IgorFobia · April 26, 2016 12:06 · aassie · Apr 26, 2016
diff --git a/concatenate_sequences_fasta.sh b/concatenate_sequences_fasta.sh
 #!/bin/bash
 # Concatenate the sequences of a multi-FASTA file and make a new FASTA file with the new sequence

 INPUT_FILE=$1
 OUTPUT_FILE=$2

 (echo ">concantenated"; grep -i '^[ACGTURYKMSWBDHVNX\-]*$' $INPUT_FILE | tr -d '\n' | fold -w 60; echo) > $OUTPUT_FILE
	#!/bin/bash
	# Concatenate the sequences of a multi-FASTA file and make a new FASTA file with the new sequence

	INPUT_FILE=$1
	OUTPUT_FILE=$2

	(echo ">concantenated"; grep -i '^[ACGTURYKMSWBDHVNX\-]*$' $INPUT_FILE \| tr -d '\n' \| fold -w 60; echo) > $OUTPUT_FILE