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(partial) EasyBuild log for failed build of /tmp/easybuild-tmp/eb-d771sQ/files_pr13248/t/TensorFlow/TensorFlow-2.0.0-foss-2019a-Python-3.7.2.eb (PR(s) #13248)
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
== 2021-06-23 23:07:10,041 easyblock.py:2939 WARNING failing sanity check for 'tensorflow-estimator' extension: command "python -c "import tensorflow_estimator"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/__init__.py", line 10, in <module>
from tensorflow_estimator._api.v1 import estimator
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/_api/v1/estimator/__init__.py", line 10, in <module>
from tensorflow_estimator._api.v1.estimator import experimental
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/_api/v1/estimator/experimental/__init__.py", line 10, in <module>
from tensorflow_estimator.python.estimator.canned.dnn import dnn_logit_fn_builder
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/python/estimator/canned/dnn.py", line 23, in <module>
from tensorflow.python.feature_column import dense_features
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.,
== 2021-06-23 23:07:10,042 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-23 23:07:10,042 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-23 23:07:10,042 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-23 23:07:10,043 run.py:226 INFO running cmd: pip --version
== 2021-06-23 23:07:12,526 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-23 23:07:12,527 run.py:226 INFO running cmd: pip check
== 2021-06-23 23:07:15,574 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-23 23:07:15,574 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-23 23:07:17,880 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-23 23:07:17,881 run.py:226 INFO running cmd: python -c "import astor"
== 2021-06-23 23:07:18,076 extensioneasyblock.py:181 INFO Sanity check for astor successful!
== 2021-06-23 23:07:18,077 easyblock.py:2941 INFO Sanity check for 'astor' extension passed!
== 2021-06-23 23:07:18,077 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-23 23:07:18,077 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-23 23:07:18,078 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-23 23:07:18,078 run.py:226 INFO running cmd: pip --version
== 2021-06-23 23:07:21,080 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-23 23:07:21,081 run.py:226 INFO running cmd: pip check
== 2021-06-23 23:07:24,098 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-23 23:07:24,098 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-23 23:07:26,142 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-23 23:07:26,144 run.py:226 INFO running cmd: python -c "import keras_applications"
== 2021-06-23 23:07:26,874 extensioneasyblock.py:181 INFO Sanity check for Keras-Applications successful!
== 2021-06-23 23:07:26,875 easyblock.py:2941 INFO Sanity check for 'Keras-Applications' extension passed!
== 2021-06-23 23:07:26,875 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-23 23:07:26,875 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-23 23:07:26,876 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-23 23:07:26,876 run.py:226 INFO running cmd: pip --version
== 2021-06-23 23:07:29,266 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-23 23:07:29,267 run.py:226 INFO running cmd: pip check
== 2021-06-23 23:07:32,652 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-23 23:07:32,653 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-23 23:07:35,623 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-23 23:07:35,625 run.py:226 INFO running cmd: python -c "import gast"
== 2021-06-23 23:07:35,790 extensioneasyblock.py:181 INFO Sanity check for gast successful!
== 2021-06-23 23:07:35,790 easyblock.py:2941 INFO Sanity check for 'gast' extension passed!
== 2021-06-23 23:07:35,791 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-23 23:07:35,791 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-23 23:07:35,791 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-23 23:07:35,792 run.py:226 INFO running cmd: pip --version
== 2021-06-23 23:07:38,185 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-23 23:07:38,186 run.py:226 INFO running cmd: pip check
== 2021-06-23 23:07:41,276 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-23 23:07:41,277 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-23 23:07:43,291 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-23 23:07:43,292 run.py:226 INFO running cmd: python -c "import opt_einsum"
== 2021-06-23 23:07:44,194 extensioneasyblock.py:181 INFO Sanity check for opt-einsum successful!
== 2021-06-23 23:07:44,195 easyblock.py:2941 INFO Sanity check for 'opt-einsum' extension passed!
== 2021-06-23 23:07:44,195 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-23 23:07:44,196 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-23 23:07:44,196 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-23 23:07:44,196 run.py:226 INFO running cmd: pip --version
== 2021-06-23 23:07:46,679 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-23 23:07:46,680 run.py:226 INFO running cmd: pip check
== 2021-06-23 23:07:49,891 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-23 23:07:49,892 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-23 23:07:52,031 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-23 23:07:52,033 run.py:226 INFO running cmd: python -c "import wrapt"
== 2021-06-23 23:07:52,322 extensioneasyblock.py:181 INFO Sanity check for wrapt successful!
== 2021-06-23 23:07:52,323 easyblock.py:2941 INFO Sanity check for 'wrapt' extension passed!
== 2021-06-23 23:07:52,323 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-23 23:07:52,323 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-23 23:07:52,324 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-23 23:07:52,324 run.py:226 INFO running cmd: pip --version
== 2021-06-23 23:07:55,237 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-23 23:07:55,238 run.py:226 INFO running cmd: pip check
== 2021-06-23 23:07:58,535 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-23 23:07:58,535 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-23 23:08:00,614 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-23 23:08:00,616 run.py:226 INFO running cmd: python -c "import keras_preprocessing"
== 2021-06-23 23:08:00,933 extensioneasyblock.py:181 INFO Sanity check for Keras-Preprocessing successful!
== 2021-06-23 23:08:00,933 easyblock.py:2941 INFO Sanity check for 'Keras-Preprocessing' extension passed!
== 2021-06-23 23:08:00,934 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-23 23:08:00,934 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-23 23:08:00,934 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-23 23:08:00,935 run.py:226 INFO running cmd: pip --version
== 2021-06-23 23:08:03,449 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-23 23:08:03,450 run.py:226 INFO running cmd: pip check
== 2021-06-23 23:08:07,102 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-23 23:08:07,102 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-23 23:08:09,980 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-23 23:08:09,981 run.py:226 INFO running cmd: python -c "import tensorflow"
== 2021-06-23 23:08:11,103 extension.py:218 WARNING Sanity check for 'TensorFlow' extension failed: command "python -c "import tensorflow"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
== 2021-06-23 23:08:11,104 easyblock.py:2795 INFO Using customized sanity check paths: {'files': ['bin/tensorboard'], 'dirs': ['lib/python3.7/site-packages']}
== 2021-06-23 23:08:11,104 easyblock.py:2837 INFO Using customised sanity check commands: ["/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow'", "/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use'"]
== 2021-06-23 23:08:11,105 run.py:226 INFO running cmd: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow'
== 2021-06-23 23:08:11,833 run.py:623 INFO parse_log_for_error msg: Command used: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow'
== 2021-06-23 23:08:11,833 run.py:625 INFO parse_log_for_error (some may be harmless) regExp (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) found:
Failed to load the native TensorFlow runtime.
above this error message when asking for help.
== 2021-06-23 23:08:11,833 run.py:582 WARNING Found 2 errors in command output (output: Failed to load the native TensorFlow runtime.
above this error message when asking for help.)
== 2021-06-23 23:08:11,834 easyblock.py:3045 WARNING Sanity check: sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
)
== 2021-06-23 23:08:11,834 run.py:226 INFO running cmd: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use'
== 2021-06-23 23:08:12,556 run.py:623 INFO parse_log_for_error msg: Command used: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use'
== 2021-06-23 23:08:12,557 run.py:625 INFO parse_log_for_error (some may be harmless) regExp (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) found:
Failed to load the native TensorFlow runtime.
above this error message when asking for help.
== 2021-06-23 23:08:12,557 run.py:582 WARNING Found 2 errors in command output (output: Failed to load the native TensorFlow runtime.
above this error message when asking for help.)
== 2021-06-23 23:08:12,557 easyblock.py:3045 WARNING Sanity check: sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
)
== 2021-06-23 23:08:12,558 easyblock.py:2669 INFO Checking for banned/required linked shared libraries...
== 2021-06-23 23:08:12,558 easyblock.py:2685 INFO No banned/required libraries specified
== 2021-06-23 23:08:13,230 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Sanity check failed: command "python -c "import tensorflow"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
)
sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
) (at easybuild/framework/easyblock.py:3074 in _sanity_check_step)
== 2021-06-23 23:08:13,231 build_log.py:265 INFO ... (took 3 mins 48 secs)
== 2021-06-23 23:08:13,231 easyblock.py:3656 WARNING build failed (first 300 chars): Sanity check failed: command "python -c "import tensorflow"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.
== 2021-06-23 23:08:13,231 easyblock.py:300 INFO Closing log for application name TensorFlow version 2.0.0
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