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@JakeConway
Last active December 27, 2016 06:12
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Manual intersection input of banana genome example
input <- c(
Musa_acuminata = 759,
Phoenix_dactylifera = 769,
Arabidopsis_thaliana = 1187,
Oryza_sativa = 1246,
Sorghum_bicolor = 827,
Brachypodium_distachyon = 387,
"Phoenix_dactylifera&Musa_acuminata" = 467,
"Oryza_sativa&Musa_acuminata" = 29,
"Arabidopsis_thaliana&Oryza_sativa" = 6,
"Sorghum_bicolor&Arabidopsis_thaliana" = 9,
"Oryza_sativa&Phoenix_dactylifera" = 32,
"Sorghum_bicolor&Phoenix_dactylifera" = 49,
"Sorghum_bicolor&Musa_acuminata" = 49,
"Brachypodium_distachyon&Oryza_sativa" = 547,
"Sorghum_bicolor&Oryza_sativa" = 1151,
"Brachypodium_distachyon&Arabidopsis_thaliana" = 10,
"Brachypodium_distachyon&Musa_acuminata" = 9,
"Brachypodium_distachyon&Sorghum_bicolor" = 402,
"Musa_acuminata&Arabidopsis_thaliana" = 155,
"Arabidopsis_thaliana&Phoenix_dactylifera" = 105,
"Brachypodium_distachyon&Phoenix_dactylifera" = 25,
"Sorghum_bicolor&Oryza_sativa&Phoenix_dactylifera" = 42,
"Brachypodium_distachyon&Oryza_sativa&Phoenix_dactylifera" = 12,
"Sorghum_bicolor&Oryza_sativa&Brachypodium_distachyon" = 2809,
"Brachypodium_distachyon&Oryza_sativa&Arabidopsis_thaliana" = 18,
"Sorghum_bicolor&Oryza_sativa&Arabidopsis_thaliana" = 40,
"Sorghum_bicolor&Brachypodium_distachyon&Arabidopsis_thaliana" = 14,
"Oryza_sativa&Brachypodium_distachyon&Musa_acuminata" = 28,
"Sorghum_bicolor&Brachypodium_distachyon&Musa_acuminata" = 13,
"Oryza_sativa&Musa_acuminata&Phoenix_dactylifera" = 35,
"Musa_acuminata&Sorghum_bicolor&Arabidopsis_thaliana" = 21,
"Brachypodium_distachyon&Musa_acuminata&Arabidopsis_thaliana" = 7,
"Oryza_sativa&Musa_acuminata&Arabidopsis_thaliana" = 13,
"Musa_acuminata&Phoenix_dactylifera&Arabidopsis_thaliana" = 206,
"Phoenix_dactylifera&Arabidopsis_thaliana&Sorghum_bicolor" = 4,
"Oryza_sativa&Arabidopsis_thaliana&Phoenix_dactylifera" = 6,
"Sorghum_bicolor&Oryza_sativa&Musa_acuminata" = 64,
"Sorghum_bicolor&Musa_acuminata&Phoenix_dactylifera" = 19,
"Brachypodium_distachyon&Arabidopsis_thaliana&Phoenix_dactylifera" = 3,
"Brachypodium_distachyon&Musa_acuminata&Phoenix_dactylifera" = 12,
"Brachypodium_distachyon&Sorghum_bicolor&Phoenix_dactylifera" = 23,
"Musa_acuminata&Brachypodium_distachyon&Sorghum_bicolor&Arabidopsis_thaliana" = 54,
"Phoenix_dactylifera&Sorghum_bicolor&Oryza_sativa&Musa_acuminata" = 62,
"Brachypodium_distachyon&Oryza_sativa&Musa_acuminata&Phoenix_dactylifera" = 18,
"Sorghum_bicolor&Brachypodium_distachyon&Oryza_sativa&Arabidopsis_thaliana" = 206,
"Brachypodium_distachyon&Musa_acuminata&Oryza_sativa&Arabidopsis_thaliana" = 29,
"Oryza_sativa&Musa_acuminata&Arabidopsis_thaliana&Sorghum_bicolor" = 71,
"Musa_acuminata&Oryza_sativa&Phoenix_dactylifera&Arabidopsis_thaliana" = 28,
"Brachypodium_distachyon&Musa_acuminata&Oryza_sativa&Arabidopsis_thaliana" = 7,
"Brachypodium_distachyon&Sorghum_bicolor&Phoenix_dactylifera&Arabidopsis_thaliana" = 11,
"Brachypodium_distachyon&Oryza_sativa&Phoenix_dactylifera&Arabidopsis_thaliana" = 5,
"Arabidopsis_thaliana&Phoenix_dactylifera&Sorghum_bicolor&Oryza_sativa" = 21,
"Musa_acuminata&Sorghum_bicolor&Phoenix_dactylifera&Arabidopsis_thaliana" = 23,
"Musa_acuminata&Brachypodium_distachyon&Sorghum_bicolor&Phoenix_dactylifera" = 24,
"Musa_acuminata&Oryza_sativa&Sorghum_bicolor&Brachypodium_distachyon" = 368,
"Phoenix_dactylifera&Brachypodium_distachyon&Sorghum_bicolor&Oryza_sativa" = 190,
"Phoenix_dactylifera&Brachypodium_distachyon&Sorghum_bicolor&Oryza_sativa&Arabidopsis_thaliana" = 258,
"Phoenix_dactylifera&Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Oryza_sativa" = 685,
"Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Oryza_sativa&Arabidopsis_thaliana" = 1458,
"Sorghum_bicolor&Musa_acuminata&Phoenix_dactylifera&Oryza_sativa&Arabidopsis_thaliana" = 149,
"Brachypodium_distachyon&Musa_acuminata&Phoenix_dactylifera&Oryza_sativa&Arabidopsis_thaliana" = 80,
"Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Phoenix_dactylifera&Arabidopsis_thaliana" = 113,
"Musa_acuminata&Sorghum_bicolor&Brachypodium_distachyon&Phoenix_dactylifera&Oryza_sativa&Arabidopsis_thaliana" = 7674
)
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