Last active
December 27, 2016 06:12
-
-
Save JakeConway/57bd40859c6aea5fbc24 to your computer and use it in GitHub Desktop.
Manual intersection input of banana genome example
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
input <- c( | |
Musa_acuminata = 759, | |
Phoenix_dactylifera = 769, | |
Arabidopsis_thaliana = 1187, | |
Oryza_sativa = 1246, | |
Sorghum_bicolor = 827, | |
Brachypodium_distachyon = 387, | |
"Phoenix_dactylifera&Musa_acuminata" = 467, | |
"Oryza_sativa&Musa_acuminata" = 29, | |
"Arabidopsis_thaliana&Oryza_sativa" = 6, | |
"Sorghum_bicolor&Arabidopsis_thaliana" = 9, | |
"Oryza_sativa&Phoenix_dactylifera" = 32, | |
"Sorghum_bicolor&Phoenix_dactylifera" = 49, | |
"Sorghum_bicolor&Musa_acuminata" = 49, | |
"Brachypodium_distachyon&Oryza_sativa" = 547, | |
"Sorghum_bicolor&Oryza_sativa" = 1151, | |
"Brachypodium_distachyon&Arabidopsis_thaliana" = 10, | |
"Brachypodium_distachyon&Musa_acuminata" = 9, | |
"Brachypodium_distachyon&Sorghum_bicolor" = 402, | |
"Musa_acuminata&Arabidopsis_thaliana" = 155, | |
"Arabidopsis_thaliana&Phoenix_dactylifera" = 105, | |
"Brachypodium_distachyon&Phoenix_dactylifera" = 25, | |
"Sorghum_bicolor&Oryza_sativa&Phoenix_dactylifera" = 42, | |
"Brachypodium_distachyon&Oryza_sativa&Phoenix_dactylifera" = 12, | |
"Sorghum_bicolor&Oryza_sativa&Brachypodium_distachyon" = 2809, | |
"Brachypodium_distachyon&Oryza_sativa&Arabidopsis_thaliana" = 18, | |
"Sorghum_bicolor&Oryza_sativa&Arabidopsis_thaliana" = 40, | |
"Sorghum_bicolor&Brachypodium_distachyon&Arabidopsis_thaliana" = 14, | |
"Oryza_sativa&Brachypodium_distachyon&Musa_acuminata" = 28, | |
"Sorghum_bicolor&Brachypodium_distachyon&Musa_acuminata" = 13, | |
"Oryza_sativa&Musa_acuminata&Phoenix_dactylifera" = 35, | |
"Musa_acuminata&Sorghum_bicolor&Arabidopsis_thaliana" = 21, | |
"Brachypodium_distachyon&Musa_acuminata&Arabidopsis_thaliana" = 7, | |
"Oryza_sativa&Musa_acuminata&Arabidopsis_thaliana" = 13, | |
"Musa_acuminata&Phoenix_dactylifera&Arabidopsis_thaliana" = 206, | |
"Phoenix_dactylifera&Arabidopsis_thaliana&Sorghum_bicolor" = 4, | |
"Oryza_sativa&Arabidopsis_thaliana&Phoenix_dactylifera" = 6, | |
"Sorghum_bicolor&Oryza_sativa&Musa_acuminata" = 64, | |
"Sorghum_bicolor&Musa_acuminata&Phoenix_dactylifera" = 19, | |
"Brachypodium_distachyon&Arabidopsis_thaliana&Phoenix_dactylifera" = 3, | |
"Brachypodium_distachyon&Musa_acuminata&Phoenix_dactylifera" = 12, | |
"Brachypodium_distachyon&Sorghum_bicolor&Phoenix_dactylifera" = 23, | |
"Musa_acuminata&Brachypodium_distachyon&Sorghum_bicolor&Arabidopsis_thaliana" = 54, | |
"Phoenix_dactylifera&Sorghum_bicolor&Oryza_sativa&Musa_acuminata" = 62, | |
"Brachypodium_distachyon&Oryza_sativa&Musa_acuminata&Phoenix_dactylifera" = 18, | |
"Sorghum_bicolor&Brachypodium_distachyon&Oryza_sativa&Arabidopsis_thaliana" = 206, | |
"Brachypodium_distachyon&Musa_acuminata&Oryza_sativa&Arabidopsis_thaliana" = 29, | |
"Oryza_sativa&Musa_acuminata&Arabidopsis_thaliana&Sorghum_bicolor" = 71, | |
"Musa_acuminata&Oryza_sativa&Phoenix_dactylifera&Arabidopsis_thaliana" = 28, | |
"Brachypodium_distachyon&Musa_acuminata&Oryza_sativa&Arabidopsis_thaliana" = 7, | |
"Brachypodium_distachyon&Sorghum_bicolor&Phoenix_dactylifera&Arabidopsis_thaliana" = 11, | |
"Brachypodium_distachyon&Oryza_sativa&Phoenix_dactylifera&Arabidopsis_thaliana" = 5, | |
"Arabidopsis_thaliana&Phoenix_dactylifera&Sorghum_bicolor&Oryza_sativa" = 21, | |
"Musa_acuminata&Sorghum_bicolor&Phoenix_dactylifera&Arabidopsis_thaliana" = 23, | |
"Musa_acuminata&Brachypodium_distachyon&Sorghum_bicolor&Phoenix_dactylifera" = 24, | |
"Musa_acuminata&Oryza_sativa&Sorghum_bicolor&Brachypodium_distachyon" = 368, | |
"Phoenix_dactylifera&Brachypodium_distachyon&Sorghum_bicolor&Oryza_sativa" = 190, | |
"Phoenix_dactylifera&Brachypodium_distachyon&Sorghum_bicolor&Oryza_sativa&Arabidopsis_thaliana" = 258, | |
"Phoenix_dactylifera&Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Oryza_sativa" = 685, | |
"Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Oryza_sativa&Arabidopsis_thaliana" = 1458, | |
"Sorghum_bicolor&Musa_acuminata&Phoenix_dactylifera&Oryza_sativa&Arabidopsis_thaliana" = 149, | |
"Brachypodium_distachyon&Musa_acuminata&Phoenix_dactylifera&Oryza_sativa&Arabidopsis_thaliana" = 80, | |
"Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Phoenix_dactylifera&Arabidopsis_thaliana" = 113, | |
"Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Phoenix_dactylifera&Oryza_sativa&Arabidopsis_thaliana" = 7674 | |
) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment