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Florian R. Hölzlwimmer Hoeze

  • Technical University of Munich
  • Munich
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@marcelm
marcelm / snakemake-pure-python.py
Last active November 29, 2023 00:45
pure Python module that uses snakemake to construct and run a workflow
#!/usr/bin/env python3
"""
Running this script is (intended to be) equivalent to running the following Snakefile:
include: "pipeline.conf" # Should be an empty file
shell.prefix("set -euo pipefail;")
rule all:
input:
@jboner
jboner / latency.txt
Last active May 4, 2025 09:35
Latency Numbers Every Programmer Should Know
Latency Comparison Numbers (~2012)
----------------------------------
L1 cache reference 0.5 ns
Branch mispredict 5 ns
L2 cache reference 7 ns 14x L1 cache
Mutex lock/unlock 25 ns
Main memory reference 100 ns 20x L2 cache, 200x L1 cache
Compress 1K bytes with Zippy 3,000 ns 3 us
Send 1K bytes over 1 Gbps network 10,000 ns 10 us
Read 4K randomly from SSD* 150,000 ns 150 us ~1GB/sec SSD