FloWuenne
/ find_specific_markers.R
Created
October 30, 2017 13:59
— forked from daskelly/find_specific_markers.R
Use Seurat to find specific markers of each cell type
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| library(tidyverse) | |
| library(Seurat) | |
| # Find specific markers for each cell type | |
| celltypes <- # list of cell types (unique ident labels of Seurat object) | |
| obj <- # Seurat object | |
| specific_markers <- NULL | |
| # First we do all pairwise comparisons and retain any markers that | |
| # are even somewhat higher in the cell type of interest |
FloWuenne
/ find_specific_markers.R
Last active
November 17, 2017 22:07
— forked from daskelly/find_specific_markers.R
Use Seurat to find specific markers of each cell type (modified from Dan Skelly)
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| library(tidyverse) | |
| library(Seurat) | |
| # Find specific markers for each cell type | |
| # Find specific markers for each cell type | |
| celltypes <- unique(expression_seurat_subset@ident) # list of cell types (unique ident labels of Seurat object) | |
| obj <- expression_seurat_subset # Seurat object | |
| specific_markers <- NULL | |
| # First we do all pairwise comparisons and retain any markers that |