John Griffiths JohnGriffiths

tempfile

Dipy hcp dsi reconstruction error

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I'm getting an error with dipy DSI reconstruction on HCP WU-MINN data.

It's a bit of a mystery as I've definitely got successful reconstructions using dipy with code very similar to this. But now I am getting the error below every time.

All the files are included in this gist to reproduce the error, apart from the DWI data (too big); that was simply data.nii.gz from subject 100307.

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	from tvb.simulator.lab import *
	import threading
	import numpy
	import time
	import sys
	from matplotlib.tri import Triangulation
	from matplotlib import pyplot as plt

	class SimThread(threading.Thread):