Created
August 2, 2018 09:44
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Read a BLAST output and generate a pandas dataframe
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| import pandas as pd | |
| def read_blast_output(output): | |
| """Reads BLAST output (outfmt 6) and returns a pandas dataframe.""" | |
| return pd.read_csv(output, | |
| sep="\t", | |
| names=["qseqid", "sseqid", "pident", "length", "mismatch", "gapopen", "qstart", "qend", "sstart", "send", "evalue", "bitscore"], | |
| index_col="qseqid") |
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