Daniela Lopes Cardoso GenDataPro

GenDataPro / OrthologuesIDs

Created April 27, 2016 12:15

Use a list of Ensembl human gene IDs to generate the related orthologue IDs

	import requests
	import json
	from collections import Counter
	import pandas as pd

	file_name = "/Users/Dani/OneDrive/GenDataPro/TFs.txt"
	with open(file_name) as gene_text:
	gene_file = gene_text.read()
	gene_ids = gene_file.split()

GenDataPro / Complexity Score

Last active August 15, 2016 16:59

	import time
	try:
	from queue import Queue
	except ImportError:
	from Queue import Queue
	from threading import Thread
	import requests
	import json
	from collections import Counter
	import pandas as pd

GenDataPro / Protein_IDs_Motifs

Created March 13, 2016 00:33

	import requests
	import sys
	import json

	gene_id = "ENSG00000196498"

	response = requests.get("http://rest.ensembl.org/lookup/id/{}?content-type=application/json;expand=1".format(gene_id))

	json_data = response.content.decode("utf-8")
	data = json.loads(json_data)

GenDataPro / Draft_Complexity_Score

Created March 12, 2016 17:12

	import json
	import requests, sys

	gene_id = "ENSG00000139618"
	gene_name = "NCOR2"
	species = "homo_sapiens"
	transcript = "ENSP00000384018"

	response_isoform = requests.get("http://rest.ensembl.org/lookup/id/{}?content-type=application/json;expand=2".format(gene_id))
	json_data_isoform = response_isoform.content.decode("utf-8")

GenDataPro / Ensembl_ID_Name_Converter

Created March 9, 2016 13:32

	import requests
	import sys
	import json

	#gene_id = [line.strip() for line in open("C:/name/MyDocuments/numbers", 'r')]

	gene_id = ["ENSG00000196498", "ENSG00000157764", "ENSG00000139618", "ENSMUSG00000041147"]

	for gene in gene_id:
	new_gene = gene

GenDataPro / DraftComplexityEquation1

Created March 3, 2016 13:36

	import json
	import requests, sys

	gene_id = "ENSG00000139618"
	gene_name = "NCOR2"
	species = "homo_sapiens"
	transcript = "ENSP00000384018"

	response_isoform = requests.get("http://rest.ensembl.org/lookup/id/{}?content-type=application/json;expand=2".format(gene_id))
	json_data_isoform = response_isoform.content.decode("utf-8")

GenDataPro / TranscriptTranslationIDs

Created March 3, 2016 13:33

	import sys
	import json

	gene_id = "NCOR2"

	response = requests.get("http://rest.ensembl.org/lookup/symbol/homo_sapiens/{}?content-type=application/json;expand=1".format(gene_id))

	json_data = response.content.decode("utf-8")
	data = json.loads(json_data)

GenDataPro / gist:7b522ef8b0a5f505586e

Created March 3, 2016 13:13

	import requests, sys
	import json

	gene_id = "NCOR2"

	response = requests.get("http://rest.ensembl.org/lookup/symbol/homo_sapiens/{}?content-type=application/json;expand=1".format(gene_id))

	json_data = response.content.decode("utf-8")
	data = json.loads(json_data)