My setup on Debian 11 "Bullseye"

setup_bullseye.sh

#!/usr/bin/env bash
# NB: this is based on my previous gist installDebian.sh

# *Pre-requisite*:
## 1: enter super user (su) mode
su
## 2: add kevcaz (my username) to sudo 
## note NOPASSWD:ALL means no password required when kevcaz uses sudo
## remove 'NOPASSWD:' if you want the password to be required 
echo "kevcaz  ALL=(ALL) NOPASSWD:ALL" | sudo tee /etc/sudoers.d/username
## 3: edit sources.list (if needed)

sudo apt-get update 
# 
sudo apt-get install \
	apt-transport-https aria2 build-essential byobu cloc curl ffmpeg htop \
	figlet gconf2 gconf-service git gpick inxi lshw llvm lolcat pass tree \	
	openssh-server pdftk qpdf lftp dnsutils nmap ncftp nethogs lightning \
	festival uuid-runtime xdotool xvfb youtube-dl zsh 
# 
sudo apt-get install \
	audacity bibtool calibre emacs font-manager imagemagick inkscape \
	gimp gnome-photos gnome-shell gnome-session gparted gnuplot \
  graphicsmagick lyx okular papirus-icon-theme qgis \
  texlive-full thunderbird transmission vlc vim xournal 
# 
sudo apt-get install \
  fonts-font-awesome fonts-roboto fonts-firacode fontforge \
  powerline fonts-powerline ttf-mscorefonts-installer \
  libreoffice-l10n-fr mythes-fr hunspell-fr hunspell-pt-br \
	hunspell-en-gb hunspell-en-ca	
# 
sudo apt-get install \
 	cmake default-jdk gfortran clang golang hugo npm \
  nim octave octave-symbolic pandoc pandoc-citeproc primesieve perl \
  mdbtools postgresql postgis python3-pip python3 python3-sphinx \
  r-base r-recommended r-base-dev ruby-dev uncrustify valgrind libomp-dev

# Rust (https://www.rust-lang.org/tools/install)
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh

# 
git config --global credential.helper 'cache --timeout=14400'
git config --global user.name "Kevin Cazelles"
git config --global user.email [email protected]

# Prezto 
zsh
git clone --recursive https://github.com/sorin-ionescu/prezto.git "${ZDOTDIR:-$HOME}/.zprezto"
setopt EXTENDED_GLOB
  for rcfile in "${ZDOTDIR:-$HOME}"/.zprezto/runcoms/^README.md(.N); do
    ln -s "$rcfile" "${ZDOTDIR:-$HOME}/.${rcfile:t}"
  done
chsh -s /bin/zsh

# Applications folder
mkdir -p ~/Applications && cd ~/Applications
## config 
git clone https://github.com/KevCaz/dotfiles.git
cd dotfiles && make deploy


# Atom 
sudo apt-get install gvfs-bin
wget https://atom.io/download/deb -O /tmp/atom.deb && sudo dpkg -i /tmp/atom.deb
## themes
apm install atom-material-syntax atom-material-syntax-dark atom-material-ui
## packages
apm install language-knitr language-latex atom-language-r language-matlab\
    language-docker language-julia language-sage\
    autocomplete-bibtex autocomplete-emojis autocomplete-font-awesome\
    wordcount minimap pdf-view pigments color-picker gist-it file-icons\
    ascii-unicode-escape teletype multi-cursor-increment zen filesize\
    data-atom intentions busy-signal ink julia-client sourcerer linter\
    linter-lintr split-diff atom-beautify git-time-machine highlight-selected\
    markdown-preview-enhanced document-outline Hydrogen hydrogen-launcher\ 
    linter-ui-default atom-ide-ui atom-ide-ui ide-python ide-r

# VSCodium (https://vscodium.com/)
echo 'deb https://paulcarroty.gitlab.io/vscodium-deb-rpm-repo/debs/ vscodium main' | sudo tee --append /etc/apt/sources.list.d/vscodium.list 
sudo apt-get update && sudo apt-get install codium 
# to be used by spellright
ln -s /usr/share/hunspell/* ~/.config/VSCodium/Dictionaries


# Pastel (https://github.com/sharkdp/pastel)
wget "https://github.com/sharkdp/pastel/releases/download/v0.8.0/pastel_0.8.0_amd64.deb" -O "/tmp/pastel.deb"
sudo dpkg -i /tmp/pastel.deb

# Brave (requires apt-transport-https curl)
curl -s https://brave-browser-apt-release.s3.brave.com/brave-core.asc | sudo apt-key --keyring /etc/apt/trusted.gpg.d/brave-browser-release.gpg add -
echo "deb [arch=amd64] https://brave-browser-apt-release.s3.brave.com/ bullseye main" | sudo tee /etc/apt/sources.list.d/brave-browser-release.list
sudo apt-get update && sudo apt-get install brave-browser

# Dropbox (https://www.dropbox.com/install-linux)
cd ~ && wget -O - "https://www.dropbox.com/download?plat=lnx.x86_64" | tar xzf -

# Docker (https://docs.docker.com/engine/install/debian/)
sudo apt-get install ca-certificates gnupg-agent software-properties-common
curl -fsSL https://download.docker.com/linux/debian/gpg | sudo apt-key add -
sudo apt-key fingerprint 0EBFCD88
sudo add-apt-repository \
   "deb [arch=amd64] https://download.docker.com/linux/debian buster stable"
sudo apt-get update && sudo apt-get install docker-ce docker-ce-cli containerd.io

# Simplenote (https://github.com/Automattic/simplenote-electron/releases)
wget https://github.com/Automattic/simplenote-electron/releases/download/v1.21.1/Simplenote-linux-1.21.1-amd64.deb -O /tmp/simplenote.deb
sudo dpkg -i /tmp/simplenote.deb

# Slack Desktop 
wget https://downloads.slack-edge.com/linux_releases/slack-desktop-4.8.0-amd64.deb -O /tmp/slack.deb
sudo apt-get install /tmp/slack.deb

# Discord 
wget 'https://discord.com/api/download?platform=linux&format=deb' -O /tmp/discord.deb
sudo apt-get install /tmp/discord.deb

# Python packages
# dependencies
sudo apt-get install libcairo2-dev libjpeg-dev libgif-dev libpq-dev
# packages
pip3 install --user --upgrade pip
pip3 install --user pip-tools numpy scipy matplotlib psycopg2 pyparsing future \
 pandoc-fignos pandoc-tablenos pandoc-eqnos zotero-cli plotly ipykernel jupyterlab pycairo \
 autopep8 beautysh radian tensorflow keras

# Gem config
sudo gem install bundler commonmarker

# npm packages
sudo npm -g gtop decktape google-font-installer

# R config 
sudo apt-get install ibfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libjq-dev libprotobuf-dev protobuf-compiler
sudo apt-get install r-cran-*
mkdir -p ~/Applications/R_4_0
# /Applications/R_4_0 in Renviron is set as user library path
Rscript -e "install.packages(c('mapview', 'rorcid', 'rcrossref',
	'goodpractice', 'microbenchmark', 'pkgdown', 'rhub', 'blogdown'))"
Rscript -e "devtools::install_github(c('inSileco/graphicsutils', 
	'inSileco/inSilecoMisc', 'inSileco/omdbr', 'inSilecoRef'))"

## Sage
cd ~/Applications
git clone https://github.com/sagemath/sage.git
cd sage && git checkout 9.1 && make

# Zotero 
wget 'https://www.zotero.org/download/client/dl?channel=release&platform=linux-x86_64&version=5.0.89' -O /tmp/zotero.tar.bz2
tar -xvf /tmp/zotero.tar.bz2 -C ~/Applications
aria2c https://github.com/retorquere/zotero-better-bibtex/releases/download/v5.2.66/zotero-better-bibtex-5.2.66.xpi

## Julia
cd ~/Applications && git clone https://github.com/JuliaLang/julia.git
cd julia && git checkout v1.5.1 && make
julia -e '
	using Pkg
	Pkg.add(
	["CSV", "DataFrames", "DataFramesMeta", "Query", "Printf",
	"Statistics", "Random", "Distributions", "Combinatorics", "Flux", "Tracker",
	"DifferentialEquations", "Parameters", "RecursiveArrayTools", "NLsolve",
	"PyPlot", "Lazy"])'
	
## duf 
cd ~/Applications
git clone https://github.com/muesli/duf.git
cd duf
go build
cd ~


## Node 
cd ~/Applications && git clone https://github.com/nodejs/node.git
cd node && git checkout v14.10.1 
./configure && make

## Download Markdown-here for thunderbird
wget https://github.com/neilmayhew/markdown-here/releases/download/v2.13.4-community/markdown-here-v2.13.4-community.xpi