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(partial) EasyBuild log for failed build of /tmp/easybuild-tmp/eb-DCQZsR/files_pr13248/t/TensorFlow/TensorFlow-2.0.0-foss-2019a-Python-3.7.2.eb (PR(s) #13248) (easyblock PR(s) #2469)
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
== 2021-06-24 00:32:49,814 easyblock.py:2939 WARNING failing sanity check for 'tensorflow-estimator' extension: command "python -c "import tensorflow_estimator"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/__init__.py", line 10, in <module>
from tensorflow_estimator._api.v1 import estimator
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/_api/v1/estimator/__init__.py", line 10, in <module>
from tensorflow_estimator._api.v1.estimator import experimental
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/_api/v1/estimator/experimental/__init__.py", line 10, in <module>
from tensorflow_estimator.python.estimator.canned.dnn import dnn_logit_fn_builder
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_estimator/python/estimator/canned/dnn.py", line 23, in <module>
from tensorflow.python.feature_column import dense_features
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.,
== 2021-06-24 00:32:49,814 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-24 00:32:49,814 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-24 00:32:49,815 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-24 00:32:49,815 run.py:226 INFO running cmd: pip --version
== 2021-06-24 00:32:52,242 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-24 00:32:52,243 run.py:226 INFO running cmd: pip check
== 2021-06-24 00:32:55,874 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-24 00:32:55,875 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-24 00:32:57,768 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-24 00:32:57,769 run.py:226 INFO running cmd: python -c "import astor"
== 2021-06-24 00:32:57,947 extensioneasyblock.py:181 INFO Sanity check for astor successful!
== 2021-06-24 00:32:57,948 easyblock.py:2941 INFO Sanity check for 'astor' extension passed!
== 2021-06-24 00:32:57,948 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-24 00:32:57,948 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-24 00:32:57,949 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-24 00:32:57,949 run.py:226 INFO running cmd: pip --version
== 2021-06-24 00:33:00,401 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-24 00:33:00,402 run.py:226 INFO running cmd: pip check
== 2021-06-24 00:33:03,327 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-24 00:33:03,328 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-24 00:33:05,278 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-24 00:33:05,280 run.py:226 INFO running cmd: python -c "import keras_applications"
== 2021-06-24 00:33:05,992 extensioneasyblock.py:181 INFO Sanity check for Keras-Applications successful!
== 2021-06-24 00:33:05,993 easyblock.py:2941 INFO Sanity check for 'Keras-Applications' extension passed!
== 2021-06-24 00:33:05,993 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-24 00:33:05,994 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-24 00:33:05,994 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-24 00:33:05,994 run.py:226 INFO running cmd: pip --version
== 2021-06-24 00:33:08,445 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-24 00:33:08,446 run.py:226 INFO running cmd: pip check
== 2021-06-24 00:33:12,298 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-24 00:33:12,299 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-24 00:33:14,312 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-24 00:33:14,313 run.py:226 INFO running cmd: python -c "import gast"
== 2021-06-24 00:33:14,476 extensioneasyblock.py:181 INFO Sanity check for gast successful!
== 2021-06-24 00:33:14,477 easyblock.py:2941 INFO Sanity check for 'gast' extension passed!
== 2021-06-24 00:33:14,477 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-24 00:33:14,478 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-24 00:33:14,478 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-24 00:33:14,478 run.py:226 INFO running cmd: pip --version
== 2021-06-24 00:33:16,925 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-24 00:33:16,926 run.py:226 INFO running cmd: pip check
== 2021-06-24 00:33:19,952 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-24 00:33:19,953 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-24 00:33:21,877 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-24 00:33:21,879 run.py:226 INFO running cmd: python -c "import opt_einsum"
== 2021-06-24 00:33:22,837 extensioneasyblock.py:181 INFO Sanity check for opt-einsum successful!
== 2021-06-24 00:33:22,837 easyblock.py:2941 INFO Sanity check for 'opt-einsum' extension passed!
== 2021-06-24 00:33:22,838 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-24 00:33:22,838 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-24 00:33:22,838 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-24 00:33:22,839 run.py:226 INFO running cmd: pip --version
== 2021-06-24 00:33:25,307 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-24 00:33:25,308 run.py:226 INFO running cmd: pip check
== 2021-06-24 00:33:28,308 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-24 00:33:28,309 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-24 00:33:30,284 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-24 00:33:30,285 run.py:226 INFO running cmd: python -c "import wrapt"
== 2021-06-24 00:33:30,570 extensioneasyblock.py:181 INFO Sanity check for wrapt successful!
== 2021-06-24 00:33:30,571 easyblock.py:2941 INFO Sanity check for 'wrapt' extension passed!
== 2021-06-24 00:33:30,571 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-24 00:33:30,571 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-24 00:33:30,572 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-24 00:33:30,572 run.py:226 INFO running cmd: pip --version
== 2021-06-24 00:33:33,035 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-24 00:33:33,036 run.py:226 INFO running cmd: pip check
== 2021-06-24 00:33:36,317 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-24 00:33:36,318 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-24 00:33:38,202 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-24 00:33:38,203 run.py:226 INFO running cmd: python -c "import keras_preprocessing"
== 2021-06-24 00:33:38,388 extensioneasyblock.py:181 INFO Sanity check for Keras-Preprocessing successful!
== 2021-06-24 00:33:38,389 easyblock.py:2941 INFO Sanity check for 'Keras-Preprocessing' extension passed!
== 2021-06-24 00:33:38,389 environment.py:91 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1')
== 2021-06-24 00:33:38,390 pythonpackage.py:784 INFO Detection of downloaded depenencies enabled, checking output of installation command...
== 2021-06-24 00:33:38,390 pythonpackage.py:213 INFO Determining pip version...
== 2021-06-24 00:33:38,390 run.py:226 INFO running cmd: pip --version
== 2021-06-24 00:33:40,896 pythonpackage.py:221 INFO Found pip version: 19.0.3
== 2021-06-24 00:33:40,897 run.py:226 INFO running cmd: pip check
== 2021-06-24 00:33:45,118 pythonpackage.py:844 INFO `pip check` completed successfully
== 2021-06-24 00:33:45,119 pythonpackage.py:462 INFO Running command '/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -m pip list --isolated --disable-pip-version-check --format json'
== 2021-06-24 00:33:47,096 pythonpackage.py:870 INFO Found 0 invalid packages out of 94 packages
== 2021-06-24 00:33:47,097 run.py:226 INFO running cmd: python -c "import tensorflow"
== 2021-06-24 00:33:48,056 extension.py:218 WARNING Sanity check for 'TensorFlow' extension failed: command "python -c "import tensorflow"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
== 2021-06-24 00:33:48,057 easyblock.py:2795 INFO Using customized sanity check paths: {'files': ['bin/tensorboard'], 'dirs': ['lib/python3.7/site-packages']}
== 2021-06-24 00:33:48,057 easyblock.py:2837 INFO Using customised sanity check commands: ["/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow'", "/sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use'"]
== 2021-06-24 00:33:48,058 run.py:226 INFO running cmd: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow'
== 2021-06-24 00:33:48,842 run.py:623 INFO parse_log_for_error msg: Command used: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow'
== 2021-06-24 00:33:48,842 run.py:625 INFO parse_log_for_error (some may be harmless) regExp (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) found:
Failed to load the native TensorFlow runtime.
above this error message when asking for help.
== 2021-06-24 00:33:48,842 run.py:582 WARNING Found 2 errors in command output (output: Failed to load the native TensorFlow runtime.
above this error message when asking for help.)
== 2021-06-24 00:33:48,843 easyblock.py:3045 WARNING Sanity check: sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
)
== 2021-06-24 00:33:48,843 run.py:226 INFO running cmd: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use'
== 2021-06-24 00:33:49,604 run.py:623 INFO parse_log_for_error msg: Command used: /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use'
== 2021-06-24 00:33:49,605 run.py:625 INFO parse_log_for_error (some may be harmless) regExp (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) found:
Failed to load the native TensorFlow runtime.
above this error message when asking for help.
== 2021-06-24 00:33:49,605 run.py:582 WARNING Found 2 errors in command output (output: Failed to load the native TensorFlow runtime.
above this error message when asking for help.)
== 2021-06-24 00:33:49,605 easyblock.py:3045 WARNING Sanity check: sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
)
== 2021-06-24 00:33:49,605 easyblock.py:2669 INFO Checking for banned/required linked shared libraries...
== 2021-06-24 00:33:49,606 easyblock.py:2685 INFO No banned/required libraries specified
== 2021-06-24 00:33:50,283 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Sanity check failed: command "python -c "import tensorflow"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'import tensorflow' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
)
sanity check command /sw/installed/Python/3.7.2-GCCcore-8.2.0/bin/python -c 'from tensorflow.python.util import tf_should_use' exited with code 1 (output: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 98, in <module>
from tensorflow_core import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 40, in <module>
from tensorflow.python.tools import module_util as _module_util
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
module = self._load()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
module = _importlib.import_module(self.__name__)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/sw/installed/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libprotobuf.so.3.7.1.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
) (at easybuild/framework/easyblock.py:3074 in _sanity_check_step)
== 2021-06-24 00:33:50,283 build_log.py:265 INFO ... (took 3 mins 49 secs)
== 2021-06-24 00:33:50,284 easyblock.py:3656 WARNING build failed (first 300 chars): Sanity check failed: command "python -c "import tensorflow"" failed; output:
Traceback (most recent call last):
File "/tmp/ebinstall/software/TensorFlow/2.0.0-foss-2019a-Python-3.7.2/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.
== 2021-06-24 00:33:50,284 easyblock.py:300 INFO Closing log for application name TensorFlow version 2.0.0
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