Runs the nipype docker container, and maps local folders so that notebooks in nipype_tutorial are available, data in local ./data are available, and output is sent to local ./output.

run_nipype_docker.sh

#!/bin/bash

docker run -it --rm \
       -v /Volumes/Data/Courses/Tutorials/nipype_tutorial/:/home/neuro/nipype_tutorial \
       -v /Volumes/Data/Courses/Tutorials/nipype_tutorial/data/:/data \
       -v /Volumes/Data/Courses/Tutorials/nipype_tutorial/output/:/output \
       -p 8989:8888 \
       miykael/nipype_tutorial \
       jupyter notebook