gfbf-2024a.lock (parents: True, set_gid: False, sticky: False)
== 2025-08-07 11:31:45,775 filetools.py:2093 INFO Lock created: /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rapids_software_sympy_1.12-gfbf-2024a.lock
== 2025-08-07 11:31:45,809 run.py:491 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
== 2025-08-07 11:31:45,810 run.py:502 INFO Running shell command 'ulimit -u' in /home/h3/s3248973
== 2025-08-07 11:31:45,812 run.py:616 INFO Shell command completed successfully: ulimit -u
== 2025-08-07 11:31:45,812 run.py:618 INFO Output of 'ulimit ...' shell command (stdout + stderr):
2061954
== 2025-08-07 11:31:45,812 systemtools.py:1368 INFO Limiting parallelism from 208 to 16
== 2025-08-07 11:31:45,812 easyblock.py:2480 INFO Setting parallelism: 16
== 2025-08-07 11:31:45,812 build_log.py:322 INFO fetching files and verifying checksums...
== 2025-08-07 11:31:45,812 easyblock.py:4662 INFO Starting fetch step
== 2025-08-07 11:31:45,812 easyconfig.py:1812 INFO Generating template values...
== 2025-08-07 11:31:45,812 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='sympy', builddir='/dev/shm/s3248973-EasyBuild18630567/sympy/1.12/gfbf-2024a', github_account='sympy', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/sympy/1.12-gfbf-2024a', module_name='sympy/1.12-gfbf-2024a', name='sympy', nameletter='s', nameletterlower='s', namelower='sympy', parallel='16', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='false', software_commit='', start_dir='None', sysroot='', toolchain_name='gfbf', toolchain_version='2024a', version='1.12', version_major='1', version_major_minor='1.12', version_minor='12', versionprefix='', versionsuffix=''
== 2025-08-07 11:31:45,813 easyblock.py:4673 INFO Running method fetch_step part of step fetch
== 2025-08-07 11:31:45,813 easyblock.py:2581 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2025-08-07 11:31:45,813 easyblock.py:893 INFO Considering directory in which easyconfig file is located when searching for sympy-1.12.tar.gz: /dev/shm/easybuild-tmp/eb-oyomoaft/files_pr22616/s/sympy
== 2025-08-07 11:31:45,813 tools.py:275 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/s3248973/.local/EasyBuildDev/easybuild-framework/eb
== 2025-08-07 11:31:45,813 tools.py:291 INFO Not considering /home/s3248973/.local/EasyBuildDev (no easybuild/easyconfigs subdir found)
== 2025-08-07 11:31:45,814 tools.py:299 INFO Also considering installation prefix /home/h3/s3248973/.local/EasyBuildDev (via resolved path to 'eb')...
== 2025-08-07 11:31:45,823 easyblock.py:935 INFO Found file sympy-1.12.tar.gz at /data/horse/ws/s3248973-EasyBuild/sources/s/sympy/sympy-1.12.tar.gz
== 2025-08-07 11:31:45,824 easyblock.py:577 INFO Added sources: [{'name': 'sympy-1.12.tar.gz', 'path': '/data/horse/ws/s3248973-EasyBuild/sources/s/sympy/sympy-1.12.tar.gz', 'cmd': None, 'checksum': 'ebf595c8dac3e0fdc4152c51878b498396ec7f30e7a914d6071e674d49420fb8', 'finalpath': '/dev/shm/s3248973-EasyBuild18630567/sympy/1.12/gfbf-2024a'}]
== 2025-08-07 11:31:45,824 easyblock.py:2626 INFO no patches provided
== 2025-08-07 11:31:45,847 easyblock.py:2635 INFO sha256 checksum for /data/horse/ws/s3248973-EasyBuild/sources/s/sympy/sympy-1.12.tar.gz: ebf595c8dac3e0fdc4152c51878b498396ec7f30e7a914d6071e674d49420fb8
== 2025-08-07 11:31:45,847 easyblock.py:2670 INFO Checking dirs that need to be created: ['/data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/sympy/1.12-gfbf-2024a', '/data/horse/ws/s3248973-EasyBuild/easybuild-rapids/modules/all/sympy', '/data/horse/ws/s3248973-EasyBuild/easybuild-rapids/modules/math/sympy']
== 2025-08-07 11:31:45,863 easyblock.py:4673 INFO Running method checksum_step part of step fetch
== 2025-08-07 11:31:45,870 easyblock.py:2688 INFO Checksum verification for /data/horse/ws/s3248973-EasyBuild/sources/s/sympy/sympy-1.12.tar.gz using ebf595c8dac3e0fdc4152c51878b498396ec7f30e7a914d6071e674d49420fb8 passed.
== 2025-08-07 11:31:45,870 build_log.py:322 INFO creating build dir, resetting environment...
== 2025-08-07 11:31:45,870 easyblock.py:4662 INFO Starting ready step
== 2025-08-07 11:31:45,870 easyconfig.py:1812 INFO Generating template values...
== 2025-08-07 11:31:45,871 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='sympy', builddir='/dev/shm/s3248973-EasyBuild18630567/sympy/1.12/gfbf-2024a', github_account='sympy', installdir='/data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/sympy/1.12-gfbf-2024a', module_name='sympy/1.12-gfbf-2024a', name='sympy', nameletter='s', nameletterlower='s', namelower='sympy', parallel='16', pymajver='3', pyminver='12', pyshortver='3.12', pyver='3.12.3', rpath_enabled='false', software_commit='', start_dir='None', sysroot='', toolchain_name='gfbf', toolchain_version='2024a', version='1.12', version_major='1', version_major_minor='1.12', version_minor='12', versionprefix='', versionsuffix=''
== 2025-08-07 11:31:45,871 easyblock.py:4673 INFO Running method check_readiness_step part of step ready
== 2025-08-07 11:31:45,871 run.py:502 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python --terse list' in /home/h3/s3248973
== 2025-08-07 11:31:45,905 run.py:616 INFO Shell command completed successfully: /usr/share/lmod/lmod/libexec/lmod python --terse list
== 2025-08-07 11:31:45,905 run.py:618 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only):
import os
os.environ["MODULEPATH"] = "/data/horse/ws/s3248973-EasyBuild/easybuild-rapids/modules/all:/home/s3248973/.local/EasyBuildDev/modules:/software/modules/rapids/r23.10/all/Core:/software/modules/releases/rapids:/home/s3248973/.local/easybuild/modules/all";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "ZXMvcmVsZWFzZXMvcmFwaWRzOi9ob21lL3MzMjQ4OTczLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwiLAp9Cg==";
os.environ["_ModuleTable_Sz_"] = "4";
_mlstatus = True
Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only):
release/23.10
slurm/slurm-paths
EasyBuild-develop
== 2025-08-07 11:31:45,905 easyblock.py:2530 WARNING Loaded modules detected: ['release/23.10', 'slurm/slurm-paths', 'EasyBuild-develop']
== 2025-08-07 11:31:45,914 easyblock.py:2505 INFO Removing existing module file /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/modules/all/sympy/1.12-gfbf-2024a.lua
== 2025-08-07 11:31:46,220 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/base/exceptions.py:126 in __init__): Failed to remove file /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/modules/all/sympy/1.12-gfbf-2024a.lua: [Errno 2] No such file or directory: '/data/horse/ws/s3248973-EasyBuild/easybuild-rapids/modules/all/sympy/1.12-gfbf-2024a.lua' (at easybuild/tools/filetools.py:376 in remove_file)
== 2025-08-07 11:31:46,220 filetools.py:2135 INFO Removing lock /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rapids_software_sympy_1.12-gfbf-2024a.lock...
== 2025-08-07 11:31:46,228 filetools.py:403 INFO Path /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rapids_software_sympy_1.12-gfbf-2024a.lock successfully removed.
== 2025-08-07 11:31:46,228 filetools.py:2139 INFO Lock removed: /data/horse/ws/s3248973-EasyBuild/easybuild-rapids/software/.locks/_data_horse_ws_s3248973-EasyBuild_easybuild-rapids_software_sympy_1.12-gfbf-2024a.lock
== 2025-08-07 11:31:46,228 easyblock.py:387 INFO Closing log for application name sympy version 1.12
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