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Creating quick SCE object from Seurat expression data
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| library(scater) | |
| ## Create new SCE object from the seurat expression object | |
| fData <- new("AnnotatedDataFrame", data = [email protected]) | |
| seurat_scater_sce <- newSCESet(exprsData = as.matrix(expression_seurat@data), phenoData = fData, | |
| lowerDetectionLimit=0.0, | |
| logExprsOffset=1) | |
| seurat_scater_sce <- calculateQCMetrics(seurat_scater_sce) |
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