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@GuillaumeFavelier
GuillaumeFavelier / mne_get_all_data.py
Created May 31, 2022 09:40
Download or update the necessary MNE-Python datasets
# from: https://github.com/mne-tools/mne-python/blob/main/tools/circleci_download.sh
import mne
print(mne.datasets.sample.data_path(update_path=True))
print(mne.datasets.fetch_fsaverage(verbose=True))
print(mne.datasets.spm_face.data_path(update_path=True))
print(mne.datasets.somato.data_path(update_path=True))
print(mne.datasets.eegbci.load_data(1, [3, 6, 10, 14], update_path=True))
print(mne.datasets.eegbci.load_data(2, [3], update_path=True))
print(mne.datasets.eegbci.load_data(3, [3], update_path=True))
print(mne.datasets.eegbci.load_data(4, [3], update_path=True))
@GuillaumeFavelier
GuillaumeFavelier / vtk_check_extension.py
Last active February 9, 2022 17:36
Check OpenGL extension support with VTK
import vtk as _vtk
renderWindow = _vtk.vtkRenderWindow()
renderWindow.SetOffScreenRendering(True)
renderWindow.Render()
extension_name = "_ES3"
if renderWindow.SupportsOpenGL():
caps = renderWindow.ReportCapabilities()
@GuillaumeFavelier
GuillaumeFavelier / pyopengl_check_es3.py
Created February 4, 2022 14:45
Check OpenGL_ES3 support with PyOpenGL
from OpenGL.GL import (glGetIntegerv, glGetStringi, GL_NUM_EXTENSIONS,
GL_EXTENSIONS)
from OpenGL.GLUT import glutInit, glutCreateWindow
glutInit()
wind = glutCreateWindow("Check OpenGL ES3")
num_extensions = glGetIntegerv(GL_NUM_EXTENSIONS, 0)
extensions = list()
for i in range(num_extensions.value):
@GuillaumeFavelier
GuillaumeFavelier / pyvista_raster_demo.py
Last active May 17, 2021 15:29
PyVista demo of rasterization
import numpy as np
import pyvista as pv
from matplotlib.colors import ListedColormap
def add_vertex(plotter, point):
vertex = pv.Sphere(center=point)
plotter.add_mesh(
mesh=vertex,
color='white',
@GuillaumeFavelier
GuillaumeFavelier / pyvista_brain_demo.py
Last active May 17, 2021 13:59
PyVista demo using MNE hemis - "mosaic" effect
import pyvista as pv
import numpy as np
from matplotlib.colors import ListedColormap
plotter = pv.Plotter(
point_smoothing=True,
line_smoothing=True,
polygon_smoothing=True,
)
@GuillaumeFavelier
GuillaumeFavelier / mne_ipyvtk_demo.ipynb
Last active November 23, 2021 13:33
Little tour of MNE features with the ipyvtk backend
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@GuillaumeFavelier
GuillaumeFavelier / pyvista_overlay_gpu_compositing.py
Created December 3, 2020 13:53
Demonstration of N overlays on a surface (standard GPU method)
import numpy as np
import pyvista
from pyvista import examples
from matplotlib.colors import ListedColormap
# BEGIN: Inspired by Vispy
# https://github.com/vispy/vispy
_rgb2xyz_norm = np.array([[0.43395276, 0.212671, 0.01775791],
[0.37621941, 0.71516, 0.10947652],
@GuillaumeFavelier
GuillaumeFavelier / example_plot_vector_source_estimates.py
Last active March 26, 2020 16:43
Quick example for plot_vector_source_estimates in mne-python
"""
.. _tut_viz_stcs:
Visualize source time courses
=============================
This tutorial focuses on visualization of stcs.
.. contents:: Table of Contents
:local:
@GuillaumeFavelier
GuillaumeFavelier / pyvista_checkbox_dragon.py
Created January 10, 2020 13:57
Demonstration of PyVista with checkbox button
import pyvista as pv
import numpy as np
from pyvista import examples
mesh = examples.download_dragon()
p = pv.BackgroundPlotter()
# describe the movement
class Animate(object):
@GuillaumeFavelier
GuillaumeFavelier / slider.py
Created January 9, 2020 15:56
Hack for vtkSliderWidget with multiple handles
import pyvista as pv
import vtk
def foo(bar):
pass
def disable_tube(slider):
tr = slider.GetEventTranslator()