Singularity file that may create a Singularity container with nipype, pybids, seaborn, and jupyter notebooks

nipype.swist

Bootstrap: docker
From: nipype/nipype:latest

# This is the adjusted (fixed) build recipe for the issue above.
# sudo singularity build swist Singularity.swist

%labels
    Maintainer GT
    Version v1.0

%environment
    . /opt/conda/bin/activate neuro

%post
    # Install nano
    apt-get update && apt-get install -y nano

    # conda installs to /opt/miniconda-latest, so link to the expected location
    ln -s /opt/miniconda-latest /opt/conda

    echo ". /opt/conda/etc/profile.d/conda.sh" >>$SINGULARITY_ENVIRONMENT
    echo "conda activate neuro" >>$SINGULARITY_ENVIRONMENT

    # Install into conda environment
    . /opt/conda/bin/activate neuro &&
    /opt/conda/bin/conda install --name neuro -y seaborn &&
    /opt/conda/bin/conda install --name neuro -y jupyter &&
    /opt/conda/envs/neuro/bin/pip install pybids