RPackageStatuses.md

R package statuses

GitHub account: HenrikBengtsson

	Package	GitHub Actions	Travis CI	Test coverage	CRAN	BioC
1.	ACNE					-
2.	affxparser				-
3.	aroma.affymetrix					-
4.	aroma.apd					-
5.	aroma.cn					-
6.	aroma.cn.eval				-	-
7.	aroma.core					-
8.	aroma.light				-
9.	aroma.seq				-	-
10.	calmate					-
11.	cnagIO				-	-
12.	dChipIO					-
13.	doFuture					-
14.	expectile				-	-
15.	future					-
16.	future.apply					-
17.	future.BatchJobs					-
18.	future.batchtools					-
19.	future.callr					-
20.	future.tests					-
21.	globals					-
22.	illuminaio				-
23.	listenv					-
24.	matrixStats					-
25.	parallelly					-
26.	profmem					-
27.	progressr					-
28.	PSCBS					-
29.	QDNAseq				-
30.	R.archive				-	-
31.	R.cache					-
32.	R.devices					-
33.	R.filesets					-
34.	R.huge					-
35.	R.matlab					-
36.	R.menu				-	-
37.	R.methodsS3					-
38.	R.oo					-
39.	R.rsp					-
40.	R.utils					-
41.	sfit				-	-
42.	startup					-
43.	TopDom					-

Appendix

This report was built by:

source('http://callr.org/rfile#/home/hb/repositories/gists/RPackageStatuses/RPackageStatuses.md.rsp')

RPackageStatuses.md.rsp

<%-------------------------------------------------------------------
 Rscript -e R.rsp::rfile <url>
 -------------------------------------------------------------------%>
<%@meta postprocess="FALSE"%>
<%
account <- "HenrikBengtsson"
 
cran_pkgs <- c(
# R.* packages
"dChipIO",
"doFuture",
"future",
"future.apply",
"future.callr",
"future.BatchJobs",
"future.batchtools",
"future.tests",
"globals",
"listenv",
"parallelly",
"progressr",
"R.methodsS3",
"R.oo",
"R.utils",
"R.cache",
"R.devices",
"R.huge",
"R.rsp",
"R.filesets",
"R.matlab",
# aroma.* packages
"aroma.core",
"aroma.affymetrix",
"aroma.apd",
"aroma.cn",
"calmate",
"ACNE",
# Miscellaneous packages
"matrixStats",
"PSCBS",
"profmem",
"startup",
"TopDom"
)
bioc_pkgs <- c(
"aroma.light",
"affxparser",
"illuminaio",
"QDNAseq"
)
non_cran_pkgs <- c(
"R.archive",
"R.menu",
"aroma.cn.eval",
"aroma.seq",
"cnagIO",
"sfit",
"expectile"
)
pkgs <- sort(c(cran_pkgs, bioc_pkgs, non_cran_pkgs))

coveralls <- c("aroma.apd", "aroma.cn.eval")
codecovs <- c("doFuture", "future", "future.apply", "future.callr", "future.BatchJobs", "future.batchtools", "profmem", "startup", "R.filesets", "listenv", "globals", "TopDom", "PSCBS", "aroma.light", "illuminaio")
%>
 
<%
url_to_gist <- function(url) {
  pattern <- "^https://gist.githubusercontent.com/(.*)/(.*)/raw/(.*)"
  if (regexpr(pattern, url) == -1) return(url)
  gsub(pattern, "gist://\\1/\\2/\\3", url)
}
%>
 
# R package statuses
 
GitHub account: [<%=account%>](https://www.github.com/<%=account%>)
 
<table>
<tr>
 <th></th>
 <th>Package</th>
 <th><a href="https://github.com/actions/">GitHub Actions</a></th>
 <th><a href="https://travis-ci.org/">Travis CI</a></th>
 <th><a href="https://codecov.io/">Test</a> <a href="https://coveralls.io/">coverage</a></th>
 <th><a href="http://cran.r-project.org/">CRAN</a></th>
 <th><a href="http://www.bioconductor.org/">BioC</a></th>
</tr>
<% for (ii in seq_along(pkgs)) { %>
<% pkg <- pkgs[ii] %>
<% codecov <- !is.element(pkg, coveralls) %>
<tr>
 <td style="text-align: right"><%=ii%>.</td>
 <td><a href="https://github.com/<%=account%>/<%=pkg%>"><%=pkg%></a></td>
 <td><a href="https://github.com/<%=account%>/<%=pkg%>/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/<%=account%>/<%=pkg%>/workflows/R-CMD-check/badge.svg?branch=develop" alt="GitHub Actions status"></a></td>
 <td><a href="https://travis-ci.org/<%=account%>/<%=pkg%>"><img src="https://travis-ci.org/<%=account%>/<%=pkg%>.svg?branch=master" alt="TravisCI build status"></a></td>
 <td>
<% if (codecov) { %>
 <a href="https://codecov.io/gh/<%=account%>/<%=pkg%>"><img src="https://codecov.io/gh/<%=account%>/<%=pkg%>/branch/develop/graph/badge.svg" alt="Coverage Status"/></a>
<% } else { %>
 <a href="https://coveralls.io/r/<%=account%>/<%=pkg%>"><img src="https://coveralls.io/repos/<%=account%>/<%=pkg%>/badge.svg?branch=develop" alt="Coverage Status"/></a>
<% } %>
 </td>
 <td>
 <% if (pkg %in% cran_pkgs) { %>
   <a href="http://cran.r-project.org/web/checks/check_results_<%=pkg%>.html"><img border="0" src="http://www.r-pkg.org/badges/version/<%=pkg%>" alt="CRAN version"></a>
 <% } else { %>
  -
 <% } %>
 </td>
 <td>
 <% if (pkg %in% bioc_pkgs) { %>
  <a href="http://master.bioconductor.org/checkResults/devel/bioc-LATEST/<%=pkg%>/"><img border="0" src="http://bioconductor.org/shields/build/devel/bioc/<%=pkg%>.svg" alt="Build status"></a>
 <% } else { %>
  -
 <% } %>
 </td>
</tr>
<% } # for (pkg ...) %>
</table>
 
 
 
## Appendix
 
This report was built by:
```s
<% url <- url_to_gist('<%@meta name="source"%>') %>
source('http://callr.org/rfile#<%=url%>')
```