FloWuenne
/ find_specific_markers.R
Last active
November 17, 2017 22:07
— forked from daskelly/find_specific_markers.R
Use Seurat to find specific markers of each cell type (modified from Dan Skelly)
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| library(tidyverse) | |
| library(Seurat) | |
| # Find specific markers for each cell type | |
| # Find specific markers for each cell type | |
| celltypes <- unique(expression_seurat_subset@ident) # list of cell types (unique ident labels of Seurat object) | |
| obj <- expression_seurat_subset # Seurat object | |
| specific_markers <- NULL | |
| # First we do all pairwise comparisons and retain any markers that |
FloWuenne
/ find_specific_markers.R
Created
October 30, 2017 13:59
— forked from daskelly/find_specific_markers.R
Use Seurat to find specific markers of each cell type
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| library(tidyverse) | |
| library(Seurat) | |
| # Find specific markers for each cell type | |
| celltypes <- # list of cell types (unique ident labels of Seurat object) | |
| obj <- # Seurat object | |
| specific_markers <- NULL | |
| # First we do all pairwise comparisons and retain any markers that | |
| # are even somewhat higher in the cell type of interest |