biosamples-v4 json-schema

biosamples-json-schema.json

[{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "id": "http://www.ebi.ac.uk/biosamples/0.0.1/sample",
    "additionalProperties": false,
    "required": [
        "name",
        "accession"
    ],
    "type": "object",
    "properties": {
        "name": {
            "type": "string"
        },
        "accession": {
            "type": "string",
            "pattern": "^SAM(D|N|E([AG]?))[0-9]+$"
        },
        "domain": {
            "type": "string"
        },
        "release": {
            "type": "string",
            "format": "date-time" // https://stackoverflow.com/questions/47223815/in-jsonschema-the-format-value-should-be-set-as-full-date-or-date
        },
        "update": {
            "type": "string",
            "format": "date-time"
        },
        "characteristics": {
            "type": "object",
            "additionalProperties": {
                "type": "http://www.ebi.ac.uk/biosamples/0.0.1/characteristic"
            }
        },
        "relationships": {
            "type": "array",
            "items": {
                "type": "http://www.ebi.ac.uk/biosamples/0.0.1/relationship"
            }
        },
        "organization": {
            "type": "array",
            "items": {
                "type": "http://www.ebi.ac.uk/biosamples/0.0.1/organisation"
            }
        },
        "contact": {
            "type": "array",
            "items": {
                "type": "http://www.ebi.ac.uk/biosamples/0.0.1/contact"
            }
        },
        "publications": {
            "type": "array",
            "items": {
                "type": "http://www.ebi.ac.uk/biosamples/0.0.1/publication"
            }
        },
        "releaseDate": {
            "type": "string",
            "format": "date"
        },
        "updateDate": {
            "type": "string",
            "format": "date"
        },
        "_links": {
            "type": "object",
            "properties": {
                "self": {
                    "type": "http://www.ebi.ac.uk/biosamples/0.0.1/_link"
                }
            },
            "additionalProperties": {
                "type": "http://www.ebi.ac.uk/biosamples/0.0.1/_link"
            }
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/characteristic",
    "additionalProperties": false,
    "type": "object",
    "properties": {
        "text": {
            "type": "string"
        },
        "ontologyTerms": {
            "type": "array"
        },
        "unit": {
            "type": "string"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/relationship",
    "additionalProperties": false,
    "type": "object",
    "required": [
        "source",
        "type",
        "target"
    ],
    "properties": {
        "source": {
            "type": "string",
            "pattern": "^SAM(D|N|E([AG]?))[0-9]+$"

        },
        "type": {
            "type": "string"
        },
        "target": {
            "type": "string",
            "pattern": "^SAM(D|N|E([AG]?))[0-9]+$"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/organization",
    "additionalProperties": false,
    "type": "object",
    "properties": {
        "Name": {
            "type": "string"
        },
        "Role": {
            "type":"string"
        },
        "E-mail": {
            "type":"string"
        },
        "URL": {
            "type":"string"
        },
        "Address": {
            "type":"string"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/contact",
    "additionalProperties": false,
    "type": "object",
    "properties": {
        "FirstName": {
            "type": "string"
        },
        "LastName": {
            "type":"string"
        },
        "MidInitials": {
            "type":"string"
        },
        "Name": {
            "type":"string"
        },
        "Role": {
            "type":"string"
        },
        "E-mail": {
            "type":"string"
        },
        "Affiliation": {
            "type":"string"
        },
        "URL": {
            "type":"string"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/publication",
    "additionalProperties": false,
    "type": "object",
    "properties": {
        "doi": {
            "type": "string"
        },
        "pubmed_id": {
            "type":"string"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/externalReference",
    "additionalProperties": false,
    "type": "object",
    "required": [
        "url"
    ],
    "properties": {
        "url": {
            "type": "string"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/curation",
    "additionalProperties": false,
    "type": "object",
    "required": [
        "url"
    ],
    "properties": {
        "url": {
            "type": "string"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/curationLink",
    "additionalProperties": false,
    "type": "object",
    "required": [
        "url"
    ],
    "properties": {
        "url": {
            "type": "string"
        }
    }
},
{
    "$schema": "http://json-schema.org/draft-07/schema#",
    "$id": "http://www.ebi.ac.uk/biosamples/0.0.1/_link",
    "additionalProperties": {
    },
    "type": "object",
    "required": [
        "href"
    ],
    "properties": {
        "href": {
            "type": "string"
        },
        "templated": {
            "type": "boolean"
        }
    }

}
]