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Joss Whittle JossWhittle

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Senior Research Software Engineer at UK-SeRP. Formerly S-RSE at the Rosalind Franklin Institute.

JossWhittle / cluster.py

Last active August 8, 2017 21:52

	import numpy as np

	# Some array of booleans of width w and height h
	#occupied_map = np.array([[0,0,0,0],
	# [1,1,1,0],
	# [0,0,0,1],
	# [0,1,0,1],
	# [0,1,0,0],
	# [0,1,1,0],
	# [0,0,0,0]], dtype=np.int32).astype(np.bool)

JossWhittle / davina.tex

Last active June 1, 2017 13:54

	% In preamble.
	\usepackage[font=small,skip=0pt,format=hang]{caption}
	% Allows you to set the width of table columns.
	\newcolumntype{L}[1]{>{\raggedright\let\newline\\\arraybackslash\hspace{0pt}}m{#1}}
	\newcolumntype{C}[1]{>{\centering\let\newline\\\arraybackslash\hspace{0pt}}m{#1}}
	\newcolumntype{R}[1]{>{\raggedleft\let\newline\\\arraybackslash\hspace{0pt}}m{#1}}

	% In document
	\begin{table}[H]
	{\resizebox{\columnwidth}{!}{ % Use \textwidth for single column format.

JossWhittle / getEdges.py

Last active May 6, 2017 13:46 — forked from DavidGeorge528/getEdges.py

	F = meshes[0]["Faces"].copy().sort(1)
	num_faces = F.shape[0]

	edges = {}
	for i in range(num_faces):
	edges.setdefault(tuple(F[i,:2]), []).append(i)
	edges.setdefault(tuple(F[i,1:3]), []).append(i)
	edges.setdefault(tuple(F[i,[0,2]]), []).append(i)

	neighbours = np.zeros((num_faces, 3), dtype=np.uint32)

JossWhittle / LearningRateScheduler.py

Last active May 5, 2017 12:29

	# http://machinelearningmastery.com/using-learning-rate-schedules-deep-learning-models-python-keras/

	from keras.callbacks import LearningRateScheduler

	generator.compile(loss=laplacian_charbonnier_loss, optimizer=RMSprop(lr=0))

	def step_decay(epoch):
	initial_lrate = 0.0002
	drop = 0.5
	epochs_drop = 50.0

JossWhittle / ConvTest.ipynb

Created April 15, 2017 20:18

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JossWhittle / Bake.java

Last active January 11, 2017 20:30 — forked from anonymous/Bake.java

	import java.util.Scanner;

	public class Bake {

	// Constants for bag sizes
	static final double[] FLR_SIZES = { 750, 500, 250 };
	static final double[] SUG_SIZES = { 600, 400, 200 };
	static final double[] BUT_SIZES = { 500, 250, 125 };
	static final double[] EGG_SIZES = { 12, 10, 6 };

JossWhittle / contour_tree.dot

Last active November 8, 2016 16:17

	graph contour_tree {
	layout="dot"
	rankdir=UD
	ranksep="0.02"
	graph [fontname="helvetica"];
	node [fontname="helvetica"];
	edge [fontname="helvetica"];
	s_3539 [label="108" fontcolor="#0CADBC" shape=none]
	s_3459 [label="163" fontcolor="#92BF72" shape=none]
	s_3460 [label="163" fontcolor="#92BF72" shape=none]

JossWhittle / normalize.cpp

Created July 7, 2016 15:15

	#pragma once

	#include <vector>
	#include <string>

	#include "../RenderingEssentials/maths/Vec.hpp"
	#include "../RenderingEssentials/maths/Common.hpp"
	#include "../RenderingEssentials/geom/Geom.hpp"
	#include "../RenderingEssentials/utils/Loader.hpp"
	#include "../RenderingEssentials/utils/Exporter.hpp"

JossWhittle / BMP.hpp

Last active July 6, 2016 14:56

	static inline unsigned char* LoadBMP_24(const std::string &path) {
	int w, h;
	unsigned char *img = nullptr;

	std::ifstream inFile(path, std::ios::in \| std::ios::binary);
	if (inFile.is_open()) {

	/// Header
	unsigned char hdr[0x36];
	inFile.read((char*) hdr, 0x12);

JossWhittle / Cam.cpp

Created April 4, 2016 16:12