ekatrukha

//ImageJ macro making a tilted movie out of stack
//uses shear transform + rotation
//Eugene Katrukha katpyxa at gmail.com
requires("1.48h");

sTitle=getTitle();
sMovieTitle=sTitle+"_tilt_movie";
setBatchMode(true);

//Dialog

DragaDoncila

import pandas as pd
import os
import re

from sklearn.decomposition import PCA

from microscopium import io
from microscopium.preprocess import montage_stream
from microscopium.preprocess import correct_multiimage_illumination
from microscopium.preprocess import find_background_illumination

rainwoodman

OPTS=`getopt -o p:P:T:M:s:m:h --long port:nprocs:,nthreads:,memory-limit:,socks:,monitor:,help -- "$@"`

usage () {
    echo "usage : bash dask-cluster.sh -M memory-limit -P nprocs -T nthreads -s SOCKSPORT -m MONITORHOST -p MONITORPORT [ clientcommand ... ] "
    echo
    echo launch a transient dask cluster via SLURM. The purpose of the cluster is to run a single dask
    echo client.
    echo
    echo The script will setup a SOCKS proxy at localhost:SOCKSPORT on MONITORHOST to access the cluster.
    echo via the ssh service at MONITORHOST:MONITORPORT

acbetter

#!/usr/bin/python3
# -*- coding: utf-8 -*-

from PyQt5.QtCore import Qt
from PyQt5.QtGui import QImage, QPixmap, QPalette, QPainter
from PyQt5.QtPrintSupport import QPrintDialog, QPrinter
from PyQt5.QtWidgets import QLabel, QSizePolicy, QScrollArea, QMessageBox, QMainWindow, QMenu, QAction, \
    qApp, QFileDialog

martindurant

import bokeh
from bokeh.io import output_notebook, push_notebook
output_notebook()

##

import numpy as np
from ipywidgets import interact, widgets

from bokeh.plotting import figure, show

ctmakro

# if input image is in range 0..1, please first multiply img by 255
# assume image is ndarray of shape [height, width, channels] where channels can be 1, 3 or 4
def imshow(img):
    import cv2
    import IPython
    _,ret = cv2.imencode('.jpg', img) 
    i = IPython.display.Image(data=ret)
    IPython.display.display(i)

althonos

# https://gist.github.com/althonos/6914b896789d3f2078d1e6237642c35c

[metadata]
name = {name}
version = file: {name}/_version.txt
author = Martin Larralde
author_email = [email protected]
url = https://github.com/althonos/{name}
description = {description}
long_description = file: README.md

kb1lqc

import pytest
import sliplib
import string

from faradayio import faraday
from tests.serialtestclass import SerialTestClass


def test_socketOne():
    """Simple test to make sure loopback serial port created successfully"""

santisbon

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charlesreid1

In [1]: from skimage.io import imread as skimage_imread

In [2]: from matplotlib.pyplot import imread as plt_imread

In [3]: from scipy.ndimage import imread as scipy_imread

In [4]: skimage_imread('bulk_water_000.png')
Out[4]:
array([[[146, 125,  54, 255],
        [146, 125,  54, 255],