Created
July 20, 2019 20:36
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A simple procedure for sampling a distribution to look like another. A method through binning and another by kde estimation. The binning idea came from this stats exchange question and the kde method came from other studies of mine. https://stats.stackexchange.com/questions/286062/distribution-matching-by-subsampling
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| library(tidyverse) | |
| library(broom) | |
| df <- | |
| tibble( | |
| label = factor(c(rep("group1", 8E4), rep("group2", 1E4))), | |
| var = c(rnorm(n = 8E4, mean =2, sd= 5), c( rnorm(n = 5E3,mean =-2, sd= 0.5), rnorm(n=5E3, mean = 1, sd = 0.5))) | |
| ) | |
| df %>% | |
| ggplot(aes(var)) + | |
| geom_histogram(aes(fill = label), bins=100, position = 'identity', alpha=0.8) | |
| # densities by binning | |
| df <- | |
| df %>% | |
| mutate(bins = cut(var, breaks = 100)) | |
| df %>% | |
| group_by(label, bins) %>% | |
| summarise(total = n()) %>% | |
| mutate(prop = total/sum(total)) %>% | |
| select(-total) %>% | |
| spread(label, prop, fill = 0) -> densities | |
| df %>% | |
| filter(label == 'group1') %>% | |
| left_join(densities, by = 'bins') %>% | |
| mutate(weight = group2/group1) %>% | |
| sample_n(20000, replace = T, weight = weight) %>% | |
| mutate(label = 'group1 (sampled)') %>% | |
| bind_rows(df) %>% | |
| ggplot(aes(var)) + | |
| geom_histogram(aes(fill = label), bins=100, position = 'identity', alpha=0.8) | |
| # density by kde | |
| kde_function_group1 <- df %>% filter(label == 'group1') %>% pull(var) %>% density(.) %>% approxfun(.) | |
| kde_function_group2 <- df %>% filter(label == 'group2') %>% pull(var) %>% density(.) %>% approxfun(.) | |
| df %>% | |
| filter(label == 'group1') %>% | |
| mutate(g2d = kde_function_group2(var), g1d = kde_function_group1(var), | |
| weight = coalesce(g2d/g1d, 0) #sample importance | |
| ) %>% | |
| sample_n(20000, replace = T, weight = weight) %>% | |
| mutate(label = 'group1 (sampled)') %>% | |
| bind_rows(df) %>% | |
| ggplot(aes(var)) + | |
| geom_histogram(aes(fill = label), bins=100, position = 'identity', alpha=0.8) | |
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