Guangchuang Yu GuangchuangYu
🎯
GuangchuangYu
/ hack chipseeker annotation with CpGI
Created
May 2, 2016 14:01
— forked from lpantano/hack chipseeker annotation with CpGI
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| require(TxDb.Hsapiens.UCSC.hg19.knownGene) | |
| txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene | |
| library(ChIPseeker) | |
| library(GenomicRanges) | |
| # Hack chipseeker function to add annotaiton | |
| getGenomicAnnoStat <- function(peakAnno) { | |
| if ( class(peakAnno) == "GRanges" ) | |
| peakAnno <- as.data.frame(peakAnno) | |
| anno <- peakAnno$annotation | |
| ## anno <- sub(" \\(.+", "", anno) |
GuangchuangYu
/ ppurl-alternative.md
Last active
August 29, 2015 14:19
— forked from zjhiphop/ppurl-alternative.md