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Reshaping with tidyr
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library("dplyr") | |
library("tidyr") | |
library("data.table") | |
smp <- data_frame( | |
ID = rep(1:3, 2), | |
BMI = rep(c(21, 26), 3), | |
sbp = rep(c(150, 120), 3), | |
nendo = rep(2008:2009, 3) | |
) | |
# ID BMI sbp nendo | |
# 1 1 21 150 2008 | |
# 2 2 26 120 2009 | |
# 3 3 21 150 2008 | |
# 4 1 26 120 2009 | |
# 5 2 21 150 2008 | |
# 6 3 26 120 2009 | |
smp_reshaped <- stats::reshape(as.data.frame(smp), idvar="ID", timevar="nendo", direction="wide") | |
# ID BMI.2008 sbp.2008 BMI.2009 sbp.2009 | |
# 1 1 21 150 26 120 | |
# 2 2 21 150 26 120 | |
# 3 3 21 150 26 120 | |
smp_reshaped <- dcast.data.table( | |
as.data.table(smp), | |
ID ~ nendo, | |
value.var = c("BMI", "sbp"), | |
fill = NA, | |
fun.aggregate = NULL | |
) | |
# ID BMI_2008 BMI_2009 sbp_2008 sbp_2009 | |
# 1: 1 21 26 150 120 | |
# 2: 2 21 26 150 120 | |
# 3: 3 21 26 150 120 | |
tidyr_reshape <- function(df, id, by, valiables, sep){ | |
n_key <- df %>% n_distinct(id, by) | |
if (n_key != nrow(df)){ | |
stop("Duplicate identifiers for rows") | |
} else if (n_key == nrow(df)){ | |
df <- df %>% | |
select_(.dots = c(id, by, valiables)) %>% | |
gather_(key_col="valiables", value_col="value", gather_cols=valiables) %>% | |
unite_(col="by_valiables", from=c("valiables", by), sep=sep) %>% | |
spread_(key_col="by_valiables", value_col="value", fill=NA) | |
} | |
return(df) | |
} | |
smp_reshaped <- tidyr_reshape(smp, "ID", "nendo", c("BMI", "sbp"), "_") | |
# A tibble: 3 x 5 | |
# ID BMI_2008 BMI_2009 sbp_2008 sbp_2009 | |
# * <int> <dbl> <dbl> <dbl> <dbl> | |
# 1 1 21 26 150 120 | |
# 2 2 21 26 150 120 | |
# 3 3 21 26 150 120 |
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